Wall clock time and date at job start Mon Mar 30 2020 01:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47497 * 269.99749 * 3 2 1 5 5 H 1.48497 * 109.47121 * 30.00451 * 3 2 1 6 6 H 1.48504 * 109.46713 * 149.99773 * 3 2 1 7 7 C 1.37885 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99585 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00321 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.53419 * 59.89915 * 9 7 2 11 11 C 1.53123 * 109.50314 * 299.80776 * 9 7 2 12 12 C 1.53124 * 109.16220 * 182.40363 * 11 9 7 13 13 C 1.53035 * 109.27475 * 57.64849 * 12 11 9 14 14 N 1.46846 * 109.52744 * 300.82106 * 13 12 11 15 15 C 1.46898 * 111.00056 * 185.84176 * 14 13 12 16 16 C 1.53005 * 109.47201 * 293.95628 * 15 14 13 17 17 O 1.42896 * 109.47173 * 65.00030 * 16 15 14 18 18 C 1.35899 * 117.00227 * 180.02562 * 17 16 15 19 19 C 1.38738 * 120.05202 * 359.72292 * 18 17 16 20 20 C 1.38142 * 119.94167 * 179.75019 * 19 18 17 21 21 C 1.38270 * 120.05766 * 0.50231 * 20 19 18 22 22 C 1.38266 * 120.11047 * 359.77464 * 21 20 19 23 23 C 1.38142 * 120.05550 * 359.97144 * 22 21 20 24 24 C 1.46846 * 111.19780 * 61.74478 * 14 13 12 25 25 H 0.96994 * 120.00034 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.51952 * 302.30623 * 11 9 7 27 27 H 1.09002 * 109.52604 * 62.43444 * 11 9 7 28 28 H 1.08993 * 109.50112 * 297.71243 * 12 11 9 29 29 H 1.08992 * 109.50394 * 177.58991 * 12 11 9 30 30 H 1.09008 * 109.45841 * 180.80263 * 13 12 11 31 31 H 1.09003 * 109.46290 * 60.84246 * 13 12 11 32 32 H 1.08998 * 109.47354 * 53.94952 * 15 14 13 33 33 H 1.09001 * 109.47115 * 173.95752 * 15 14 13 34 34 H 1.09000 * 109.47252 * 184.99852 * 16 15 14 35 35 H 1.09000 * 109.46868 * 304.99886 * 16 15 14 36 36 H 1.07995 * 120.03016 * 359.97438 * 19 18 17 37 37 H 1.08006 * 119.97238 * 180.23426 * 20 19 18 38 38 H 1.07995 * 119.94456 * 179.74756 * 21 20 19 39 39 H 1.07999 * 119.97185 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.03156 * 180.02562 * 23 22 21 41 41 H 1.09009 * 109.46169 * 58.27021 * 24 14 13 42 42 H 1.08995 * 109.46669 * 178.25121 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6224 -2.5570 -0.8890 11 6 0.3746 -2.5835 1.2522 12 6 -0.3410 -3.9370 1.2748 13 6 0.6990 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0201 15 6 2.4282 -6.0739 -0.1194 16 6 3.4588 -6.0404 1.0110 17 8 2.7990 -6.2374 2.2631 18 6 3.5768 -6.2348 3.3775 19 6 4.9477 -6.0522 3.2675 20 6 5.7355 -6.0448 4.4023 21 6 5.1603 -6.2295 5.6460 22 6 3.7950 -6.4173 5.7577 23 6 3.0021 -6.4204 4.6265 24 6 2.2449 -3.6630 -0.0012 25 1 -0.4850 0.8400 0.0004 26 1 0.9988 -2.4866 2.1406 27 1 -0.3627 -1.7808 1.2357 28 1 -0.9947 -4.0175 0.4064 29 1 -0.9334 -4.0203 2.1859 30 1 0.1922 -6.0241 1.2387 31 1 1.3437 -4.9862 2.1131 32 1 1.8626 -7.0042 -0.0677 33 1 2.9402 -6.0127 -1.0798 34 1 4.1918 -6.8325 0.8580 35 1 3.9633 -5.0742 1.0141 36 1 5.3981 -5.9124 2.2960 37 1 6.8023 -5.8989 4.3176 38 1 5.7784 -6.2274 6.5315 39 1 3.3481 -6.5618 6.7303 40 1 1.9358 -6.5667 4.7143 41 1 2.8823 -3.5966 0.8806 42 1 2.8608 -3.6139 -0.8991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925426.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:14 Heat of formation + Delta-G solvation = -31.266908 kcal Electronic energy + Delta-G solvation = -21758.723832 eV Core-core repulsion = 18702.894228 eV Total energy + Delta-G solvation = -3055.829603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27956 -39.81618 -38.13675 -35.67344 -33.82432 -31.96990 -31.67172 -30.89250 -29.42792 -26.93972 -25.56656 -23.67364 -23.45425 -22.89529 -22.03469 -20.21542 -19.24636 -18.48135 -17.32885 -17.05781 -16.73145 -16.54770 -15.89405 -15.74488 -15.38171 -14.94618 -14.79704 -14.34271 -14.33856 -14.24915 -13.88357 -13.56870 -13.15370 -13.02508 -12.87160 -12.74967 -12.60567 -12.47352 -12.33646 -12.01863 -11.81694 -11.65206 -11.43681 -11.37759 -10.85198 -10.66136 -10.37979 -9.94627 -9.19340 -8.99141 -8.08062 -6.22260 0.39938 0.51467 1.40275 1.40658 1.50740 2.23679 2.42492 2.86161 3.18662 3.18955 3.84243 3.95705 4.01857 4.12398 4.21273 4.26656 4.30539 4.32788 4.40680 4.50550 4.52185 4.61914 4.67627 4.78547 4.82033 4.93470 5.02031 5.05139 5.09855 5.16015 5.20519 5.38281 5.43173 5.48778 5.52484 5.59984 5.63283 5.87718 5.97892 6.12064 6.20763 6.36990 6.45735 6.47958 6.90487 7.45473 8.96816 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.004951 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.386889 B = 5654.469119 C = 6277.761326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.535 4.535 8 H 0.050 0.950 9 C 0.052 3.948 10 H -0.003 1.003 11 C -0.100 4.100 12 C -0.113 4.113 13 C 0.068 3.932 14 N -0.544 5.544 15 C 0.058 3.942 16 C 0.021 3.979 17 O -0.317 6.317 18 C 0.106 3.894 19 C -0.224 4.224 20 C -0.088 4.088 21 C -0.167 4.167 22 C -0.084 4.084 23 C -0.174 4.174 24 C 0.082 3.918 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.014 0.986 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.002 -15.251 8.074 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.185 4.185 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.069 0.931 9 C 0.033 3.967 10 H 0.016 0.984 11 C -0.139 4.139 12 C -0.151 4.151 13 C -0.059 4.059 14 N -0.268 5.268 15 C -0.070 4.070 16 C -0.055 4.055 17 O -0.231 6.231 18 C 0.061 3.939 19 C -0.243 4.243 20 C -0.106 4.106 21 C -0.185 4.185 22 C -0.102 4.102 23 C -0.193 4.193 24 C -0.046 4.046 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.113 0.887 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.149 0.851 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.032 0.968 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.314 -15.165 7.632 18.903 hybrid contribution 0.884 1.319 0.386 1.634 sum 9.198 -13.846 8.018 18.455 Atomic orbital electron populations 1.70041 1.07204 1.27043 1.51221 1.25723 0.95644 1.02321 0.94784 0.85633 0.78673 0.79492 0.78321 1.19904 1.20894 1.19446 1.21506 0.92894 0.92196 1.50789 0.93139 1.18586 0.93046 0.91493 0.93559 0.98446 1.21422 0.98972 0.96176 0.97281 1.21627 0.97750 0.95259 1.00470 1.22141 0.94953 0.97912 0.90931 1.62063 1.24068 1.02131 1.38493 1.22511 0.93046 0.94971 0.96479 1.23749 0.97977 1.01417 0.82396 1.86252 1.36113 1.86837 1.13886 1.19461 0.90452 0.96310 0.87702 1.21478 0.92870 1.08974 1.00939 1.21302 1.00713 0.96627 0.91960 1.21418 0.95373 1.03383 0.98286 1.21312 0.93932 0.96693 0.98277 1.20720 1.01204 1.07091 0.90253 1.21974 0.95362 0.88961 0.98272 0.93081 0.96609 0.92562 0.93245 0.91878 0.90527 0.93569 0.88654 0.87140 0.89672 0.92946 0.85147 0.83742 0.83400 0.83037 0.85254 0.96830 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.37 11.36 21.45 0.24 -54.13 16 2 C 0.01 0.79 5.30 84.66 0.45 1.24 16 3 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.54 -30.37 8.56 25.60 0.22 -30.15 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.05 2.73 2.26 -11.49 -0.03 2.70 16 10 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 11 C -0.10 -5.06 5.03 30.68 0.15 -4.91 16 12 C -0.11 -4.67 6.09 30.65 0.19 -4.48 16 13 C 0.07 2.46 4.61 86.33 0.40 2.86 16 14 N -0.54 -19.77 4.86 -896.35 -4.35 -24.13 16 15 C 0.06 1.55 5.93 86.31 0.51 2.06 16 16 C 0.02 0.55 4.52 71.98 0.33 0.88 16 17 O -0.32 -9.41 6.81 -92.41 -0.63 -10.04 16 18 C 0.11 2.99 6.69 22.51 0.15 3.14 16 19 C -0.22 -5.60 9.04 22.37 0.20 -5.40 16 20 C -0.09 -1.84 10.04 22.25 0.22 -1.62 16 21 C -0.17 -3.19 10.04 22.28 0.22 -2.97 16 22 C -0.08 -1.74 10.04 22.25 0.22 -1.51 16 23 C -0.17 -4.46 9.99 22.37 0.22 -4.23 16 24 C 0.08 3.51 4.06 86.32 0.35 3.86 16 25 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 3.19 6.16 -2.39 -0.01 3.17 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.08 2.44 8.06 -2.38 -0.02 2.42 16 31 H 0.05 1.76 5.54 -2.39 -0.01 1.75 16 32 H 0.10 2.25 8.06 -2.39 -0.02 2.24 16 33 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.09 1.74 7.65 -2.39 -0.02 1.72 16 35 H 0.05 1.54 5.77 -2.39 -0.01 1.53 16 36 H 0.13 2.98 6.30 -2.91 -0.02 2.96 16 37 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 38 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 41 H 0.01 0.60 6.50 -2.38 -0.02 0.58 16 42 H 0.06 2.51 8.12 -2.39 -0.02 2.49 16 Total: -1.00 -65.36 327.26 2.09 -63.27 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.99 Total: 17.06 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.82 Total: -38.53 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -4.11 Total: -78.25 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: -0.63 Total: -10.04 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.36 2.09 -63.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925426.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.005 kcal (2) G-P(sol) polarization free energy of solvation -65.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds