Wall clock time and date at job start Mon Mar 30 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48501 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47055 * 300.00357 * 3 2 1 6 6 H 1.48502 * 109.47440 * 60.00288 * 3 2 1 7 7 C 1.37884 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.53591 * 300.10699 * 9 7 2 11 11 C 1.53119 * 109.49195 * 60.20542 * 9 7 2 12 12 C 1.53122 * 109.15291 * 177.60396 * 11 9 7 13 13 C 1.53037 * 109.27733 * 302.34092 * 12 11 9 14 14 N 1.46848 * 109.52530 * 59.17673 * 13 12 11 15 15 C 1.46893 * 111.00384 * 174.15994 * 14 13 12 16 16 C 1.53006 * 109.47290 * 199.92996 * 15 14 13 17 17 O 1.42901 * 109.47011 * 64.58850 * 16 15 14 18 18 C 1.35895 * 116.99831 * 180.02562 * 17 16 15 19 19 C 1.38729 * 120.05975 * 359.71769 * 18 17 16 20 20 C 1.38141 * 119.94568 * 179.70241 * 19 18 17 21 21 C 1.38269 * 120.05506 * 0.60010 * 20 19 18 22 22 C 1.38263 * 120.10940 * 359.67631 * 21 20 19 23 23 C 1.38147 * 120.05914 * 0.02618 * 22 21 20 24 24 C 1.46847 * 111.19994 * 298.25933 * 14 13 12 25 25 H 0.97007 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.52969 * 57.70211 * 11 9 7 27 27 H 1.08996 * 109.57754 * 297.53784 * 11 9 7 28 28 H 1.08996 * 109.50303 * 182.40313 * 12 11 9 29 29 H 1.08996 * 109.53462 * 62.30043 * 12 11 9 30 30 H 1.09005 * 109.46561 * 299.16451 * 13 12 11 31 31 H 1.08998 * 109.45889 * 179.18740 * 13 12 11 32 32 H 1.08996 * 109.47299 * 319.93059 * 15 14 13 33 33 H 1.09001 * 109.47479 * 79.93036 * 15 14 13 34 34 H 1.08998 * 109.46726 * 184.58511 * 16 15 14 35 35 H 1.08996 * 109.46829 * 304.58423 * 16 15 14 36 36 H 1.08007 * 120.02337 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.97131 * 180.32102 * 20 19 18 38 38 H 1.07995 * 119.94283 * 179.70319 * 21 20 19 39 39 H 1.08002 * 119.96812 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.03130 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.46721 * 181.75373 * 24 14 13 42 42 H 1.09001 * 109.46063 * 301.73710 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6228 -2.5574 0.8883 11 6 0.3738 -2.5827 -1.2528 12 6 -0.3421 -3.9361 -1.2754 13 6 0.6977 -5.0584 -1.2389 14 7 1.5108 -4.9347 -0.0224 15 6 2.4277 -6.0740 0.1162 16 6 2.8828 -6.1883 1.5725 17 8 1.7587 -6.4942 2.4002 18 6 1.9921 -6.6301 3.7320 19 6 3.2775 -6.4780 4.2313 20 6 3.5110 -6.6106 5.5864 21 6 2.4671 -6.9068 6.4433 22 6 1.1861 -7.0645 5.9474 23 6 0.9463 -6.9269 4.5939 24 6 2.2447 -3.6630 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 0.9974 -2.4857 -2.1416 27 1 -0.3640 -1.7806 -1.2362 28 1 -0.9351 -4.0189 -2.1862 29 1 -0.9957 -4.0172 -0.4069 30 1 1.3419 -4.9853 -2.1152 31 1 0.1907 -6.0233 -1.2403 32 1 1.9156 -6.9903 -0.1775 33 1 3.2960 -5.9217 -0.5249 34 1 3.6250 -6.9818 1.6599 35 1 3.3221 -5.2431 1.8910 36 1 4.0940 -6.2511 3.5618 37 1 4.5106 -6.4872 5.9762 38 1 2.6525 -7.0148 7.5017 39 1 0.3725 -7.2963 6.6187 40 1 -0.0545 -7.0498 4.2071 41 1 2.8613 -3.6144 0.8963 42 1 2.8814 -3.5964 -0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259925430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:18 Heat of formation + Delta-G solvation = -18.035788 kcal Electronic energy + Delta-G solvation = -21251.267100 eV Core-core repulsion = 18196.011241 eV Total energy + Delta-G solvation = -3055.255859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.95946 -38.30115 -37.08805 -33.88893 -32.10944 -30.96539 -29.88462 -29.85189 -28.30267 -24.95886 -24.01271 -22.47881 -22.13492 -21.32798 -20.61632 -18.64776 -18.10953 -16.50737 -16.03283 -15.86068 -15.57251 -14.73293 -14.60391 -14.37858 -14.10470 -13.58030 -13.33187 -13.18706 -12.91735 -12.68550 -12.43326 -12.15768 -11.91249 -11.66469 -11.50080 -11.24576 -10.96236 -10.72980 -10.69352 -10.63201 -10.51877 -10.07541 -9.79596 -9.43599 -9.01951 -8.96407 -8.67062 -8.28475 -8.06787 -7.64297 -5.95484 -4.01645 1.38182 1.53171 3.30711 3.38701 3.39572 3.42072 3.85725 4.35405 4.51191 4.84765 4.92032 5.13484 5.15080 5.23412 5.34505 5.40559 5.42887 5.52589 5.60497 5.70750 5.78610 5.87206 5.90592 6.04920 6.10301 6.26343 6.38192 6.40010 6.45602 6.51588 6.55795 6.74543 6.77167 6.84732 6.98986 7.24955 7.41334 7.60452 7.69557 7.77309 7.83018 8.11681 8.20169 8.50069 9.02616 9.62540 11.10603 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.004546 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.474466 B = 6157.516706 C = 7062.548693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.065 3.935 14 N -0.532 5.532 15 C 0.055 3.945 16 C 0.067 3.933 17 O -0.293 6.293 18 C 0.141 3.859 19 C -0.214 4.214 20 C -0.081 4.081 21 C -0.169 4.169 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.066 3.934 25 H 0.259 0.741 26 H 0.029 0.971 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.056 0.944 42 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.427 -14.896 5.887 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.062 4.062 14 N -0.257 5.257 15 C -0.074 4.074 16 C -0.008 4.008 17 O -0.205 6.205 18 C 0.095 3.905 19 C -0.233 4.233 20 C -0.099 4.099 21 C -0.188 4.188 22 C -0.100 4.100 23 C -0.174 4.174 24 C -0.061 4.061 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.075 0.925 42 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 3.782 -14.790 6.154 16.459 hybrid contribution 1.334 1.049 -0.693 1.833 sum 5.116 -13.740 5.461 15.646 Atomic orbital electron populations 1.69906 1.05833 1.26175 1.50702 1.24931 0.94811 0.98916 0.95152 0.86590 0.80109 0.84046 0.77549 1.19898 1.21092 1.21031 1.21181 0.92787 0.90712 1.50640 0.92890 1.18653 0.92619 0.90191 0.94912 0.94732 1.21647 1.00004 0.94773 0.98387 1.21673 0.97213 0.96402 1.00228 1.22024 0.95502 0.98869 0.89840 1.61948 1.23802 1.01881 1.38053 1.22082 0.96367 0.95954 0.92997 1.22898 0.87341 0.99948 0.90641 1.86205 1.35867 1.84253 1.14204 1.19142 0.93342 0.94069 0.83984 1.21287 0.96231 1.08807 0.96942 1.20912 0.99004 0.97299 0.92736 1.20986 0.93160 1.05006 0.99612 1.20935 0.96937 0.97866 0.94285 1.20475 0.98491 1.05904 0.92519 1.22374 0.96493 0.88794 0.98435 0.93123 0.95233 0.89144 0.93546 0.92005 0.96005 0.92353 0.90565 0.93078 0.92410 0.91560 0.85663 0.86161 0.86309 0.85682 0.85234 0.92508 0.96327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 11.36 55.43 0.63 -24.96 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.11 -2.64 5.02 -26.61 -0.13 -2.77 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.07 1.16 5.43 -3.83 -0.02 1.14 16 14 N -0.53 -9.95 4.53 -234.67 -1.06 -11.01 16 15 C 0.05 0.81 5.39 -3.82 -0.02 0.78 16 16 C 0.07 0.95 4.93 37.16 0.18 1.13 16 17 O -0.29 -4.76 10.08 -19.41 -0.20 -4.96 16 18 C 0.14 2.11 6.69 -39.22 -0.26 1.85 16 19 C -0.21 -2.83 9.04 -39.44 -0.36 -3.18 16 20 C -0.08 -0.95 10.04 -39.61 -0.40 -1.34 16 21 C -0.17 -1.88 10.04 -39.56 -0.40 -2.28 16 22 C -0.08 -0.95 10.04 -39.61 -0.40 -1.35 16 23 C -0.16 -2.12 9.99 -39.43 -0.39 -2.52 16 24 C 0.07 1.40 4.51 -3.83 -0.02 1.39 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 32 H 0.08 1.03 7.79 -51.93 -0.40 0.62 16 33 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 34 H 0.06 0.65 7.65 -51.93 -0.40 0.25 16 35 H 0.07 1.00 6.24 -51.93 -0.32 0.67 16 36 H 0.13 1.48 6.30 -52.48 -0.33 1.15 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.06 1.20 6.65 -51.93 -0.35 0.86 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 334.03 15.07 5.03 5.03 Total: -1.00 -29.93 334.03 -10.31 -40.24 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.72 Total: 0.60 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -2.97 Total: -21.31 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: -0.43 Total: -35.98 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.20 Total: -4.96 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.93 -10.31 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.204 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds