Wall clock time and date at job start Mon Mar 30 2020 01:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86795 * 120.00330 * 2 1 4 4 H 1.48501 * 109.47354 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47055 * 300.00357 * 3 2 1 6 6 H 1.48502 * 109.47440 * 60.00288 * 3 2 1 7 7 C 1.37884 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99867 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.53591 * 300.10699 * 9 7 2 11 11 C 1.53119 * 109.49195 * 60.20542 * 9 7 2 12 12 C 1.53122 * 109.15291 * 177.60396 * 11 9 7 13 13 C 1.53037 * 109.27733 * 302.34092 * 12 11 9 14 14 N 1.46848 * 109.52530 * 59.17673 * 13 12 11 15 15 C 1.46893 * 111.00384 * 174.15994 * 14 13 12 16 16 C 1.53006 * 109.47290 * 199.92996 * 15 14 13 17 17 O 1.42901 * 109.47011 * 64.58850 * 16 15 14 18 18 C 1.35895 * 116.99831 * 180.02562 * 17 16 15 19 19 C 1.38729 * 120.05975 * 359.71769 * 18 17 16 20 20 C 1.38141 * 119.94568 * 179.70241 * 19 18 17 21 21 C 1.38269 * 120.05506 * 0.60010 * 20 19 18 22 22 C 1.38263 * 120.10940 * 359.67631 * 21 20 19 23 23 C 1.38147 * 120.05914 * 0.02618 * 22 21 20 24 24 C 1.46847 * 111.19994 * 298.25933 * 14 13 12 25 25 H 0.97007 * 119.99901 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.52969 * 57.70211 * 11 9 7 27 27 H 1.08996 * 109.57754 * 297.53784 * 11 9 7 28 28 H 1.08996 * 109.50303 * 182.40313 * 12 11 9 29 29 H 1.08996 * 109.53462 * 62.30043 * 12 11 9 30 30 H 1.09005 * 109.46561 * 299.16451 * 13 12 11 31 31 H 1.08998 * 109.45889 * 179.18740 * 13 12 11 32 32 H 1.08996 * 109.47299 * 319.93059 * 15 14 13 33 33 H 1.09001 * 109.47479 * 79.93036 * 15 14 13 34 34 H 1.08998 * 109.46726 * 184.58511 * 16 15 14 35 35 H 1.08996 * 109.46829 * 304.58423 * 16 15 14 36 36 H 1.08007 * 120.02337 * 0.02562 * 19 18 17 37 37 H 1.08001 * 119.97131 * 180.32102 * 20 19 18 38 38 H 1.07995 * 119.94283 * 179.70319 * 21 20 19 39 39 H 1.08002 * 119.96812 * 179.97438 * 22 21 20 40 40 H 1.07994 * 120.03130 * 180.02562 * 23 22 21 41 41 H 1.08995 * 109.46721 * 181.75373 * 24 14 13 42 42 H 1.09001 * 109.46063 * 301.73710 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6228 -2.5574 0.8883 11 6 0.3738 -2.5827 -1.2528 12 6 -0.3421 -3.9361 -1.2754 13 6 0.6977 -5.0584 -1.2389 14 7 1.5108 -4.9347 -0.0224 15 6 2.4277 -6.0740 0.1162 16 6 2.8828 -6.1883 1.5725 17 8 1.7587 -6.4942 2.4002 18 6 1.9921 -6.6301 3.7320 19 6 3.2775 -6.4780 4.2313 20 6 3.5110 -6.6106 5.5864 21 6 2.4671 -6.9068 6.4433 22 6 1.1861 -7.0645 5.9474 23 6 0.9463 -6.9269 4.5939 24 6 2.2447 -3.6630 -0.0011 25 1 -0.4850 0.8401 0.0004 26 1 0.9974 -2.4857 -2.1416 27 1 -0.3640 -1.7806 -1.2362 28 1 -0.9351 -4.0189 -2.1862 29 1 -0.9957 -4.0172 -0.4069 30 1 1.3419 -4.9853 -2.1152 31 1 0.1907 -6.0233 -1.2403 32 1 1.9156 -6.9903 -0.1775 33 1 3.2960 -5.9217 -0.5249 34 1 3.6250 -6.9818 1.6599 35 1 3.3221 -5.2431 1.8910 36 1 4.0940 -6.2511 3.5618 37 1 4.5106 -6.4872 5.9762 38 1 2.6525 -7.0148 7.5017 39 1 0.3725 -7.2963 6.6187 40 1 -0.0545 -7.0498 4.2071 41 1 2.8613 -3.6144 0.8963 42 1 2.8814 -3.5964 -0.8833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259925430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:17 Heat of formation + Delta-G solvation = -35.056835 kcal Electronic energy + Delta-G solvation = -21252.005188 eV Core-core repulsion = 18196.011241 eV Total energy + Delta-G solvation = -3055.993947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00177 -39.79113 -38.18923 -35.67958 -33.82977 -31.93490 -31.69666 -30.97106 -29.52895 -26.96986 -25.36247 -23.63913 -23.23337 -23.05486 -21.82975 -20.37997 -19.17241 -18.46054 -17.29955 -16.99889 -16.62508 -16.54884 -15.95605 -15.61344 -15.44272 -14.92979 -14.84312 -14.48392 -14.27159 -14.18483 -13.86511 -13.60513 -13.36417 -13.02446 -12.87263 -12.72147 -12.51799 -12.39818 -12.28990 -11.84031 -11.80453 -11.70440 -11.56883 -11.34969 -10.86144 -10.64741 -10.38830 -9.90323 -9.10245 -9.06246 -8.08741 -6.23331 0.44293 0.56877 1.39183 1.40538 1.51993 2.35793 2.42080 2.90796 3.05799 3.18286 3.88046 3.99846 4.04977 4.12505 4.22748 4.28697 4.30678 4.36472 4.41204 4.54755 4.55813 4.59396 4.64570 4.73523 4.80560 4.83220 4.89329 5.00117 5.11240 5.13551 5.19160 5.39637 5.44306 5.51562 5.52889 5.62706 5.63998 5.93023 5.97408 6.12872 6.21018 6.35278 6.45330 6.60349 6.90058 7.44774 8.96337 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.004546 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.474466 B = 6157.516706 C = 7062.548693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.281 1.281 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.053 3.947 10 H -0.011 1.011 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.069 3.931 14 N -0.549 5.549 15 C 0.055 3.945 16 C 0.067 3.933 17 O -0.318 6.318 18 C 0.111 3.889 19 C -0.226 4.226 20 C -0.086 4.086 21 C -0.169 4.169 22 C -0.084 4.084 23 C -0.178 4.178 24 C 0.083 3.917 25 H 0.260 0.740 26 H 0.025 0.975 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.033 0.967 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.134 0.866 37 H 0.147 0.853 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.126 0.874 41 H 0.052 0.948 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 -16.140 6.304 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.034 3.966 10 H 0.007 0.993 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.059 4.059 14 N -0.274 5.274 15 C -0.072 4.072 16 C -0.008 4.008 17 O -0.232 6.232 18 C 0.065 3.935 19 C -0.244 4.244 20 C -0.104 4.104 21 C -0.187 4.187 22 C -0.102 4.102 23 C -0.197 4.197 24 C -0.045 4.045 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.068 0.932 36 H 0.152 0.848 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.070 0.930 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 5.223 -16.054 6.571 18.116 hybrid contribution 0.863 1.406 -0.738 1.807 sum 6.086 -14.647 5.834 16.900 Atomic orbital electron populations 1.70059 1.07275 1.26986 1.51277 1.25743 0.95643 1.02411 0.94759 0.85559 0.79117 0.79686 0.77610 1.19016 1.20462 1.20740 1.21555 0.92972 0.92156 1.50729 0.92973 1.18570 0.93020 0.91510 0.93530 0.99329 1.21448 0.99066 0.96229 0.97364 1.21586 0.97634 0.95018 1.00681 1.22025 0.94997 0.99003 0.89853 1.61853 1.24817 1.01894 1.38864 1.22209 0.96497 0.94775 0.93767 1.22956 0.87540 1.00265 0.90027 1.86148 1.37052 1.84831 1.15147 1.19453 0.94540 0.95776 0.83716 1.21496 0.95833 1.09022 0.98072 1.21307 1.00577 0.96387 0.92162 1.21409 0.92659 1.03476 1.01116 1.21295 0.98263 0.96900 0.93702 1.20709 0.98341 1.06958 0.93656 1.21996 0.95259 0.88987 0.98254 0.93097 0.95569 0.92605 0.91084 0.93719 0.94928 0.89449 0.88686 0.91199 0.89329 0.93192 0.84846 0.83564 0.83350 0.83103 0.85610 0.92964 0.96144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.62 11.36 21.45 0.24 -54.37 16 2 C 0.01 0.74 5.30 84.66 0.45 1.19 16 3 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 7 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.05 2.77 2.26 -11.49 -0.03 2.74 16 10 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 11 C -0.10 -5.07 5.02 30.67 0.15 -4.91 16 12 C -0.11 -4.42 6.09 30.65 0.19 -4.24 16 13 C 0.07 2.32 5.43 86.33 0.47 2.79 16 14 N -0.55 -20.13 4.53 -896.36 -4.06 -24.19 16 15 C 0.06 1.52 5.39 86.31 0.47 1.98 16 16 C 0.07 1.84 4.93 71.98 0.35 2.19 16 17 O -0.32 -10.39 10.08 -92.37 -0.93 -11.32 16 18 C 0.11 3.32 6.69 22.51 0.15 3.47 16 19 C -0.23 -5.78 9.04 22.36 0.20 -5.58 16 20 C -0.09 -1.84 10.04 22.25 0.22 -1.61 16 21 C -0.17 -3.33 10.04 22.28 0.22 -3.11 16 22 C -0.08 -1.82 10.04 22.25 0.22 -1.59 16 23 C -0.18 -4.89 9.99 22.37 0.22 -4.66 16 24 C 0.08 3.55 4.51 86.33 0.39 3.94 16 25 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 26 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 3.12 6.17 -2.39 -0.01 3.10 16 28 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 2.48 7.93 -2.39 -0.02 2.46 16 32 H 0.09 2.28 7.79 -2.39 -0.02 2.26 16 33 H 0.07 1.69 8.00 -2.39 -0.02 1.67 16 34 H 0.09 1.83 7.65 -2.39 -0.02 1.81 16 35 H 0.05 1.50 6.24 -2.39 -0.01 1.49 16 36 H 0.13 3.04 6.30 -2.91 -0.02 3.02 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 38 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.05 2.25 6.65 -2.39 -0.02 2.24 16 42 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -67.08 334.03 2.17 -64.92 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.98 Total: 16.09 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 3.91 Total: -37.58 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.81 Total: -78.56 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.93 Total: -11.32 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -67.08 2.17 -64.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259925430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.859 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds