Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99642 * 2 1 4 4 H 1.48496 * 109.47264 * 269.99670 * 3 2 1 5 5 H 1.48501 * 109.47338 * 30.00038 * 3 2 1 6 6 H 1.48501 * 109.46959 * 150.00053 * 3 2 1 7 7 C 1.37872 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99736 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00206 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00207 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.50294 * 329.92468 * 11 10 9 13 13 C 1.53115 * 109.50305 * 89.99922 * 11 10 9 14 14 C 1.53124 * 109.15950 * 177.63558 * 13 11 10 15 15 C 1.53032 * 109.27817 * 302.35012 * 14 13 11 16 16 N 1.46847 * 109.52682 * 59.17958 * 15 14 13 17 17 C 1.46899 * 111.00044 * 174.15899 * 16 15 14 18 18 C 1.50703 * 109.47107 * 66.04660 * 17 16 15 19 19 C 1.38234 * 119.99770 * 269.72522 * 18 17 16 20 20 C 1.38239 * 119.99901 * 179.76875 * 19 18 17 21 21 C 1.38238 * 119.99492 * 0.48004 * 20 19 18 22 22 C 1.38225 * 120.00505 * 359.79428 * 21 20 19 23 23 C 1.38232 * 119.99860 * 89.99965 * 18 17 16 24 24 C 1.46842 * 111.19604 * 298.25798 * 16 15 14 25 25 H 0.97000 * 120.00355 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46632 * 60.00772 * 9 7 2 27 27 H 1.08996 * 109.47128 * 300.00484 * 9 7 2 28 28 H 1.09004 * 109.52022 * 57.73497 * 13 11 10 29 29 H 1.09001 * 109.52836 * 297.54117 * 13 11 10 30 30 H 1.08997 * 109.49990 * 182.40712 * 14 13 11 31 31 H 1.08997 * 109.50169 * 62.29300 * 14 13 11 32 32 H 1.09003 * 109.46697 * 299.15746 * 15 14 13 33 33 H 1.09005 * 109.45482 * 179.19115 * 15 14 13 34 34 H 1.09002 * 109.47043 * 186.04640 * 17 16 15 35 35 H 1.09001 * 109.47354 * 306.04701 * 17 16 15 36 36 H 1.08001 * 120.00330 * 359.97438 * 19 18 17 37 37 H 1.07993 * 120.00120 * 180.25541 * 20 19 18 38 38 H 1.08006 * 119.99203 * 179.76993 * 21 20 19 39 39 H 1.07998 * 120.00220 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00407 * 0.02562 * 23 18 17 41 41 H 1.09002 * 109.46292 * 181.75922 * 24 16 15 42 42 H 1.09008 * 109.46217 * 301.72586 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9880 -2.5412 0.0001 11 6 5.4125 -2.6540 0.0001 12 1 5.8455 -1.7964 -0.5148 13 6 5.9221 -2.6942 1.4434 14 6 7.4426 -2.8745 1.4347 15 6 7.7951 -4.1558 0.6759 16 7 7.2869 -4.0677 -0.6990 17 6 7.7261 -5.2198 -1.4975 18 6 7.0896 -6.4756 -0.9598 19 6 7.7309 -7.2106 0.0196 20 6 7.1449 -8.3599 0.5162 21 6 5.9222 -8.7795 0.0262 22 6 5.2837 -8.0476 -0.9572 23 6 5.8673 -6.8954 -1.4502 24 6 5.8240 -3.9417 -0.7171 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6806 -0.8904 28 1 5.4593 -3.5290 1.9699 29 1 5.6689 -1.7604 1.9454 30 1 7.8063 -2.9468 2.4597 31 1 7.9075 -2.0204 0.9424 32 1 7.3414 -5.0111 1.1767 33 1 8.8780 -4.2795 0.6556 34 1 7.4275 -5.0770 -2.5360 35 1 8.8109 -5.3091 -1.4404 36 1 8.6882 -6.8852 0.3993 37 1 7.6439 -8.9319 1.2844 38 1 5.4662 -9.6795 0.4116 39 1 4.3287 -8.3756 -1.3403 40 1 5.3686 -6.3238 -2.2189 41 1 5.4750 -3.9100 -1.7493 42 1 5.3794 -4.7979 -0.2097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -23.998202 kcal Electronic energy + Delta-G solvation = -21396.904567 eV Core-core repulsion = 18341.390158 eV Total energy + Delta-G solvation = -3055.514409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10186 -38.44004 -36.44645 -33.61668 -32.57762 -31.12986 -30.64726 -29.86903 -27.59318 -26.44989 -23.20293 -23.01763 -22.13527 -21.72503 -21.11021 -19.53084 -16.96795 -16.87730 -16.04609 -15.62495 -15.43215 -15.22614 -14.65373 -14.41332 -14.28777 -14.18882 -13.60364 -13.53539 -12.92859 -12.79926 -12.68705 -12.48522 -12.33465 -12.17971 -11.66602 -11.38333 -11.11668 -11.02606 -10.93620 -10.84497 -10.64334 -10.38844 -10.10510 -9.84384 -9.17764 -8.99860 -8.89216 -8.80234 -8.44168 -8.31042 -6.11168 -4.10150 1.21284 1.29551 3.25561 3.32424 3.34409 3.60101 3.91205 4.36244 4.62629 4.66311 4.80950 4.88865 4.97502 5.03696 5.10111 5.11891 5.20178 5.23825 5.38288 5.49225 5.52833 5.62348 5.65937 5.70871 5.86961 5.89000 5.90986 5.93342 6.02002 6.14604 6.16857 6.33199 6.40922 6.41924 6.47470 6.56517 6.67853 6.89038 7.02420 7.05629 7.07536 7.60911 8.05366 8.67794 9.00102 9.48292 11.01880 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.004194 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.627192 B = 6675.057619 C = 7334.549549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.073 3.927 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.375 6.375 11 C 0.090 3.910 12 H 0.058 0.942 13 C -0.143 4.143 14 C -0.114 4.114 15 C 0.051 3.949 16 N -0.524 5.524 17 C 0.094 3.906 18 C -0.122 4.122 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.103 4.103 24 C 0.059 3.941 25 H 0.266 0.734 26 H 0.003 0.997 27 H -0.001 1.001 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.620 -13.757 -0.283 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.294 6.294 11 C 0.031 3.969 12 H 0.076 0.924 13 C -0.181 4.181 14 C -0.152 4.152 15 C -0.076 4.076 16 N -0.248 5.248 17 C -0.034 4.034 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.122 4.122 24 C -0.069 4.069 25 H 0.076 0.924 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.097 0.903 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.513 -13.322 -0.495 22.813 hybrid contribution 0.069 0.386 0.469 0.611 sum 18.582 -12.936 -0.026 22.641 Atomic orbital electron populations 1.69874 1.06064 1.27085 1.50407 1.24755 0.94784 0.98726 0.94618 0.86866 0.80395 0.83782 0.78838 1.19871 1.20773 1.19051 1.20898 0.88300 0.95299 1.51185 0.90007 1.20628 0.96033 0.79433 0.94309 1.87904 1.17170 1.29674 1.94607 1.21812 0.84125 0.96908 0.94049 0.92353 1.22104 0.94886 1.02653 0.98474 1.21543 0.96340 0.97815 0.99482 1.22171 0.99375 0.97607 0.88490 1.62245 1.11422 1.38472 1.12617 1.21257 0.99541 0.84706 0.97870 1.20696 0.96058 0.97705 0.97877 1.21038 0.99815 0.95122 0.97002 1.21122 0.96013 0.96985 1.00115 1.21157 0.95544 0.99959 0.97294 1.21200 0.99878 0.95367 0.97211 1.21169 0.94962 0.96207 0.99871 1.22083 0.86141 0.97488 1.01168 0.92369 0.97960 0.98350 0.91668 0.91531 0.91551 0.91237 0.94232 0.91077 0.89659 0.89898 0.86383 0.86308 0.86266 0.85964 0.85870 0.90341 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -15.60 9.99 -34.44 -0.34 -15.94 16 8 H 0.08 2.69 8.06 -52.48 -0.42 2.26 16 9 C 0.17 4.42 4.57 36.01 0.16 4.58 16 10 O -0.38 -8.91 9.98 -35.23 -0.35 -9.26 16 11 C 0.09 1.67 2.77 -26.65 -0.07 1.60 16 12 H 0.06 1.09 7.79 -51.93 -0.40 0.68 16 13 C -0.14 -2.34 5.62 -26.61 -0.15 -2.49 16 14 C -0.11 -1.44 6.09 -26.65 -0.16 -1.61 16 15 C 0.05 0.61 4.84 -3.84 -0.02 0.59 16 16 N -0.52 -6.74 4.86 -236.11 -1.15 -7.89 16 17 C 0.09 0.99 5.56 -4.98 -0.03 0.97 16 18 C -0.12 -1.35 4.03 -104.62 -0.42 -1.78 16 19 C -0.11 -1.14 8.13 -39.58 -0.32 -1.46 16 20 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 21 C -0.12 -1.25 10.05 -39.59 -0.40 -1.64 16 22 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 23 C -0.10 -1.21 8.02 -39.58 -0.32 -1.53 16 24 C 0.06 0.92 4.19 -3.84 -0.02 0.91 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.32 16 26 H 0.00 0.07 6.99 -51.93 -0.36 -0.29 16 27 H 0.00 -0.03 7.51 -51.93 -0.39 -0.42 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.07 1.14 7.94 -51.93 -0.41 0.72 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.04 0.50 6.56 -51.93 -0.34 0.15 16 33 H 0.07 0.70 8.06 -51.93 -0.42 0.28 16 34 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 35 H 0.08 0.74 8.00 -51.93 -0.42 0.33 16 36 H 0.12 1.01 8.05 -52.49 -0.42 0.59 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.40 8.02 -52.49 -0.42 0.98 16 41 H 0.08 1.24 8.12 -51.93 -0.42 0.82 16 42 H 0.05 0.79 6.47 -51.92 -0.34 0.46 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -32.05 333.01 -10.25 -42.30 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.89 Total: -0.95 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -2.98 Total: -19.08 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: -0.37 Total: -34.94 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.35 Total: -9.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.05 -10.25 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.299 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds