Wall clock time and date at job start Mon Mar 30 2020 01:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99642 * 2 1 4 4 H 1.48496 * 109.47264 * 269.99670 * 3 2 1 5 5 H 1.48501 * 109.47338 * 30.00038 * 3 2 1 6 6 H 1.48501 * 109.46959 * 150.00053 * 3 2 1 7 7 C 1.37872 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99736 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00206 * 179.97438 * 7 2 1 10 10 O 1.42900 * 109.47125 * 180.02562 * 9 7 2 11 11 C 1.42898 * 114.00207 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.50294 * 329.92468 * 11 10 9 13 13 C 1.53115 * 109.50305 * 89.99922 * 11 10 9 14 14 C 1.53124 * 109.15950 * 177.63558 * 13 11 10 15 15 C 1.53032 * 109.27817 * 302.35012 * 14 13 11 16 16 N 1.46847 * 109.52682 * 59.17958 * 15 14 13 17 17 C 1.46899 * 111.00044 * 174.15899 * 16 15 14 18 18 C 1.50703 * 109.47107 * 66.04660 * 17 16 15 19 19 C 1.38234 * 119.99770 * 269.72522 * 18 17 16 20 20 C 1.38239 * 119.99901 * 179.76875 * 19 18 17 21 21 C 1.38238 * 119.99492 * 0.48004 * 20 19 18 22 22 C 1.38225 * 120.00505 * 359.79428 * 21 20 19 23 23 C 1.38232 * 119.99860 * 89.99965 * 18 17 16 24 24 C 1.46842 * 111.19604 * 298.25798 * 16 15 14 25 25 H 0.97000 * 120.00355 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.46632 * 60.00772 * 9 7 2 27 27 H 1.08996 * 109.47128 * 300.00484 * 9 7 2 28 28 H 1.09004 * 109.52022 * 57.73497 * 13 11 10 29 29 H 1.09001 * 109.52836 * 297.54117 * 13 11 10 30 30 H 1.08997 * 109.49990 * 182.40712 * 14 13 11 31 31 H 1.08997 * 109.50169 * 62.29300 * 14 13 11 32 32 H 1.09003 * 109.46697 * 299.15746 * 15 14 13 33 33 H 1.09005 * 109.45482 * 179.19115 * 15 14 13 34 34 H 1.09002 * 109.47043 * 186.04640 * 17 16 15 35 35 H 1.09001 * 109.47354 * 306.04701 * 17 16 15 36 36 H 1.08001 * 120.00330 * 359.97438 * 19 18 17 37 37 H 1.07993 * 120.00120 * 180.25541 * 20 19 18 38 38 H 1.08006 * 119.99203 * 179.76993 * 21 20 19 39 39 H 1.07998 * 120.00220 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.00407 * 0.02562 * 23 18 17 41 41 H 1.09002 * 109.46292 * 181.75922 * 24 16 15 42 42 H 1.09008 * 109.46217 * 301.72586 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 8 3.9880 -2.5412 0.0001 11 6 5.4125 -2.6540 0.0001 12 1 5.8455 -1.7964 -0.5148 13 6 5.9221 -2.6942 1.4434 14 6 7.4426 -2.8745 1.4347 15 6 7.7951 -4.1558 0.6759 16 7 7.2869 -4.0677 -0.6990 17 6 7.7261 -5.2198 -1.4975 18 6 7.0896 -6.4756 -0.9598 19 6 7.7309 -7.2106 0.0196 20 6 7.1449 -8.3599 0.5162 21 6 5.9222 -8.7795 0.0262 22 6 5.2837 -8.0476 -0.9572 23 6 5.8673 -6.8954 -1.4502 24 6 5.8240 -3.9417 -0.7171 25 1 -0.4851 0.8400 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8746 -0.6806 -0.8904 28 1 5.4593 -3.5290 1.9699 29 1 5.6689 -1.7604 1.9454 30 1 7.8063 -2.9468 2.4597 31 1 7.9075 -2.0204 0.9424 32 1 7.3414 -5.0111 1.1767 33 1 8.8780 -4.2795 0.6556 34 1 7.4275 -5.0770 -2.5360 35 1 8.8109 -5.3091 -1.4404 36 1 8.6882 -6.8852 0.3993 37 1 7.6439 -8.9319 1.2844 38 1 5.4662 -9.6795 0.4116 39 1 4.3287 -8.3756 -1.3403 40 1 5.3686 -6.3238 -2.2189 41 1 5.4750 -3.9100 -1.7493 42 1 5.3794 -4.7979 -0.2097 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:35 Heat of formation + Delta-G solvation = -44.386266 kcal Electronic energy + Delta-G solvation = -21397.788660 eV Core-core repulsion = 18341.390158 eV Total energy + Delta-G solvation = -3056.398502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.07205 -39.60667 -37.92843 -35.04853 -34.47312 -32.01188 -31.56971 -31.27967 -29.56068 -27.40039 -24.41256 -24.22842 -23.60279 -23.01227 -22.07842 -20.71222 -19.10290 -17.81417 -17.43581 -17.05493 -16.44032 -16.29479 -16.10686 -15.92973 -15.59815 -15.30097 -14.76616 -14.74665 -14.34378 -14.14098 -13.98762 -13.78762 -13.51668 -13.29846 -13.02632 -12.86231 -12.52540 -12.22415 -12.12045 -11.89413 -11.84910 -11.82786 -11.72284 -11.49206 -11.33325 -10.92563 -10.28742 -9.81195 -9.71256 -9.34332 -8.39872 -6.48199 0.40117 0.48394 1.31524 1.34492 1.45534 2.27339 2.58182 2.90559 2.92630 3.38157 3.78367 3.80826 3.93968 3.96462 4.05319 4.13764 4.23603 4.26990 4.27548 4.47072 4.50393 4.58276 4.60556 4.65726 4.73302 4.75183 4.88380 4.90636 4.94869 4.97689 5.04100 5.11566 5.13773 5.22164 5.35394 5.42124 5.54016 5.60792 5.62994 5.88605 6.02482 6.10055 6.11770 6.55530 6.73097 7.16487 8.77326 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023791 B = 0.004194 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.627192 B = 6675.057619 C = 7334.549549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.954 3.046 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.547 4.547 8 H 0.029 0.971 9 C 0.185 3.815 10 O -0.403 6.403 11 C 0.080 3.920 12 H 0.060 0.940 13 C -0.141 4.141 14 C -0.107 4.107 15 C 0.051 3.949 16 N -0.524 5.524 17 C 0.095 3.905 18 C -0.130 4.130 19 C -0.114 4.114 20 C -0.129 4.129 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.125 4.125 24 C 0.073 3.927 25 H 0.274 0.726 26 H 0.010 0.990 27 H 0.009 0.991 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.095 -13.074 0.334 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.170 1.170 7 C -0.585 4.585 8 H 0.047 0.953 9 C 0.109 3.891 10 O -0.322 6.322 11 C 0.022 3.978 12 H 0.078 0.922 13 C -0.179 4.179 14 C -0.144 4.144 15 C -0.076 4.076 16 N -0.247 5.247 17 C -0.032 4.032 18 C -0.132 4.132 19 C -0.132 4.132 20 C -0.147 4.147 21 C -0.148 4.148 22 C -0.155 4.155 23 C -0.144 4.144 24 C -0.056 4.056 25 H 0.083 0.917 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.133 0.867 41 H 0.088 0.912 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 22.006 -12.669 0.119 25.392 hybrid contribution -1.072 0.027 0.279 1.108 sum 20.934 -12.642 0.397 24.458 Atomic orbital electron populations 1.70026 1.08229 1.28854 1.50912 1.25816 0.95786 1.03329 0.93310 0.85636 0.79439 0.77549 0.79931 1.18228 1.19550 1.17039 1.21151 0.90873 0.93871 1.52621 0.95261 1.20311 0.93221 0.80739 0.94821 1.87857 1.20898 1.28545 1.94918 1.22165 0.81211 0.98345 0.96120 0.92202 1.22069 0.97845 1.01591 0.96379 1.21542 0.93018 0.98572 1.01291 1.22264 1.01119 0.96772 0.87450 1.62265 1.08855 1.39870 1.13732 1.21347 1.00867 0.83567 0.97403 1.20783 0.95848 0.98164 0.98357 1.21329 1.00561 0.94943 0.96374 1.21483 0.95807 0.97077 1.00321 1.21457 0.95933 1.00487 0.96900 1.21407 1.00462 0.95677 0.97980 1.21280 0.95839 0.96797 1.00460 1.21835 0.88417 0.95361 0.99950 0.91702 0.97196 0.97306 0.92923 0.92583 0.89168 0.90688 0.94844 0.87818 0.89700 0.87248 0.84136 0.83890 0.84479 0.85543 0.86738 0.91198 0.94971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.97 13.96 21.45 0.30 -59.67 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.95 44.05 27.47 68.60 1.88 45.93 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.25 -10.59 6.54 99.48 0.65 -9.94 16 7 C -0.55 -34.23 9.99 25.60 0.26 -33.97 16 8 H 0.03 2.06 8.06 -2.91 -0.02 2.03 16 9 C 0.18 9.63 4.57 71.24 0.33 9.96 16 10 O -0.40 -19.75 9.98 -148.98 -1.49 -21.24 16 11 C 0.08 2.95 2.77 30.64 0.08 3.03 16 12 H 0.06 2.18 7.79 -2.38 -0.02 2.16 16 13 C -0.14 -4.48 5.62 30.67 0.17 -4.31 16 14 C -0.11 -2.39 6.09 30.65 0.19 -2.20 16 15 C 0.05 1.05 4.84 86.32 0.42 1.46 16 16 N -0.52 -12.42 4.86 -900.93 -4.38 -16.80 16 17 C 0.10 1.82 5.56 85.56 0.48 2.29 16 18 C -0.13 -2.73 4.03 -19.87 -0.08 -2.81 16 19 C -0.11 -2.05 8.13 22.27 0.18 -1.87 16 20 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 21 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 22 C -0.14 -3.10 10.05 22.27 0.22 -2.88 16 23 C -0.12 -3.00 8.02 22.27 0.18 -2.82 16 24 C 0.07 2.28 4.19 86.33 0.36 2.65 16 25 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.01 0.52 6.99 -2.39 -0.02 0.50 16 27 H 0.01 0.46 7.51 -2.39 -0.02 0.44 16 28 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.87 7.94 -2.39 -0.02 1.85 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 0.74 6.56 -2.39 -0.02 0.73 16 33 H 0.10 1.51 8.06 -2.38 -0.02 1.49 16 34 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 35 H 0.11 1.54 8.00 -2.39 -0.02 1.52 16 36 H 0.14 1.85 8.05 -2.91 -0.02 1.83 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 39 H 0.13 2.58 8.06 -2.91 -0.02 2.55 16 40 H 0.11 2.80 8.02 -2.91 -0.02 2.77 16 41 H 0.07 2.27 8.12 -2.39 -0.02 2.25 16 42 H 0.03 1.10 6.47 -2.38 -0.02 1.09 16 Total: -1.00 -72.07 333.01 0.93 -71.14 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.91 Total: 15.05 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 3.69 Total: -34.42 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -4.08 Total: -76.47 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -1.49 Total: -21.24 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -72.07 0.93 -71.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.756 kcal (2) G-P(sol) polarization free energy of solvation -72.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds