Wall clock time and date at job start Mon Mar 30 2020 01:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48505 * 109.46905 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.46747 * 29.99313 * 3 2 1 6 6 H 1.48499 * 109.47303 * 149.99706 * 3 2 1 7 7 C 1.37881 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00061 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00004 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.42895 * 113.99839 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.53573 * 29.90779 * 11 10 9 13 13 C 1.53119 * 109.50659 * 269.79998 * 11 10 9 14 14 C 1.53120 * 109.16202 * 182.40463 * 13 11 10 15 15 C 1.53041 * 109.27703 * 57.65829 * 14 13 11 16 16 N 1.46847 * 109.51486 * 300.81824 * 15 14 13 17 17 C 1.46899 * 110.99299 * 185.84807 * 16 15 14 18 18 C 1.50705 * 109.46990 * 45.79343 * 17 16 15 19 19 C 1.38238 * 119.99920 * 269.72939 * 18 17 16 20 20 C 1.38240 * 119.99920 * 179.78975 * 19 18 17 21 21 C 1.38243 * 119.99564 * 0.43664 * 20 19 18 22 22 C 1.38231 * 120.00355 * 359.81481 * 21 20 19 23 23 C 1.38238 * 119.99960 * 90.00274 * 18 17 16 24 24 C 1.46847 * 111.20163 * 61.75514 * 16 15 14 25 25 H 0.96995 * 119.99921 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47115 * 59.99779 * 9 7 2 27 27 H 1.08997 * 109.46800 * 299.99858 * 9 7 2 28 28 H 1.08993 * 109.52284 * 302.31728 * 13 11 10 29 29 H 1.09003 * 109.51690 * 62.44148 * 13 11 10 30 30 H 1.08996 * 109.50328 * 177.59853 * 14 13 11 31 31 H 1.09004 * 109.50202 * 297.68149 * 14 13 11 32 32 H 1.09005 * 109.45785 * 60.83329 * 15 14 13 33 33 H 1.08995 * 109.46178 * 180.81412 * 15 14 13 34 34 H 1.09002 * 109.47485 * 165.78779 * 17 16 15 35 35 H 1.08997 * 109.47251 * 285.79717 * 17 16 15 36 36 H 1.07997 * 120.00111 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.00170 * 180.27653 * 20 19 18 38 38 H 1.07997 * 119.99231 * 179.83957 * 21 20 19 39 39 H 1.07999 * 120.00121 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99969 * 359.97438 * 23 18 17 41 41 H 1.09002 * 109.46448 * 178.23132 * 24 16 15 42 42 H 1.08994 * 109.45958 * 58.25497 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 8 3.9879 -2.5414 0.0022 11 6 5.4124 -2.6542 0.0022 12 1 5.8461 -1.7949 0.5137 13 6 5.9217 -2.7007 -1.4410 14 6 7.4421 -2.8820 -1.4319 15 6 7.7939 -4.1605 -0.6680 16 7 7.2860 -4.0662 0.7066 17 6 7.7247 -5.2153 1.5098 18 6 9.1924 -5.4624 1.2732 19 6 9.5956 -6.3158 0.2632 20 6 10.9421 -6.5391 0.0435 21 6 11.8849 -5.9160 0.8396 22 6 11.4816 -5.0667 1.8529 23 6 10.1352 -4.8401 2.0699 24 6 5.8231 -3.9394 0.7246 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6805 -0.8888 28 1 5.4582 -3.5372 -1.9640 29 1 5.6680 -1.7691 -1.9469 30 1 7.8055 -2.9586 -2.4566 31 1 7.9077 -2.0258 -0.9436 32 1 7.3393 -5.0174 -1.1653 33 1 8.8766 -4.2849 -0.6473 34 1 7.5573 -5.0053 2.5662 35 1 7.1562 -6.0991 1.2204 36 1 8.8589 -6.8057 -0.3561 37 1 11.2572 -7.2023 -0.7484 38 1 12.9367 -6.0925 0.6695 39 1 12.2182 -4.5802 2.4751 40 1 9.8201 -4.1765 2.8616 41 1 5.4743 -3.9032 1.7567 42 1 5.3780 -4.7973 0.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260004586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:39 Heat of formation + Delta-G solvation = -22.373265 kcal Electronic energy + Delta-G solvation = -20962.029674 eV Core-core repulsion = 17906.585728 eV Total energy + Delta-G solvation = -3055.443946 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00900 -38.62225 -36.46619 -33.60952 -32.56663 -31.21743 -31.10421 -29.71023 -27.56954 -26.43546 -23.15150 -22.94070 -22.50862 -21.78429 -20.89750 -19.60542 -17.08908 -16.80745 -16.17396 -15.69196 -15.49119 -15.33702 -14.59371 -14.50777 -14.30917 -13.98171 -13.73436 -13.58256 -13.15072 -12.82906 -12.67205 -12.48491 -12.39140 -12.18421 -11.99453 -11.23599 -11.18359 -11.05875 -10.94078 -10.83788 -10.62399 -10.42818 -10.10113 -9.83173 -9.17347 -9.11103 -9.00780 -8.82422 -8.44831 -8.26623 -6.11699 -4.10738 1.10077 1.19471 3.25186 3.32210 3.34407 3.45879 3.94489 4.35842 4.50277 4.63289 4.77442 4.79262 4.91490 4.96784 5.10576 5.12439 5.18812 5.20931 5.28829 5.45254 5.48485 5.49524 5.61766 5.71049 5.79588 5.82414 5.86899 5.88901 6.02193 6.12640 6.15574 6.24121 6.29437 6.40047 6.42659 6.55548 6.66870 6.77357 7.01589 7.05083 7.08108 7.60212 8.04071 8.66770 8.99472 9.47649 11.01328 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038871 B = 0.003245 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.159072 B = 8626.785279 C = 8664.665896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.082 0.918 9 C 0.171 3.829 10 O -0.376 6.376 11 C 0.091 3.909 12 H 0.060 0.940 13 C -0.143 4.143 14 C -0.114 4.114 15 C 0.051 3.949 16 N -0.530 5.530 17 C 0.093 3.907 18 C -0.078 4.078 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.099 4.099 24 C 0.062 3.938 25 H 0.266 0.734 26 H 0.004 0.996 27 H -0.002 1.002 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.081 0.919 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.978 -11.188 1.115 26.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.557 4.557 8 H 0.100 0.900 9 C 0.096 3.904 10 O -0.294 6.294 11 C 0.032 3.968 12 H 0.078 0.922 13 C -0.181 4.181 14 C -0.152 4.152 15 C -0.076 4.076 16 N -0.256 5.256 17 C -0.034 4.034 18 C -0.079 4.079 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.141 4.141 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.066 4.066 25 H 0.076 0.924 26 H 0.021 0.979 27 H 0.016 0.984 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.100 0.900 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 23.836 -10.792 1.328 26.198 hybrid contribution 0.176 0.453 -0.460 0.669 sum 24.012 -10.339 0.868 26.158 Atomic orbital electron populations 1.69875 1.06062 1.27097 1.50367 1.24766 0.94803 0.98760 0.94623 0.86859 0.80425 0.83751 0.78804 1.19922 1.20759 1.18998 1.20899 0.88292 0.95303 1.51222 0.89994 1.20631 0.96030 0.79377 0.94340 1.87899 1.17150 1.29751 1.94612 1.21794 0.84108 0.96875 0.94046 0.92212 1.22112 0.94907 1.02708 0.98397 1.21543 0.96238 0.97933 0.99437 1.22245 1.00250 0.97134 0.88018 1.61964 1.11013 1.40337 1.12248 1.21085 0.90855 0.92270 0.99190 1.19805 0.95289 0.96849 0.95917 1.21113 0.96085 0.98464 0.97579 1.21110 0.93029 1.00189 0.99743 1.21146 0.99404 0.97586 0.96005 1.21167 0.95951 0.98664 0.98218 1.21080 0.92566 0.98699 0.99419 1.22044 0.85675 0.97474 1.01384 0.92361 0.97863 0.98394 0.91618 0.91509 0.91585 0.91269 0.95039 0.90260 0.89612 0.93793 0.86318 0.86191 0.86300 0.86122 0.85748 0.90042 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -15.55 9.99 -34.44 -0.34 -15.90 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.17 4.40 4.57 36.01 0.16 4.57 16 10 O -0.38 -8.83 9.97 -35.23 -0.35 -9.18 16 11 C 0.09 1.66 2.77 -26.65 -0.07 1.59 16 12 H 0.06 1.11 7.79 -51.93 -0.40 0.71 16 13 C -0.14 -2.30 5.62 -26.61 -0.15 -2.45 16 14 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 15 C 0.05 0.63 4.58 -3.83 -0.02 0.61 16 16 N -0.53 -6.94 4.80 -236.11 -1.13 -8.07 16 17 C 0.09 1.02 5.43 -4.97 -0.03 0.99 16 18 C -0.08 -0.80 4.11 -104.62 -0.43 -1.23 16 19 C -0.11 -1.07 7.81 -39.58 -0.31 -1.38 16 20 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 23 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 24 C 0.06 0.96 5.08 -3.83 -0.02 0.94 16 25 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.00 0.09 7.14 -51.93 -0.37 -0.28 16 27 H 0.00 -0.04 7.38 -51.93 -0.38 -0.42 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.92 5.65 -51.93 -0.29 0.63 16 34 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.04 0.47 8.02 -51.93 -0.42 0.05 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.08 1.26 8.12 -51.93 -0.42 0.84 16 42 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -31.74 335.84 -10.30 -42.05 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.94 Total: -2.27 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.04 Total: -17.47 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.36 Total: -35.08 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.35 Total: -9.18 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.74 -10.30 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.673 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds