Wall clock time and date at job start Mon Mar 30 2020 01:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00269 * 2 1 4 4 H 1.48505 * 109.46905 * 270.00109 * 3 2 1 5 5 H 1.48498 * 109.46747 * 29.99313 * 3 2 1 6 6 H 1.48499 * 109.47303 * 149.99706 * 3 2 1 7 7 C 1.37881 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00061 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00004 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47176 * 179.97438 * 9 7 2 11 11 C 1.42895 * 113.99839 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.53573 * 29.90779 * 11 10 9 13 13 C 1.53119 * 109.50659 * 269.79998 * 11 10 9 14 14 C 1.53120 * 109.16202 * 182.40463 * 13 11 10 15 15 C 1.53041 * 109.27703 * 57.65829 * 14 13 11 16 16 N 1.46847 * 109.51486 * 300.81824 * 15 14 13 17 17 C 1.46899 * 110.99299 * 185.84807 * 16 15 14 18 18 C 1.50705 * 109.46990 * 45.79343 * 17 16 15 19 19 C 1.38238 * 119.99920 * 269.72939 * 18 17 16 20 20 C 1.38240 * 119.99920 * 179.78975 * 19 18 17 21 21 C 1.38243 * 119.99564 * 0.43664 * 20 19 18 22 22 C 1.38231 * 120.00355 * 359.81481 * 21 20 19 23 23 C 1.38238 * 119.99960 * 90.00274 * 18 17 16 24 24 C 1.46847 * 111.20163 * 61.75514 * 16 15 14 25 25 H 0.96995 * 119.99921 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47115 * 59.99779 * 9 7 2 27 27 H 1.08997 * 109.46800 * 299.99858 * 9 7 2 28 28 H 1.08993 * 109.52284 * 302.31728 * 13 11 10 29 29 H 1.09003 * 109.51690 * 62.44148 * 13 11 10 30 30 H 1.08996 * 109.50328 * 177.59853 * 14 13 11 31 31 H 1.09004 * 109.50202 * 297.68149 * 14 13 11 32 32 H 1.09005 * 109.45785 * 60.83329 * 15 14 13 33 33 H 1.08995 * 109.46178 * 180.81412 * 15 14 13 34 34 H 1.09002 * 109.47485 * 165.78779 * 17 16 15 35 35 H 1.08997 * 109.47251 * 285.79717 * 17 16 15 36 36 H 1.07997 * 120.00111 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.00170 * 180.27653 * 20 19 18 38 38 H 1.07997 * 119.99231 * 179.83957 * 21 20 19 39 39 H 1.07999 * 120.00121 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99969 * 359.97438 * 23 18 17 41 41 H 1.09002 * 109.46448 * 178.23132 * 24 16 15 42 42 H 1.08994 * 109.45958 * 58.25497 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 8 3.9879 -2.5414 0.0022 11 6 5.4124 -2.6542 0.0022 12 1 5.8461 -1.7949 0.5137 13 6 5.9217 -2.7007 -1.4410 14 6 7.4421 -2.8820 -1.4319 15 6 7.7939 -4.1605 -0.6680 16 7 7.2860 -4.0662 0.7066 17 6 7.7247 -5.2153 1.5098 18 6 9.1924 -5.4624 1.2732 19 6 9.5956 -6.3158 0.2632 20 6 10.9421 -6.5391 0.0435 21 6 11.8849 -5.9160 0.8396 22 6 11.4816 -5.0667 1.8529 23 6 10.1352 -4.8401 2.0699 24 6 5.8231 -3.9394 0.7246 25 1 -0.4850 0.8400 -0.0004 26 1 3.8746 -0.6800 0.8911 27 1 3.8752 -0.6805 -0.8888 28 1 5.4582 -3.5372 -1.9640 29 1 5.6680 -1.7691 -1.9469 30 1 7.8055 -2.9586 -2.4566 31 1 7.9077 -2.0258 -0.9436 32 1 7.3393 -5.0174 -1.1653 33 1 8.8766 -4.2849 -0.6473 34 1 7.5573 -5.0053 2.5662 35 1 7.1562 -6.0991 1.2204 36 1 8.8589 -6.8057 -0.3561 37 1 11.2572 -7.2023 -0.7484 38 1 12.9367 -6.0925 0.6695 39 1 12.2182 -4.5802 2.4751 40 1 9.8201 -4.1765 2.8616 41 1 5.4743 -3.9032 1.7567 42 1 5.3780 -4.7973 0.2207 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260004586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:38 Heat of formation + Delta-G solvation = -42.073104 kcal Electronic energy + Delta-G solvation = -20962.883924 eV Core-core repulsion = 17906.585728 eV Total energy + Delta-G solvation = -3056.298195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91438 -39.72041 -37.95018 -35.04322 -34.43767 -32.14208 -31.77522 -31.13953 -29.48925 -27.35607 -24.44004 -23.99976 -23.64036 -23.28164 -21.78546 -20.81274 -19.08735 -17.77504 -17.47759 -17.04862 -16.41633 -16.31584 -16.18446 -16.02163 -15.42965 -15.14282 -14.95751 -14.71748 -14.28925 -14.22246 -13.93121 -13.63263 -13.58143 -13.39952 -12.99360 -12.94661 -12.77525 -12.15744 -11.99947 -11.92432 -11.85212 -11.77910 -11.74703 -11.44099 -11.30497 -10.92965 -10.29297 -9.76624 -9.72338 -9.27768 -8.39452 -6.47565 0.42401 0.54235 1.31949 1.34818 1.46038 2.27659 2.52057 2.92960 2.98412 3.38265 3.73118 3.79594 3.89683 3.98783 4.02143 4.19662 4.22144 4.29476 4.37766 4.39221 4.48945 4.57019 4.59251 4.65061 4.70733 4.71649 4.82910 4.87651 4.93524 4.97779 5.01618 5.12933 5.20055 5.20733 5.33313 5.42324 5.59115 5.66386 5.73073 5.87649 6.00841 6.07041 6.15208 6.56257 6.72651 7.16911 8.77644 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.038871 B = 0.003245 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.159072 B = 8626.785279 C = 8664.665896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.247 1.247 7 C -0.547 4.547 8 H 0.031 0.969 9 C 0.185 3.815 10 O -0.401 6.401 11 C 0.082 3.918 12 H 0.059 0.941 13 C -0.140 4.140 14 C -0.106 4.106 15 C 0.054 3.946 16 N -0.532 5.532 17 C 0.094 3.906 18 C -0.092 4.092 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.112 4.112 24 C 0.071 3.929 25 H 0.274 0.726 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.077 0.923 42 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.292 -10.477 0.776 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.171 1.171 7 C -0.584 4.584 8 H 0.049 0.951 9 C 0.109 3.891 10 O -0.320 6.320 11 C 0.024 3.976 12 H 0.077 0.923 13 C -0.178 4.178 14 C -0.144 4.144 15 C -0.073 4.073 16 N -0.258 5.258 17 C -0.032 4.032 18 C -0.092 4.092 19 C -0.141 4.141 20 C -0.145 4.145 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.131 4.131 24 C -0.057 4.057 25 H 0.083 0.917 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.144 0.856 41 H 0.095 0.905 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 27.169 -10.110 0.991 29.006 hybrid contribution -0.857 0.093 -0.341 0.927 sum 26.311 -10.017 0.650 28.161 Atomic orbital electron populations 1.70025 1.08204 1.28837 1.50932 1.25825 0.95805 1.03353 0.93390 0.85633 0.79438 0.77584 0.79879 1.18271 1.19611 1.17063 1.21154 0.90857 0.93894 1.52523 0.95106 1.20314 0.93214 0.80725 0.94848 1.87849 1.20733 1.28540 1.94915 1.22111 0.81233 0.98213 0.96067 0.92332 1.22068 0.97272 1.02030 0.96433 1.21528 0.93511 0.98296 1.01043 1.22256 1.00876 0.96801 0.87359 1.61959 1.08972 1.41748 1.13133 1.21095 0.91773 0.91439 0.98912 1.19754 0.94564 0.97963 0.96910 1.21235 0.96861 0.98484 0.97529 1.21395 0.92634 1.00251 1.00190 1.21483 1.00627 0.96813 0.95379 1.21435 0.95835 0.98705 0.98568 1.21220 0.93204 0.99011 0.99624 1.21863 0.87506 0.95772 1.00579 0.91717 0.97229 0.97262 0.92214 0.92368 0.89278 0.91208 0.94842 0.89020 0.89390 0.93681 0.85948 0.84272 0.84061 0.84352 0.85630 0.90502 0.94644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 2 C 0.01 0.87 5.47 84.66 0.46 1.33 16 3 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 7 C -0.55 -33.89 9.99 25.60 0.26 -33.64 16 8 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 9 C 0.18 9.53 4.57 71.24 0.33 9.86 16 10 O -0.40 -19.29 9.97 -148.98 -1.49 -20.77 16 11 C 0.08 2.98 2.77 30.65 0.08 3.07 16 12 H 0.06 2.14 7.79 -2.39 -0.02 2.12 16 13 C -0.14 -4.38 5.62 30.67 0.17 -4.21 16 14 C -0.11 -2.51 6.09 30.65 0.19 -2.33 16 15 C 0.05 1.23 4.58 86.33 0.40 1.62 16 16 N -0.53 -13.37 4.80 -900.91 -4.32 -17.69 16 17 C 0.09 1.99 5.43 85.56 0.46 2.45 16 18 C -0.09 -1.73 4.11 -19.86 -0.08 -1.81 16 19 C -0.12 -2.07 7.81 22.27 0.17 -1.89 16 20 C -0.13 -1.80 10.05 22.27 0.22 -1.58 16 21 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 22 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 23 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 24 C 0.07 2.19 5.08 86.33 0.44 2.62 16 25 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 26 H 0.01 0.50 7.14 -2.39 -0.02 0.48 16 27 H 0.01 0.47 7.38 -2.39 -0.02 0.45 16 28 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 30 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.03 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.09 1.90 5.65 -2.39 -0.01 1.89 16 34 H 0.09 1.77 8.09 -2.39 -0.02 1.76 16 35 H 0.04 0.93 8.02 -2.39 -0.02 0.91 16 36 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 38 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 41 H 0.08 2.40 8.12 -2.39 -0.02 2.38 16 42 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -70.09 335.84 1.05 -69.04 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.91 Total: 12.42 kcal Atomic # 6 Polarization: -33.15 SS G_CDS: 3.77 Total: -29.38 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -4.02 Total: -77.12 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.49 Total: -20.77 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -70.09 1.05 -69.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260004586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.962 kcal (2) G-P(sol) polarization free energy of solvation -70.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds