Wall clock time and date at job start Mon Mar 30 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47150 * 269.99841 * 3 2 1 5 5 H 1.48496 * 109.47425 * 29.99722 * 3 2 1 6 6 H 1.48503 * 109.47107 * 150.00223 * 3 2 1 7 7 C 1.37883 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99938 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53126 * 109.52064 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27785 * 177.62451 * 10 9 7 12 12 N 1.46849 * 109.52113 * 300.82264 * 11 10 9 13 13 C 1.46905 * 110.99664 * 185.83957 * 12 11 10 14 14 C 1.53000 * 109.47172 * 75.80542 * 13 12 11 15 15 O 1.42903 * 109.47362 * 65.01886 * 14 13 12 16 16 C 1.35899 * 116.99971 * 180.02562 * 15 14 13 17 17 C 1.38726 * 120.05698 * 359.72149 * 16 15 14 18 18 C 1.38146 * 119.94199 * 179.74453 * 17 16 15 19 19 C 1.38266 * 120.05962 * 0.51228 * 18 17 16 20 20 C 1.38265 * 120.10648 * 359.76316 * 19 18 17 21 21 C 1.38142 * 120.05857 * 359.97438 * 20 19 18 22 22 C 1.46844 * 111.20087 * 61.74387 * 12 11 10 23 23 C 1.53037 * 109.52235 * 298.25802 * 22 12 11 24 24 H 0.96997 * 120.00162 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52368 * 59.87695 * 9 7 2 26 26 H 1.08995 * 109.50214 * 57.68170 * 10 9 7 27 27 H 1.08997 * 109.53502 * 297.58153 * 10 9 7 28 28 H 1.08995 * 109.46292 * 180.80629 * 11 10 9 29 29 H 1.08996 * 109.45440 * 60.83427 * 11 10 9 30 30 H 1.08995 * 109.47048 * 315.80365 * 13 12 11 31 31 H 1.09004 * 109.46925 * 195.80246 * 13 12 11 32 32 H 1.09003 * 109.47344 * 185.01702 * 14 13 12 33 33 H 1.09004 * 109.46869 * 305.02019 * 14 13 12 34 34 H 1.08000 * 120.03183 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.97510 * 180.28052 * 18 17 16 36 36 H 1.08001 * 119.94888 * 179.74852 * 19 18 17 37 37 H 1.08003 * 119.97019 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.03151 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46077 * 58.27441 * 22 12 11 40 40 H 1.08998 * 109.46144 * 178.24191 * 22 12 11 41 41 H 1.09006 * 109.50047 * 299.23638 * 23 22 12 42 42 H 1.08993 * 109.50440 * 179.12232 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0231 -2.6374 0.0014 11 6 5.5523 -2.6313 -0.0591 12 7 5.9925 -1.9381 -1.2765 13 6 7.4495 -2.0332 -1.4388 14 6 7.8179 -3.4358 -1.9263 15 8 7.2781 -3.6430 -3.2332 16 6 7.5156 -4.8480 -3.8149 17 6 8.2579 -5.8091 -3.1442 18 6 8.4934 -7.0351 -3.7356 19 6 7.9991 -7.3010 -4.9992 20 6 7.2638 -6.3426 -5.6720 21 6 7.0209 -5.1170 -5.0828 22 6 5.5531 -0.5369 -1.2781 23 6 4.0240 -0.4804 -1.2539 24 1 -0.4850 0.8400 0.0004 25 1 3.8760 -0.6779 0.8880 26 1 3.6267 -3.1648 -0.8662 27 1 3.6970 -3.1388 0.9125 28 1 5.9192 -3.6576 -0.0727 29 1 5.9481 -2.1157 0.8158 30 1 7.9348 -1.8420 -0.4817 31 1 7.7826 -1.2955 -2.1689 32 1 8.9028 -3.5350 -1.9615 33 1 7.4072 -4.1780 -1.2417 34 1 8.6482 -5.6004 -2.1590 35 1 9.0674 -7.7854 -3.2120 36 1 8.1877 -8.2586 -5.4615 37 1 6.8790 -6.5525 -6.6591 38 1 6.4468 -4.3686 -5.6090 39 1 5.9492 -0.0312 -0.3975 40 1 5.9207 -0.0421 -2.1770 41 1 3.6276 -0.9740 -2.1413 42 1 3.6985 0.5597 -1.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:51 Heat of formation + Delta-G solvation = -9.793306 kcal Electronic energy + Delta-G solvation = -21141.205095 eV Core-core repulsion = 18086.306657 eV Total energy + Delta-G solvation = -3054.898438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13211 -38.59520 -37.28638 -34.22852 -31.92735 -31.12250 -30.31914 -30.07841 -28.77932 -25.65435 -23.44178 -22.66218 -22.40903 -21.62019 -20.74138 -18.86533 -18.29753 -16.71337 -16.34299 -16.16989 -15.78090 -15.13846 -14.68437 -14.48373 -14.14805 -13.92246 -13.52412 -13.26949 -13.22564 -12.82487 -12.62669 -12.45111 -12.24861 -11.83705 -11.67100 -11.43896 -11.35990 -10.95930 -10.76484 -10.74602 -10.53165 -10.05510 -9.87269 -9.60084 -9.10898 -9.03147 -8.90088 -8.48401 -8.22669 -7.94211 -6.02758 -4.00836 1.23690 1.38313 3.21458 3.29338 3.38619 3.41136 3.71071 4.12910 4.44483 4.68497 4.77050 4.92870 4.99147 5.03158 5.18753 5.27305 5.28454 5.33962 5.42575 5.52206 5.59429 5.65567 5.73244 5.87727 5.89753 5.91112 6.13356 6.18342 6.24080 6.30699 6.38229 6.42506 6.45987 6.69544 6.76989 6.86378 6.96503 7.25935 7.37911 7.48553 7.53522 7.67795 7.83146 8.58456 9.02111 9.60264 11.10894 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.003743 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.849782 B = 7477.933968 C = 7769.805692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.299 1.299 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.073 0.927 9 C 0.014 3.986 10 C -0.096 4.096 11 C 0.054 3.946 12 N -0.527 5.527 13 C 0.053 3.947 14 C 0.068 3.932 15 O -0.293 6.293 16 C 0.139 3.861 17 C -0.215 4.215 18 C -0.082 4.082 19 C -0.168 4.168 20 C -0.081 4.081 21 C -0.154 4.154 22 C 0.058 3.942 23 C -0.116 4.116 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.026 0.974 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.024 0.976 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.786 -9.883 -6.657 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.073 4.073 12 N -0.252 5.252 13 C -0.076 4.076 14 C -0.008 4.008 15 O -0.206 6.206 16 C 0.092 3.908 17 C -0.234 4.234 18 C -0.100 4.100 19 C -0.186 4.186 20 C -0.099 4.099 21 C -0.173 4.173 22 C -0.070 4.070 23 C -0.154 4.154 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.042 0.958 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.291 -9.819 -7.109 22.784 hybrid contribution 0.879 1.238 0.856 1.743 sum 20.170 -8.581 -6.253 22.794 Atomic orbital electron populations 1.69902 1.06276 1.26807 1.51221 1.25031 0.94676 0.99004 0.94628 0.86840 0.79772 0.83687 0.77878 1.20539 1.22635 1.19286 1.21069 0.88884 0.94405 1.50346 0.90889 1.19176 0.96638 0.91951 0.92759 1.21480 0.91241 0.99346 1.01273 1.22256 0.98454 0.97255 0.89348 1.61876 1.09663 1.15164 1.38505 1.22124 0.90177 0.95429 0.99822 1.22880 0.96795 0.98461 0.82633 1.86228 1.72423 1.30521 1.31381 1.19141 0.93738 0.85234 0.92653 1.21266 1.05087 0.95402 1.01626 1.20917 0.98168 0.95878 0.95042 1.21011 1.01791 0.99910 0.95899 1.20965 0.96946 0.92513 0.99508 1.20508 1.04173 0.98569 0.94016 1.22194 0.98377 0.87203 0.99196 1.22011 0.91367 0.99902 1.02086 0.92768 0.96131 0.91755 0.92442 0.92097 0.95593 0.92823 0.90059 0.92199 0.91861 0.85728 0.86127 0.86217 0.85565 0.85118 0.95770 0.91842 0.91158 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 3 Si 0.89 22.24 24.37 -169.99 -4.14 18.09 16 4 H -0.28 -6.79 6.89 56.52 0.39 -6.40 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 6 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 7 C -0.51 -14.49 9.15 -34.44 -0.31 -14.80 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C 0.01 0.32 1.75 -91.65 -0.16 0.16 16 10 C -0.10 -1.94 5.32 -26.65 -0.14 -2.09 16 11 C 0.05 0.91 5.29 -3.83 -0.02 0.89 16 12 N -0.53 -8.74 4.53 -234.67 -1.06 -9.80 16 13 C 0.05 0.67 5.39 -3.82 -0.02 0.65 16 14 C 0.07 0.80 4.93 37.16 0.18 0.98 16 15 O -0.29 -4.20 10.08 -19.42 -0.20 -4.39 16 16 C 0.14 1.81 6.69 -39.22 -0.26 1.55 16 17 C -0.22 -2.41 9.04 -39.43 -0.36 -2.76 16 18 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 19 C -0.17 -1.61 10.04 -39.56 -0.40 -2.01 16 20 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 21 C -0.15 -1.88 9.99 -39.43 -0.39 -2.28 16 22 C 0.06 1.04 5.43 -3.84 -0.02 1.02 16 23 C -0.12 -2.55 4.84 -26.65 -0.13 -2.68 16 24 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.02 0.50 7.19 -51.93 -0.37 0.13 16 26 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.60 8.00 -51.93 -0.42 0.18 16 31 H 0.08 0.99 7.79 -51.93 -0.40 0.59 16 32 H 0.06 0.55 7.65 -51.93 -0.40 0.16 16 33 H 0.06 0.73 6.23 -51.93 -0.32 0.41 16 34 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 38 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 41 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 42 H 0.05 1.10 3.39 -51.93 -0.18 0.92 16 LS Contribution 327.22 15.07 4.93 4.93 Total: -1.00 -31.70 327.22 -9.21 -40.90 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.58 Total: -0.52 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.93 Total: -21.92 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: -0.29 Total: -37.09 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.09 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.70 -9.21 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.109 kcal (2) G-P(sol) polarization free energy of solvation -31.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds