Wall clock time and date at job start Mon Mar 30 2020 01:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00042 * 2 1 4 4 H 1.48501 * 109.47150 * 269.99841 * 3 2 1 5 5 H 1.48496 * 109.47425 * 29.99722 * 3 2 1 6 6 H 1.48503 * 109.47107 * 150.00223 * 3 2 1 7 7 C 1.37883 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99938 * 0.02562 * 7 2 1 9 9 C 1.50694 * 119.99745 * 179.97438 * 7 2 1 10 10 C 1.53126 * 109.52064 * 179.97438 * 9 7 2 11 11 C 1.53036 * 109.27785 * 177.62451 * 10 9 7 12 12 N 1.46849 * 109.52113 * 300.82264 * 11 10 9 13 13 C 1.46905 * 110.99664 * 185.83957 * 12 11 10 14 14 C 1.53000 * 109.47172 * 75.80542 * 13 12 11 15 15 O 1.42903 * 109.47362 * 65.01886 * 14 13 12 16 16 C 1.35899 * 116.99971 * 180.02562 * 15 14 13 17 17 C 1.38726 * 120.05698 * 359.72149 * 16 15 14 18 18 C 1.38146 * 119.94199 * 179.74453 * 17 16 15 19 19 C 1.38266 * 120.05962 * 0.51228 * 18 17 16 20 20 C 1.38265 * 120.10648 * 359.76316 * 19 18 17 21 21 C 1.38142 * 120.05857 * 359.97438 * 20 19 18 22 22 C 1.46844 * 111.20087 * 61.74387 * 12 11 10 23 23 C 1.53037 * 109.52235 * 298.25802 * 22 12 11 24 24 H 0.96997 * 120.00162 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.52368 * 59.87695 * 9 7 2 26 26 H 1.08995 * 109.50214 * 57.68170 * 10 9 7 27 27 H 1.08997 * 109.53502 * 297.58153 * 10 9 7 28 28 H 1.08995 * 109.46292 * 180.80629 * 11 10 9 29 29 H 1.08996 * 109.45440 * 60.83427 * 11 10 9 30 30 H 1.08995 * 109.47048 * 315.80365 * 13 12 11 31 31 H 1.09004 * 109.46925 * 195.80246 * 13 12 11 32 32 H 1.09003 * 109.47344 * 185.01702 * 14 13 12 33 33 H 1.09004 * 109.46869 * 305.02019 * 14 13 12 34 34 H 1.08000 * 120.03183 * 359.97438 * 17 16 15 35 35 H 1.08001 * 119.97510 * 180.28052 * 18 17 16 36 36 H 1.08001 * 119.94888 * 179.74852 * 19 18 17 37 37 H 1.08003 * 119.97019 * 179.97438 * 20 19 18 38 38 H 1.08004 * 120.03151 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46077 * 58.27441 * 22 12 11 40 40 H 1.08998 * 109.46144 * 178.24191 * 22 12 11 41 41 H 1.09006 * 109.50047 * 299.23638 * 23 22 12 42 42 H 1.08993 * 109.50440 * 179.12232 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0231 -2.6374 0.0014 11 6 5.5523 -2.6313 -0.0591 12 7 5.9925 -1.9381 -1.2765 13 6 7.4495 -2.0332 -1.4388 14 6 7.8179 -3.4358 -1.9263 15 8 7.2781 -3.6430 -3.2332 16 6 7.5156 -4.8480 -3.8149 17 6 8.2579 -5.8091 -3.1442 18 6 8.4934 -7.0351 -3.7356 19 6 7.9991 -7.3010 -4.9992 20 6 7.2638 -6.3426 -5.6720 21 6 7.0209 -5.1170 -5.0828 22 6 5.5531 -0.5369 -1.2781 23 6 4.0240 -0.4804 -1.2539 24 1 -0.4850 0.8400 0.0004 25 1 3.8760 -0.6779 0.8880 26 1 3.6267 -3.1648 -0.8662 27 1 3.6970 -3.1388 0.9125 28 1 5.9192 -3.6576 -0.0727 29 1 5.9481 -2.1157 0.8158 30 1 7.9348 -1.8420 -0.4817 31 1 7.7826 -1.2955 -2.1689 32 1 8.9028 -3.5350 -1.9615 33 1 7.4072 -4.1780 -1.2417 34 1 8.6482 -5.6004 -2.1590 35 1 9.0674 -7.7854 -3.2120 36 1 8.1877 -8.2586 -5.4615 37 1 6.8790 -6.5525 -6.6591 38 1 6.4468 -4.3686 -5.6090 39 1 5.9492 -0.0312 -0.3975 40 1 5.9207 -0.0421 -2.1770 41 1 3.6276 -0.9740 -2.1413 42 1 3.6985 0.5597 -1.2394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:50 Heat of formation + Delta-G solvation = -30.090926 kcal Electronic energy + Delta-G solvation = -21142.085266 eV Core-core repulsion = 18086.306657 eV Total energy + Delta-G solvation = -3055.778609 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.00874 -39.93908 -38.21726 -35.88218 -33.86014 -31.98516 -31.76085 -31.14672 -29.88546 -27.36390 -24.70101 -23.99280 -23.30900 -23.02539 -21.84105 -20.49882 -19.17742 -18.83352 -17.55125 -17.02844 -16.70958 -16.56077 -15.83863 -15.73250 -15.47980 -15.16516 -14.84475 -14.79954 -14.40419 -14.26975 -13.87202 -13.71568 -13.54092 -13.29880 -12.92834 -12.66647 -12.46064 -12.38373 -12.15579 -12.02065 -11.81893 -11.62779 -11.56733 -11.40330 -10.98234 -10.78071 -10.61702 -9.89865 -9.17196 -9.06345 -8.30054 -6.33405 0.44790 0.57231 1.29531 1.33808 1.45072 2.32183 2.37052 2.90728 2.94354 3.05199 3.86446 3.98251 4.03246 4.05212 4.13824 4.26110 4.28038 4.30715 4.36601 4.43928 4.52574 4.55542 4.61568 4.64433 4.68935 4.79257 4.83300 4.84932 4.94058 4.96250 5.14057 5.17810 5.26216 5.44391 5.51145 5.53445 5.65210 5.66998 5.77787 5.94585 6.17475 6.26699 6.32659 6.61905 6.73616 7.31665 8.87381 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028804 B = 0.003743 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.849782 B = 7477.933968 C = 7769.805692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.007 3.993 3 Si 0.954 3.046 4 H -0.267 1.267 5 H -0.299 1.299 6 H -0.244 1.244 7 C -0.519 4.519 8 H 0.028 0.972 9 C 0.014 3.986 10 C -0.093 4.093 11 C 0.065 3.935 12 N -0.546 5.546 13 C 0.054 3.946 14 C 0.066 3.934 15 O -0.321 6.321 16 C 0.113 3.887 17 C -0.222 4.222 18 C -0.086 4.086 19 C -0.170 4.170 20 C -0.086 4.086 21 C -0.180 4.180 22 C 0.066 3.934 23 C -0.114 4.114 24 H 0.265 0.735 25 H 0.021 0.979 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.122 0.878 39 H 0.036 0.964 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.481 -10.115 -6.625 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.226 1.226 6 H -0.168 1.168 7 C -0.557 4.557 8 H 0.046 0.954 9 C -0.005 4.005 10 C -0.131 4.131 11 C -0.063 4.063 12 N -0.271 5.271 13 C -0.073 4.073 14 C -0.009 4.009 15 O -0.234 6.234 16 C 0.067 3.933 17 C -0.240 4.240 18 C -0.104 4.104 19 C -0.188 4.188 20 C -0.104 4.104 21 C -0.199 4.199 22 C -0.062 4.062 23 C -0.152 4.152 24 H 0.074 0.926 25 H 0.039 0.961 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.102 0.898 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.164 0.836 37 H 0.165 0.835 38 H 0.140 0.860 39 H 0.054 0.946 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 23.018 -10.075 -7.081 26.105 hybrid contribution -0.339 1.147 0.810 1.445 sum 22.679 -8.927 -6.271 25.167 Atomic orbital electron populations 1.70064 1.08312 1.27982 1.53060 1.25954 0.95481 1.03235 0.94253 0.85759 0.79115 0.78367 0.78692 1.19260 1.22650 1.16830 1.21430 0.91829 0.92771 1.49653 0.95377 1.19135 0.93261 0.94482 0.93655 1.21381 0.94615 0.96852 1.00242 1.22113 0.95026 0.99012 0.90137 1.61790 1.12670 1.14203 1.38446 1.22239 0.87447 0.96345 1.01303 1.23000 0.98369 0.97766 0.81742 1.86178 1.73346 1.31394 1.32523 1.19393 0.95088 0.85553 0.93236 1.21499 1.04755 0.95498 1.02267 1.21317 0.97843 0.95949 0.95246 1.21402 1.00771 1.00699 0.95888 1.21271 0.96754 0.91881 1.00444 1.20698 1.05134 0.99537 0.94495 1.22046 0.94869 0.88586 1.00701 1.21859 0.94906 0.98550 0.99867 0.92626 0.96054 0.93949 0.92611 0.89790 0.94255 0.90295 0.89442 0.89423 0.91852 0.84220 0.83454 0.83607 0.83537 0.85974 0.94571 0.89986 0.93296 0.94303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.48 13.96 21.45 0.30 -61.18 16 2 C 0.01 0.42 5.45 84.66 0.46 0.89 16 3 Si 0.95 46.01 24.37 68.60 1.67 47.68 16 4 H -0.27 -12.27 6.89 99.48 0.69 -11.58 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 6 H -0.24 -10.79 6.53 99.48 0.65 -10.14 16 7 C -0.52 -30.72 9.15 25.60 0.23 -30.49 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 9 C 0.01 0.64 1.75 -11.46 -0.02 0.62 16 10 C -0.09 -3.79 5.32 30.65 0.16 -3.62 16 11 C 0.06 2.00 5.29 86.33 0.46 2.45 16 12 N -0.55 -16.71 4.53 -896.37 -4.06 -20.77 16 13 C 0.05 1.18 5.39 86.30 0.47 1.65 16 14 C 0.07 1.36 4.93 71.98 0.36 1.72 16 15 O -0.32 -8.83 10.08 -92.41 -0.93 -9.76 16 16 C 0.11 2.86 6.69 22.51 0.15 3.01 16 17 C -0.22 -4.50 9.04 22.36 0.20 -4.30 16 18 C -0.09 -1.46 10.04 22.25 0.22 -1.23 16 19 C -0.17 -2.83 10.04 22.28 0.22 -2.61 16 20 C -0.09 -1.64 10.04 22.25 0.22 -1.41 16 21 C -0.18 -4.38 9.99 22.37 0.22 -4.16 16 22 C 0.07 2.18 5.43 86.33 0.47 2.65 16 23 C -0.11 -4.92 4.84 30.64 0.15 -4.77 16 24 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 25 H 0.02 1.01 7.19 -2.39 -0.02 1.00 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 2.23 6.65 -2.39 -0.02 2.21 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.37 8.00 -2.39 -0.02 1.35 16 31 H 0.09 1.82 7.79 -2.38 -0.02 1.80 16 32 H 0.09 1.30 7.65 -2.39 -0.02 1.28 16 33 H 0.06 1.28 6.23 -2.39 -0.01 1.26 16 34 H 0.14 2.27 6.30 -2.91 -0.02 2.25 16 35 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 37 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 38 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.08 2.43 7.93 -2.39 -0.02 2.41 16 41 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.04 1.73 3.39 -2.39 -0.01 1.72 16 Total: -1.00 -71.78 327.22 1.86 -69.92 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.91 Total: 13.72 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 3.98 Total: -39.61 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -3.76 Total: -81.95 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.93 Total: -9.76 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -71.78 1.86 -69.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.829 kcal (2) G-P(sol) polarization free energy of solvation -71.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds