Wall clock time and date at job start Mon Mar 30 2020 01:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99639 * 2 1 4 4 H 1.48504 * 109.46983 * 239.99400 * 3 2 1 5 5 H 1.48497 * 109.47696 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47179 * 119.99974 * 3 2 1 7 7 C 1.37871 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47384 * 180.02562 * 10 9 7 12 12 C 1.38259 * 119.99799 * 89.99954 * 11 10 9 13 13 C 1.38206 * 119.99867 * 180.02562 * 12 11 10 14 14 C 1.38258 * 120.00428 * 0.02562 * 13 12 11 15 15 C 1.38210 * 119.99691 * 359.95320 * 14 13 12 16 16 C 1.50703 * 120.00084 * 180.02562 * 15 14 13 17 17 N 1.46904 * 109.46855 * 90.00219 * 16 15 14 18 18 C 1.47015 * 110.99903 * 169.99949 * 17 16 15 19 19 C 1.53095 * 109.25739 * 177.60628 * 18 17 16 20 20 O 1.43020 * 109.29124 * 56.82758 * 19 18 17 21 21 C 1.43015 * 113.73974 * 301.39847 * 20 19 18 22 22 C 1.47016 * 110.99833 * 46.36654 * 17 16 15 23 23 C 1.38211 * 119.99984 * 270.21631 * 11 10 9 24 24 H 0.96996 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46663 * 59.99940 * 9 7 2 26 26 H 1.09003 * 109.46948 * 300.00246 * 9 7 2 27 27 H 1.09005 * 109.47159 * 60.00379 * 10 9 7 28 28 H 1.09002 * 109.47038 * 300.00520 * 10 9 7 29 29 H 1.08007 * 119.99721 * 0.02562 * 12 11 10 30 30 H 1.08007 * 120.00184 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.00103 * 179.97438 * 14 13 12 32 32 H 1.08996 * 109.47045 * 330.00392 * 16 15 14 33 33 H 1.09000 * 109.46751 * 209.99696 * 16 15 14 34 34 H 1.08994 * 109.50352 * 57.67129 * 18 17 16 35 35 H 1.08995 * 109.50726 * 297.54609 * 18 17 16 36 36 H 1.09002 * 109.50646 * 176.78576 * 19 18 17 37 37 H 1.09003 * 109.50955 * 296.87129 * 19 18 17 38 38 H 1.09009 * 109.46928 * 298.66580 * 21 20 19 39 39 H 1.08998 * 109.54427 * 178.58164 * 21 20 19 40 40 H 1.09000 * 109.50473 * 302.32301 * 22 17 16 41 41 H 1.08995 * 109.50807 * 62.41268 * 22 17 16 42 42 H 1.07993 * 120.00412 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4919 -4.9672 0.0020 12 6 1.1458 -5.5660 -1.1952 13 6 0.4544 -6.7627 -1.1947 14 6 0.1083 -7.3607 0.0029 15 6 0.4547 -6.7623 1.1996 16 6 0.0781 -7.4145 2.5049 17 7 1.1547 -8.3196 2.9287 18 6 0.9357 -8.7914 4.3037 19 6 2.0455 -9.7757 4.6826 20 8 3.3162 -9.1387 4.5247 21 6 3.5625 -8.6664 3.1974 22 6 2.4681 -7.6709 2.8035 23 6 1.1430 -5.5632 1.1992 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8920 27 1 2.8727 -3.6039 0.8910 28 1 2.8714 -3.6046 -0.8890 29 1 1.4158 -5.0986 -2.1307 30 1 0.1836 -7.2303 -2.1298 31 1 -0.4323 -8.2957 0.0032 32 1 -0.8435 -7.9818 2.3750 33 1 -0.0715 -6.6471 3.2645 34 1 -0.0310 -9.2907 4.3675 35 1 0.9533 -7.9424 4.9870 36 1 1.9195 -10.0844 5.7204 37 1 1.9935 -10.6501 4.0339 38 1 3.5552 -9.5083 2.5050 39 1 4.5338 -8.1731 3.1603 40 1 2.6199 -7.3524 1.7722 41 1 2.5099 -6.8035 3.4623 42 1 1.4100 -5.0935 2.1343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260090725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:02 Heat of formation + Delta-G solvation = -30.963369 kcal Electronic energy + Delta-G solvation = -20944.382372 eV Core-core repulsion = 17888.565931 eV Total energy + Delta-G solvation = -3055.816441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.02784 -38.84881 -36.00633 -34.04611 -32.20217 -31.59562 -30.96395 -29.04699 -27.83809 -25.06850 -24.43455 -24.11984 -22.07302 -21.25582 -20.59175 -19.44980 -16.77483 -16.46414 -16.22834 -15.97125 -15.47513 -15.32397 -15.16357 -14.58220 -14.49498 -14.18352 -13.92786 -13.03071 -12.87959 -12.62684 -12.48767 -12.34016 -12.09797 -11.98068 -11.54238 -11.48734 -11.26227 -10.95031 -10.77074 -10.74225 -10.66371 -10.46485 -9.86343 -9.80664 -9.62531 -9.12961 -8.66772 -8.37694 -8.31804 -8.08691 -6.01222 -4.04649 1.63804 1.79459 3.32139 3.36651 3.38956 3.60039 3.74705 4.22042 4.44927 4.64259 4.78829 4.85389 4.96854 5.04614 5.13251 5.15393 5.33368 5.34270 5.37645 5.42208 5.46879 5.56700 5.59689 5.60652 5.81192 5.82375 5.84733 5.98110 6.13168 6.37545 6.47918 6.63652 6.73359 6.77562 6.85317 6.89936 6.97099 6.99432 7.12500 7.39809 7.65591 7.79711 7.98302 8.38721 9.02168 9.59503 11.09748 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.003675 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.907367 B = 7616.244203 C = 8216.443467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.080 4.080 11 C -0.056 4.056 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.090 4.090 16 C 0.097 3.903 17 N -0.531 5.531 18 C 0.015 3.985 19 C 0.065 3.935 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.013 3.987 23 C -0.114 4.114 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 -19.857 5.335 20.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.006 4.006 10 C -0.118 4.118 11 C -0.056 4.056 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.136 4.136 15 C -0.091 4.091 16 C -0.029 4.029 17 N -0.256 5.256 18 C -0.113 4.113 19 C -0.012 4.012 20 O -0.306 6.306 21 C -0.013 4.013 22 C -0.115 4.115 23 C -0.132 4.132 24 H 0.071 0.929 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.062 0.938 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.719 -20.128 5.194 20.858 hybrid contribution 0.055 1.748 0.250 1.766 sum 1.774 -18.380 5.444 19.251 Atomic orbital electron populations 1.69961 1.06069 1.26743 1.50573 1.25020 0.94841 0.99240 0.95262 0.86655 0.79584 0.83101 0.78645 1.20201 1.21271 1.20218 1.21220 0.93017 0.90997 1.50969 0.92652 1.19057 0.93634 0.90439 0.97469 1.20843 0.98365 0.91322 1.01244 1.20335 0.96626 0.96170 0.92445 1.21112 0.99047 0.95375 0.98030 1.21059 0.99203 0.96054 0.97604 1.20798 1.01348 0.99649 0.91835 1.19562 0.99920 0.95380 0.94218 1.21060 0.94137 0.94015 0.93738 1.62374 1.02274 1.38861 1.22079 1.22807 1.00071 0.99071 0.89345 1.22630 0.82578 0.94426 1.01572 1.87977 1.35591 1.77081 1.29997 1.22703 0.98048 0.96789 0.83744 1.22913 0.89157 0.96179 1.03248 1.20952 0.99341 0.94893 0.98026 0.92914 0.96448 0.96549 0.92357 0.92201 0.86228 0.86590 0.86689 0.89877 0.93776 0.89679 0.93839 0.88631 0.92381 0.92391 0.88422 0.88521 0.93772 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 10 C -0.08 -1.66 5.28 -27.88 -0.15 -1.81 16 11 C -0.06 -1.01 5.13 -104.62 -0.54 -1.55 16 12 C -0.12 -1.94 9.70 -39.59 -0.38 -2.32 16 13 C -0.12 -1.73 10.05 -39.59 -0.40 -2.13 16 14 C -0.12 -1.62 9.70 -39.58 -0.38 -2.00 16 15 C -0.09 -1.30 4.14 -104.62 -0.43 -1.73 16 16 C 0.10 1.18 5.44 -4.97 -0.03 1.16 16 17 N -0.53 -6.14 4.87 -235.75 -1.15 -7.29 16 18 C 0.02 0.15 5.63 -3.71 -0.02 0.13 16 19 C 0.07 0.60 7.01 37.21 0.26 0.86 16 20 O -0.39 -4.57 10.83 -35.23 -0.38 -4.95 16 21 C 0.06 0.69 7.01 37.21 0.26 0.95 16 22 C 0.01 0.16 4.66 -3.71 -0.02 0.14 16 23 C -0.11 -1.87 7.53 -39.58 -0.30 -2.17 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 28 H 0.06 1.19 8.09 -51.93 -0.42 0.78 16 29 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 30 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.04 0.55 8.02 -51.93 -0.42 0.14 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.60 8.14 -51.92 -0.42 0.17 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.27 5.92 -51.93 -0.31 0.96 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -30.93 340.40 -10.38 -41.31 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.02 Total: -1.16 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.67 Total: -23.37 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: -0.41 Total: -33.59 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.95 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.93 -10.38 -41.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.349 kcal (2) G-P(sol) polarization free energy of solvation -30.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds