Wall clock time and date at job start Mon Mar 30 2020 01:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99639 * 2 1 4 4 H 1.48504 * 109.46983 * 239.99400 * 3 2 1 5 5 H 1.48497 * 109.47696 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47179 * 119.99974 * 3 2 1 7 7 C 1.37871 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00256 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47384 * 180.02562 * 10 9 7 12 12 C 1.38259 * 119.99799 * 89.99954 * 11 10 9 13 13 C 1.38206 * 119.99867 * 180.02562 * 12 11 10 14 14 C 1.38258 * 120.00428 * 0.02562 * 13 12 11 15 15 C 1.38210 * 119.99691 * 359.95320 * 14 13 12 16 16 C 1.50703 * 120.00084 * 180.02562 * 15 14 13 17 17 N 1.46904 * 109.46855 * 90.00219 * 16 15 14 18 18 C 1.47015 * 110.99903 * 169.99949 * 17 16 15 19 19 C 1.53095 * 109.25739 * 177.60628 * 18 17 16 20 20 O 1.43020 * 109.29124 * 56.82758 * 19 18 17 21 21 C 1.43015 * 113.73974 * 301.39847 * 20 19 18 22 22 C 1.47016 * 110.99833 * 46.36654 * 17 16 15 23 23 C 1.38211 * 119.99984 * 270.21631 * 11 10 9 24 24 H 0.96996 * 119.99966 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46663 * 59.99940 * 9 7 2 26 26 H 1.09003 * 109.46948 * 300.00246 * 9 7 2 27 27 H 1.09005 * 109.47159 * 60.00379 * 10 9 7 28 28 H 1.09002 * 109.47038 * 300.00520 * 10 9 7 29 29 H 1.08007 * 119.99721 * 0.02562 * 12 11 10 30 30 H 1.08007 * 120.00184 * 179.97438 * 13 12 11 31 31 H 1.08000 * 120.00103 * 179.97438 * 14 13 12 32 32 H 1.08996 * 109.47045 * 330.00392 * 16 15 14 33 33 H 1.09000 * 109.46751 * 209.99696 * 16 15 14 34 34 H 1.08994 * 109.50352 * 57.67129 * 18 17 16 35 35 H 1.08995 * 109.50726 * 297.54609 * 18 17 16 36 36 H 1.09002 * 109.50646 * 176.78576 * 19 18 17 37 37 H 1.09003 * 109.50955 * 296.87129 * 19 18 17 38 38 H 1.09009 * 109.46928 * 298.66580 * 21 20 19 39 39 H 1.08998 * 109.54427 * 178.58164 * 21 20 19 40 40 H 1.09000 * 109.50473 * 302.32301 * 22 17 16 41 41 H 1.08995 * 109.50807 * 62.41268 * 22 17 16 42 42 H 1.07993 * 120.00412 * 0.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4919 -4.9672 0.0020 12 6 1.1458 -5.5660 -1.1952 13 6 0.4544 -6.7627 -1.1947 14 6 0.1083 -7.3607 0.0029 15 6 0.4547 -6.7623 1.1996 16 6 0.0781 -7.4145 2.5049 17 7 1.1547 -8.3196 2.9287 18 6 0.9357 -8.7914 4.3037 19 6 2.0455 -9.7757 4.6826 20 8 3.3162 -9.1387 4.5247 21 6 3.5625 -8.6664 3.1974 22 6 2.4681 -7.6709 2.8035 23 6 1.1430 -5.5632 1.1992 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5574 -0.8881 26 1 0.6248 -2.5563 0.8920 27 1 2.8727 -3.6039 0.8910 28 1 2.8714 -3.6046 -0.8890 29 1 1.4158 -5.0986 -2.1307 30 1 0.1836 -7.2303 -2.1298 31 1 -0.4323 -8.2957 0.0032 32 1 -0.8435 -7.9818 2.3750 33 1 -0.0715 -6.6471 3.2645 34 1 -0.0310 -9.2907 4.3675 35 1 0.9533 -7.9424 4.9870 36 1 1.9195 -10.0844 5.7204 37 1 1.9935 -10.6501 4.0339 38 1 3.5552 -9.5083 2.5050 39 1 4.5338 -8.1731 3.1603 40 1 2.6199 -7.3524 1.7722 41 1 2.5099 -6.8035 3.4623 42 1 1.4100 -5.0935 2.1343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260090725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:01 Heat of formation + Delta-G solvation = -49.487934 kcal Electronic energy + Delta-G solvation = -20945.185658 eV Core-core repulsion = 17888.565931 eV Total energy + Delta-G solvation = -3056.619726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03341 -39.92186 -37.03185 -35.84668 -34.00094 -32.60435 -31.94268 -30.71572 -28.86553 -26.94627 -25.40709 -24.98215 -23.72955 -22.61308 -21.59027 -20.75835 -18.56110 -17.61684 -17.33488 -17.03275 -16.62058 -16.55089 -16.29229 -15.97750 -15.68328 -15.23411 -14.97206 -14.56827 -14.48175 -14.10109 -13.87322 -13.64670 -13.25117 -13.10323 -12.98392 -12.81588 -12.58504 -12.40672 -12.33840 -12.02615 -11.93708 -11.63756 -11.58191 -11.49719 -11.16948 -10.67699 -10.58242 -9.75041 -9.49060 -9.32276 -8.22145 -6.34871 0.43411 0.54600 1.38376 1.41671 1.49708 2.38885 2.65135 2.92347 3.10137 3.10380 3.67901 3.89731 3.95230 4.02589 4.08957 4.15394 4.23327 4.29190 4.31930 4.41842 4.47235 4.59530 4.67142 4.67757 4.72621 4.81160 4.82789 4.82880 4.91088 4.99139 5.02024 5.17663 5.26930 5.45360 5.54065 5.60191 5.66498 5.80553 5.85902 5.89404 5.94544 6.15445 6.17418 6.20934 6.81668 7.34769 8.89224 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021752 B = 0.003675 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.907367 B = 7616.244203 C = 8216.443467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.062 0.938 9 C 0.040 3.960 10 C -0.066 4.066 11 C -0.083 4.083 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.110 4.110 15 C -0.088 4.088 16 C 0.100 3.900 17 N -0.530 5.530 18 C 0.014 3.986 19 C 0.062 3.938 20 O -0.407 6.407 21 C 0.067 3.933 22 C 0.016 3.984 23 C -0.123 4.123 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.014 1.014 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.120 0.880 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.035 0.965 34 H 0.108 0.892 35 H 0.033 0.967 36 H 0.117 0.883 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.026 0.974 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 -21.506 5.373 22.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.002 3.998 10 C -0.103 4.103 11 C -0.083 4.083 12 C -0.150 4.150 13 C -0.134 4.134 14 C -0.129 4.129 15 C -0.088 4.088 16 C -0.027 4.027 17 N -0.255 5.255 18 C -0.114 4.114 19 C -0.015 4.015 20 O -0.326 6.326 21 C -0.010 4.010 22 C -0.112 4.112 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.004 0.996 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.123 0.877 33 H 0.053 0.947 34 H 0.126 0.874 35 H 0.051 0.949 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.863 -21.795 5.235 22.492 hybrid contribution -0.047 2.173 0.261 2.189 sum 1.816 -19.621 5.496 20.457 Atomic orbital electron populations 1.70104 1.07900 1.27904 1.51427 1.26005 0.95763 1.03442 0.94552 0.85482 0.78274 0.77904 0.79290 1.18967 1.20764 1.19137 1.21684 0.93629 0.92248 1.50947 0.91959 1.18880 0.93935 0.92388 0.94552 1.20550 0.97289 0.91119 1.01346 1.20156 0.98466 0.95729 0.93973 1.21242 0.99855 0.96566 0.97355 1.21393 0.97763 0.94908 0.99316 1.21189 1.00262 1.00325 0.91100 1.19786 0.98743 0.94415 0.95846 1.21085 0.95159 0.94161 0.92320 1.62433 1.01638 1.38061 1.23350 1.22916 1.01549 0.98970 0.87917 1.22832 0.81280 0.94197 1.03143 1.87955 1.36944 1.77352 1.30308 1.22716 0.97879 0.96701 0.83720 1.22835 0.90263 0.96104 1.02001 1.20932 1.00229 0.96044 0.97012 0.92719 0.99192 0.99604 0.92385 0.91818 0.86171 0.83479 0.83573 0.87682 0.94689 0.87423 0.94899 0.86515 0.91524 0.91616 0.87685 0.89817 0.95565 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.44 0.28 -57.62 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.81 9.11 25.60 0.23 -31.58 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.04 2.16 4.95 29.85 0.15 2.31 16 10 C -0.07 -2.84 5.28 29.85 0.16 -2.68 16 11 C -0.08 -3.11 5.13 -19.87 -0.10 -3.21 16 12 C -0.13 -4.34 9.70 22.27 0.22 -4.13 16 13 C -0.12 -3.07 10.05 22.27 0.22 -2.85 16 14 C -0.11 -2.75 9.70 22.27 0.22 -2.53 16 15 C -0.09 -2.42 4.14 -19.86 -0.08 -2.50 16 16 C 0.10 2.27 5.44 85.56 0.47 2.73 16 17 N -0.53 -11.39 4.87 -899.79 -4.38 -15.77 16 18 C 0.01 0.25 5.63 86.31 0.49 0.74 16 19 C 0.06 1.01 7.01 72.01 0.50 1.51 16 20 O -0.41 -9.03 10.83 -148.98 -1.61 -10.64 16 21 C 0.07 1.38 7.01 72.01 0.50 1.88 16 22 C 0.02 0.39 4.66 86.31 0.40 0.79 16 23 C -0.12 -4.19 7.53 22.27 0.17 -4.02 16 24 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 25 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 26 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 27 H 0.06 2.44 8.09 -2.38 -0.02 2.42 16 28 H 0.06 2.63 8.09 -2.39 -0.02 2.61 16 29 H 0.12 3.83 8.06 -2.91 -0.02 3.80 16 30 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 32 H 0.11 1.95 8.09 -2.39 -0.02 1.93 16 33 H 0.03 0.86 8.02 -2.39 -0.02 0.84 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.08 2.20 5.92 -2.39 -0.01 2.19 16 41 H 0.03 0.70 8.14 -2.39 -0.02 0.69 16 42 H 0.10 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -68.02 340.40 1.29 -66.74 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.97 Total: 13.62 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 4.00 Total: -43.06 kcal Atomic # 7 Polarization: -69.30 SS G_CDS: -4.10 Total: -73.40 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.61 Total: -10.64 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.02 1.29 -66.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260090725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.248 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds