Wall clock time and date at job start Mon Mar 30 2020 01:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46976 * 269.99698 * 3 2 1 5 5 H 1.48497 * 109.47342 * 29.99931 * 3 2 1 6 6 H 1.48498 * 109.47145 * 150.00252 * 3 2 1 7 7 C 1.38808 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00159 * 158.16409 * 7 2 1 9 9 N 1.36936 * 120.00159 * 338.16402 * 7 2 1 10 10 C 1.46498 * 120.00383 * 145.71523 * 9 7 2 11 11 C 1.50701 * 109.46751 * 270.00157 * 10 9 7 12 12 C 1.38239 * 119.99795 * 269.72429 * 11 10 9 13 13 C 1.38240 * 119.99976 * 179.76575 * 12 11 10 14 14 C 1.38237 * 119.99736 * 0.50670 * 13 12 11 15 15 C 1.38235 * 119.99980 * 359.74807 * 14 13 12 16 16 C 1.38227 * 120.00370 * 89.99958 * 11 10 9 17 17 C 1.46502 * 119.99632 * 325.71071 * 9 7 2 18 18 C 1.52999 * 109.47560 * 274.47756 * 17 9 7 19 19 C 1.53184 * 109.54094 * 294.55874 * 18 17 9 20 20 C 1.53093 * 109.16141 * 183.15081 * 19 18 17 21 21 O 1.42902 * 109.41651 * 57.60663 * 20 19 18 22 22 C 1.42909 * 114.09896 * 298.84192 * 21 20 19 23 23 C 1.53090 * 109.41361 * 61.15759 * 22 21 20 24 24 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46967 * 29.99441 * 10 9 7 26 26 H 1.09001 * 109.47415 * 150.00591 * 10 9 7 27 27 H 1.08007 * 120.00115 * 359.97438 * 12 11 10 28 28 H 1.07994 * 119.99896 * 180.22962 * 13 12 11 29 29 H 1.07997 * 119.99883 * 179.71813 * 14 13 12 30 30 H 1.07997 * 119.99738 * 179.97438 * 15 14 13 31 31 H 1.08003 * 119.99994 * 359.97438 * 16 11 10 32 32 H 1.09001 * 109.46831 * 154.47795 * 17 9 7 33 33 H 1.08999 * 109.47098 * 34.47898 * 17 9 7 34 34 H 1.09000 * 109.61463 * 54.77780 * 18 17 9 35 35 H 1.08997 * 109.51746 * 303.05154 * 19 18 17 36 36 H 1.08993 * 109.52092 * 63.24587 * 19 18 17 37 37 H 1.09004 * 109.47860 * 297.62642 * 20 19 18 38 38 H 1.08995 * 109.48066 * 177.59257 * 20 19 18 39 39 H 1.09001 * 109.47962 * 301.17916 * 22 21 20 40 40 H 1.08997 * 109.49170 * 181.14422 * 22 21 20 41 41 H 1.09002 * 109.52288 * 182.48913 * 23 22 21 42 42 H 1.09006 * 109.52570 * 62.29664 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0321 -1.2358 -0.3473 9 7 1.3993 -2.3453 0.4421 10 6 1.7175 -3.6330 -0.1796 11 6 0.7802 -3.8788 -1.3338 12 6 -0.4140 -4.5429 -1.1250 13 6 -1.2761 -4.7641 -2.1828 14 6 -0.9391 -4.3303 -3.4513 15 6 0.2575 -3.6708 -3.6611 16 6 1.1171 -3.4451 -2.6023 17 6 0.4275 -2.2805 1.5365 18 6 1.1632 -2.3447 2.8765 19 6 1.8362 -3.7126 3.0265 20 6 2.5029 -3.7965 4.4020 21 8 1.5231 -3.5779 5.4190 22 6 0.8940 -2.2962 5.3574 23 6 0.1626 -2.1520 4.0202 24 1 -0.4850 0.8400 -0.0004 25 1 2.7450 -3.6169 -0.5432 26 1 1.6047 -4.4295 0.5559 27 1 -0.6751 -4.8861 -0.1347 28 1 -2.2108 -5.2797 -2.0189 29 1 -1.6105 -4.5071 -4.2785 30 1 0.5209 -3.3323 -4.6522 31 1 2.0520 -2.9297 -2.7662 32 1 -0.2622 -3.1211 1.4601 33 1 -0.1300 -1.3461 1.4725 34 1 1.9188 -1.5602 2.9170 35 1 1.0868 -4.4990 2.9364 36 1 2.5896 -3.8351 2.2484 37 1 3.2799 -3.0356 4.4764 38 1 2.9469 -4.7835 4.5312 39 1 1.6500 -1.5157 5.4441 40 1 0.1791 -2.2022 6.1747 41 1 -0.2807 -1.1586 3.9528 42 1 -0.6205 -2.9070 3.9501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264683252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:54 Heat of formation + Delta-G solvation = -14.420144 kcal Electronic energy + Delta-G solvation = -21993.362600 eV Core-core repulsion = 18938.263527 eV Total energy + Delta-G solvation = -3055.099073 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.02237 -38.43605 -35.95004 -33.13266 -31.97439 -30.66222 -30.17900 -29.81876 -26.75677 -25.51920 -23.22486 -23.03680 -21.84858 -21.28193 -19.93958 -19.36503 -16.72163 -16.14104 -15.65480 -15.57337 -15.01381 -14.47876 -14.37569 -14.34155 -14.06560 -13.60465 -13.37994 -12.81994 -12.75350 -12.59007 -11.96182 -11.91938 -11.73859 -11.34903 -10.99404 -10.91279 -10.88085 -10.73324 -10.49233 -10.34580 -10.27728 -10.10573 -9.95496 -9.66055 -9.52850 -9.04309 -8.55324 -8.19951 -7.97448 -6.63594 -5.79173 -3.35938 2.11136 2.13561 3.31862 3.40216 3.42433 4.19818 4.40136 4.56259 5.19796 5.29460 5.38331 5.45610 5.51337 5.52915 5.55159 5.58904 5.68942 5.75920 5.84050 5.86603 5.98428 6.07120 6.12913 6.23738 6.33879 6.34834 6.37393 6.51568 6.57711 6.67232 6.75970 6.78941 6.80667 6.92972 7.14231 7.18676 7.25240 7.49979 7.51510 7.70937 7.75217 7.81699 8.46293 9.14414 9.77166 10.33521 11.17521 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.007256 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.132805 B = 3857.915295 C = 5329.738017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.012 3.988 3 Si 0.893 3.107 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.569 5.569 10 C 0.172 3.828 11 C -0.072 4.072 12 C -0.117 4.117 13 C -0.127 4.127 14 C -0.143 4.143 15 C -0.125 4.125 16 C -0.099 4.099 17 C 0.149 3.851 18 C -0.104 4.104 19 C -0.141 4.141 20 C 0.060 3.940 21 O -0.392 6.392 22 C 0.063 3.937 23 C -0.147 4.147 24 H 0.254 0.746 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.022 0.978 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.083 0.917 39 H 0.045 0.955 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -7.208 2.833 7.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.188 4.188 3 Si 0.723 3.277 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.287 5.287 10 C 0.046 3.954 11 C -0.075 4.075 12 C -0.136 4.136 13 C -0.145 4.145 14 C -0.162 4.162 15 C -0.143 4.143 16 C -0.118 4.118 17 C 0.023 3.977 18 C -0.125 4.125 19 C -0.179 4.179 20 C -0.016 4.016 21 O -0.311 6.311 22 C -0.014 4.014 23 C -0.185 4.185 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.132 0.868 32 H 0.040 0.960 33 H 0.119 0.881 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.063 0.937 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.672 -7.184 2.995 7.813 hybrid contribution 0.239 1.314 -0.401 1.394 sum 0.910 -5.870 2.594 6.482 Atomic orbital electron populations 1.69935 1.05476 1.25553 1.51249 1.25102 0.94940 0.98533 1.00262 0.86454 0.79523 0.83931 0.77825 1.21343 1.21534 1.20378 1.19034 0.93999 0.85435 1.39915 0.92052 1.43971 1.48951 1.01929 1.33873 1.20167 0.95075 0.89571 0.90603 1.21044 0.96864 0.93695 0.95918 1.20909 0.94638 1.00065 0.97940 1.20948 0.98937 1.01216 0.93377 1.20863 0.97243 1.01335 0.96717 1.21010 0.94976 0.99746 0.98575 1.20940 0.99709 0.98682 0.92449 1.21065 0.90625 1.02526 0.83509 1.21771 0.97918 0.95991 0.96781 1.22208 1.00623 0.98674 0.96393 1.22609 0.90278 1.00569 0.88159 1.87836 1.55833 1.35195 1.52250 1.22550 0.95954 0.85061 0.97802 1.22164 0.99154 1.02185 0.95041 0.93582 0.93143 0.93442 0.87337 0.87392 0.87463 0.87327 0.86760 0.95977 0.88110 0.91270 0.92379 0.90552 0.93693 0.89894 0.93679 0.89791 0.91218 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.47 11.21 55.49 0.62 -23.85 16 2 C 0.01 0.32 5.02 -17.43 -0.09 0.23 16 3 Si 0.89 20.97 29.61 -169.99 -5.03 15.94 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.25 -6.51 9.47 -15.06 -0.14 -6.65 16 8 H 0.06 1.58 7.92 -52.48 -0.42 1.16 16 9 N -0.57 -13.09 2.20 -174.61 -0.38 -13.48 16 10 C 0.17 3.45 4.92 -5.19 -0.03 3.42 16 11 C -0.07 -1.45 5.46 -104.63 -0.57 -2.02 16 12 C -0.12 -2.20 9.70 -39.58 -0.38 -2.58 16 13 C -0.13 -2.19 10.05 -39.58 -0.40 -2.59 16 14 C -0.14 -2.42 10.05 -39.58 -0.40 -2.82 16 15 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 16 C -0.10 -1.96 9.70 -39.59 -0.38 -2.34 16 17 C 0.15 3.28 4.77 -4.04 -0.02 3.26 16 18 C -0.10 -1.96 2.46 -90.43 -0.22 -2.18 16 19 C -0.14 -2.34 4.40 -26.59 -0.12 -2.46 16 20 C 0.06 0.90 6.84 37.21 0.25 1.16 16 21 O -0.39 -6.31 10.77 -35.23 -0.38 -6.69 16 22 C 0.06 0.94 6.84 37.20 0.25 1.19 16 23 C -0.15 -2.44 5.42 -26.59 -0.14 -2.58 16 24 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 25 H 0.05 0.99 7.98 -51.93 -0.41 0.57 16 26 H 0.05 0.87 6.49 -51.93 -0.34 0.53 16 27 H 0.11 1.92 8.06 -52.48 -0.42 1.49 16 28 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.11 2.23 8.06 -52.48 -0.42 1.81 16 32 H 0.02 0.48 8.04 -51.93 -0.42 0.06 16 33 H 0.10 2.59 5.28 -51.93 -0.27 2.31 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.30 6.53 -51.93 -0.34 0.96 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -28.13 336.23 -9.72 -37.85 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.83 Total: 4.75 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -2.78 Total: -19.58 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.24 Total: -37.32 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.38 Total: -6.69 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.13 -9.72 -37.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264683252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.428 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds