Wall clock time and date at job start Mon Mar 30 2020 01:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99874 * 2 1 4 4 H 1.48500 * 109.46976 * 269.99698 * 3 2 1 5 5 H 1.48497 * 109.47342 * 29.99931 * 3 2 1 6 6 H 1.48498 * 109.47145 * 150.00252 * 3 2 1 7 7 C 1.38808 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00159 * 158.16409 * 7 2 1 9 9 N 1.36936 * 120.00159 * 338.16402 * 7 2 1 10 10 C 1.46498 * 120.00383 * 145.71523 * 9 7 2 11 11 C 1.50701 * 109.46751 * 270.00157 * 10 9 7 12 12 C 1.38239 * 119.99795 * 269.72429 * 11 10 9 13 13 C 1.38240 * 119.99976 * 179.76575 * 12 11 10 14 14 C 1.38237 * 119.99736 * 0.50670 * 13 12 11 15 15 C 1.38235 * 119.99980 * 359.74807 * 14 13 12 16 16 C 1.38227 * 120.00370 * 89.99958 * 11 10 9 17 17 C 1.46502 * 119.99632 * 325.71071 * 9 7 2 18 18 C 1.52999 * 109.47560 * 274.47756 * 17 9 7 19 19 C 1.53184 * 109.54094 * 294.55874 * 18 17 9 20 20 C 1.53093 * 109.16141 * 183.15081 * 19 18 17 21 21 O 1.42902 * 109.41651 * 57.60663 * 20 19 18 22 22 C 1.42909 * 114.09896 * 298.84192 * 21 20 19 23 23 C 1.53090 * 109.41361 * 61.15759 * 22 21 20 24 24 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46967 * 29.99441 * 10 9 7 26 26 H 1.09001 * 109.47415 * 150.00591 * 10 9 7 27 27 H 1.08007 * 120.00115 * 359.97438 * 12 11 10 28 28 H 1.07994 * 119.99896 * 180.22962 * 13 12 11 29 29 H 1.07997 * 119.99883 * 179.71813 * 14 13 12 30 30 H 1.07997 * 119.99738 * 179.97438 * 15 14 13 31 31 H 1.08003 * 119.99994 * 359.97438 * 16 11 10 32 32 H 1.09001 * 109.46831 * 154.47795 * 17 9 7 33 33 H 1.08999 * 109.47098 * 34.47898 * 17 9 7 34 34 H 1.09000 * 109.61463 * 54.77780 * 18 17 9 35 35 H 1.08997 * 109.51746 * 303.05154 * 19 18 17 36 36 H 1.08993 * 109.52092 * 63.24587 * 19 18 17 37 37 H 1.09004 * 109.47860 * 297.62642 * 20 19 18 38 38 H 1.08995 * 109.48066 * 177.59257 * 20 19 18 39 39 H 1.09001 * 109.47962 * 301.17916 * 22 21 20 40 40 H 1.08997 * 109.49170 * 181.14422 * 22 21 20 41 41 H 1.09002 * 109.52288 * 182.48913 * 23 22 21 42 42 H 1.09006 * 109.52570 * 62.29664 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0321 -1.2358 -0.3473 9 7 1.3993 -2.3453 0.4421 10 6 1.7175 -3.6330 -0.1796 11 6 0.7802 -3.8788 -1.3338 12 6 -0.4140 -4.5429 -1.1250 13 6 -1.2761 -4.7641 -2.1828 14 6 -0.9391 -4.3303 -3.4513 15 6 0.2575 -3.6708 -3.6611 16 6 1.1171 -3.4451 -2.6023 17 6 0.4275 -2.2805 1.5365 18 6 1.1632 -2.3447 2.8765 19 6 1.8362 -3.7126 3.0265 20 6 2.5029 -3.7965 4.4020 21 8 1.5231 -3.5779 5.4190 22 6 0.8940 -2.2962 5.3574 23 6 0.1626 -2.1520 4.0202 24 1 -0.4850 0.8400 -0.0004 25 1 2.7450 -3.6169 -0.5432 26 1 1.6047 -4.4295 0.5559 27 1 -0.6751 -4.8861 -0.1347 28 1 -2.2108 -5.2797 -2.0189 29 1 -1.6105 -4.5071 -4.2785 30 1 0.5209 -3.3323 -4.6522 31 1 2.0520 -2.9297 -2.7662 32 1 -0.2622 -3.1211 1.4601 33 1 -0.1300 -1.3461 1.4725 34 1 1.9188 -1.5602 2.9170 35 1 1.0868 -4.4990 2.9364 36 1 2.5896 -3.8351 2.2484 37 1 3.2799 -3.0356 4.4764 38 1 2.9469 -4.7835 4.5312 39 1 1.6500 -1.5157 5.4441 40 1 0.1791 -2.2022 6.1747 41 1 -0.2807 -1.1586 3.9528 42 1 -0.6205 -2.9070 3.9501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264683252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:53 Heat of formation + Delta-G solvation = -27.562926 kcal Electronic energy + Delta-G solvation = -21993.932514 eV Core-core repulsion = 18938.263527 eV Total energy + Delta-G solvation = -3055.668987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.39485 -39.83868 -37.59168 -34.65129 -33.75926 -31.93008 -31.59892 -31.45754 -28.32639 -27.29283 -24.75894 -24.34434 -23.30843 -22.80423 -21.53102 -20.81194 -18.58615 -17.56312 -16.96405 -16.88062 -16.75655 -15.95481 -15.94503 -15.78026 -15.53873 -15.20445 -14.96564 -14.25323 -14.18141 -14.09644 -13.49497 -13.36256 -13.16784 -13.04319 -12.74495 -12.57475 -12.42756 -12.19221 -12.09859 -12.02782 -11.79348 -11.64798 -11.60090 -11.13648 -11.03495 -10.51269 -10.38646 -9.63412 -9.44607 -8.54313 -7.75879 -5.36304 0.67484 0.69418 1.42676 1.46687 1.54208 2.51183 3.01940 3.05383 3.28856 3.76472 3.99784 4.11598 4.15493 4.16513 4.22650 4.24948 4.33902 4.40472 4.42472 4.58907 4.61380 4.67325 4.79857 4.82373 4.88104 4.93987 4.96111 5.03520 5.07270 5.22517 5.33083 5.34116 5.36723 5.39275 5.62589 5.70482 5.73330 5.75071 5.93266 6.00684 6.30347 6.33580 6.49089 7.19926 7.89432 8.40640 9.16366 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.007256 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.132805 B = 3857.915295 C = 5329.738017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.032 4.032 3 Si 0.946 3.054 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.273 1.273 7 C -0.252 4.252 8 H 0.056 0.944 9 N -0.579 5.579 10 C 0.175 3.825 11 C -0.095 4.095 12 C -0.130 4.130 13 C -0.129 4.129 14 C -0.141 4.141 15 C -0.132 4.132 16 C -0.123 4.123 17 C 0.155 3.845 18 C -0.097 4.097 19 C -0.133 4.133 20 C 0.063 3.937 21 O -0.399 6.399 22 C 0.066 3.934 23 C -0.143 4.143 24 H 0.248 0.752 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.132 0.868 31 H 0.105 0.895 32 H 0.021 0.979 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.108 0.892 39 H 0.047 0.953 40 H 0.110 0.890 41 H 0.062 0.938 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.573 -8.431 3.093 8.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.230 4.230 3 Si 0.775 3.225 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.198 1.198 7 C -0.383 4.383 8 H 0.074 0.926 9 N -0.298 5.298 10 C 0.050 3.950 11 C -0.098 4.098 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.159 4.159 15 C -0.150 4.150 16 C -0.142 4.142 17 C 0.029 3.971 18 C -0.118 4.118 19 C -0.171 4.171 20 C -0.014 4.014 21 O -0.318 6.318 22 C -0.011 4.011 23 C -0.181 4.181 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.133 0.867 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.150 0.850 31 H 0.123 0.877 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.128 0.872 41 H 0.081 0.919 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.449 -8.430 3.255 9.048 hybrid contribution 0.291 1.592 -0.563 1.714 sum 0.740 -6.838 2.692 7.386 Atomic orbital electron populations 1.70078 1.06576 1.25476 1.53298 1.25631 0.95454 1.00856 1.01052 0.85624 0.78577 0.80935 0.77404 1.21570 1.22006 1.19774 1.19184 0.93872 0.86612 1.38638 0.92642 1.44048 1.48849 1.02196 1.34683 1.20173 0.95062 0.88629 0.91178 1.21073 0.97551 0.95125 0.96015 1.21110 0.94556 1.00243 0.99011 1.21349 0.99646 1.00640 0.93062 1.21305 0.97105 0.99824 0.97692 1.21337 0.95066 0.99470 0.99092 1.21063 1.00218 0.99589 0.93295 1.20901 0.90659 1.00535 0.84991 1.21583 0.97579 0.96705 0.95917 1.22099 1.00375 0.96982 0.97598 1.22668 0.89912 1.02128 0.86666 1.87836 1.56020 1.35621 1.52356 1.22615 0.96341 0.84840 0.97287 1.22118 0.98761 1.01887 0.95362 0.94285 0.93320 0.91753 0.86672 0.84412 0.84071 0.85049 0.87695 0.96081 0.91563 0.93842 0.92098 0.91254 0.93550 0.87354 0.93418 0.87225 0.91930 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.05 11.21 21.65 0.24 -51.81 16 2 C -0.03 -1.75 5.02 84.86 0.43 -1.33 16 3 Si 0.95 43.99 29.61 68.60 2.03 46.02 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -13.22 9.47 84.03 0.80 -12.42 16 8 H 0.06 2.92 7.92 -2.91 -0.02 2.89 16 9 N -0.58 -27.14 2.20 -706.35 -1.56 -28.70 16 10 C 0.17 7.09 4.92 85.63 0.42 7.51 16 11 C -0.09 -3.82 5.46 -19.87 -0.11 -3.93 16 12 C -0.13 -4.80 9.70 22.27 0.22 -4.58 16 13 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 14 C -0.14 -4.40 10.05 22.27 0.22 -4.18 16 15 C -0.13 -4.51 10.05 22.27 0.22 -4.29 16 16 C -0.12 -4.87 9.70 22.27 0.22 -4.65 16 17 C 0.15 6.98 4.77 86.38 0.41 7.40 16 18 C -0.10 -3.68 2.46 -10.67 -0.03 -3.70 16 19 C -0.13 -4.27 4.40 30.69 0.13 -4.13 16 20 C 0.06 1.74 6.84 72.01 0.49 2.23 16 21 O -0.40 -11.89 10.77 -148.98 -1.60 -13.49 16 22 C 0.07 1.82 6.84 72.01 0.49 2.32 16 23 C -0.14 -4.65 5.42 30.68 0.17 -4.49 16 24 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 25 H 0.05 1.94 7.98 -2.39 -0.02 1.92 16 26 H 0.06 2.33 6.49 -2.39 -0.02 2.32 16 27 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 28 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 29 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 30 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 31 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 32 H 0.02 0.92 8.04 -2.39 -0.02 0.90 16 33 H 0.07 3.53 5.28 -2.39 -0.01 3.51 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.32 6.53 -2.39 -0.02 2.30 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -60.69 336.23 4.40 -56.29 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.97 Total: 23.88 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.31 Total: -32.20 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.31 Total: -80.51 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -1.60 Total: -13.49 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -60.69 4.40 -56.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264683252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.729 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds