Wall clock time and date at job start Mon Mar 30 2020 02:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99856 * 2 1 4 4 C 1.38214 * 120.00073 * 180.21443 * 3 2 1 5 5 C 1.38259 * 119.99875 * 359.85209 * 4 3 2 6 6 C 1.38214 * 119.99999 * 359.96116 * 5 4 3 7 7 C 1.38207 * 120.00343 * 179.81208 * 2 1 3 8 8 C 1.50705 * 119.99958 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.50563 * 34.81120 * 8 7 2 10 10 C 1.53097 * 109.50177 * 274.72503 * 8 7 2 11 11 N 1.47019 * 109.25226 * 183.17057 * 10 8 7 12 12 C 1.46904 * 110.99818 * 182.38917 * 11 10 8 13 13 C 1.50703 * 109.46874 * 66.04924 * 12 11 10 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.47013 * 110.75153 * 58.61895 * 11 10 8 22 22 H 1.08998 * 109.50834 * 61.31942 * 21 11 10 23 23 C 1.53005 * 109.50515 * 181.44346 * 21 11 10 24 24 C 1.53091 * 109.25543 * 301.37991 * 21 11 10 25 25 O 1.43009 * 109.26158 * 56.85238 * 24 21 11 26 26 H 1.09007 * 109.47135 * 270.18855 * 1 2 3 27 27 H 1.09001 * 109.47324 * 30.18420 * 1 2 3 28 28 H 1.08999 * 109.47136 * 150.19095 * 1 2 3 29 29 H 1.07999 * 120.00021 * 0.03938 * 3 2 1 30 30 H 1.08003 * 119.99962 * 179.83284 * 4 3 2 31 31 H 1.08001 * 119.99781 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.00152 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.50789 * 63.23858 * 10 8 7 34 34 H 1.08994 * 109.54164 * 303.12520 * 10 8 7 35 35 H 1.09003 * 109.47066 * 306.05201 * 12 11 10 36 36 H 1.08996 * 109.47319 * 186.04674 * 12 11 10 37 37 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 38 38 H 1.08999 * 109.46761 * 59.99985 * 23 21 11 39 39 H 1.08995 * 109.47039 * 179.97438 * 23 21 11 40 40 H 1.08997 * 109.47121 * 300.00064 * 23 21 11 41 41 H 1.08997 * 109.51105 * 296.91228 * 24 21 11 42 42 H 1.09010 * 109.54194 * 176.80849 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0045 5 6 4.2717 0.0001 -0.0059 6 6 3.5807 -1.1969 -0.0020 7 6 2.1981 -1.1969 0.0039 8 6 1.4446 -2.5020 0.0088 9 1 0.5319 -2.3975 -0.5777 10 6 1.0867 -2.8802 1.4485 11 7 0.4193 -4.1902 1.4540 12 6 0.0076 -4.5655 2.8133 13 6 -1.0602 -3.6172 3.2946 14 1 -1.3988 -2.8155 2.6548 15 6 -1.6041 -3.7722 4.5520 16 7 -1.1916 -4.7480 5.3312 17 14 -2.9282 -2.5971 5.1482 18 1 -2.2936 -1.4443 5.8364 19 1 -3.8281 -3.3043 6.0945 20 1 -3.7156 -2.1086 3.9878 21 6 1.2872 -5.2194 0.8634 22 1 2.1993 -5.3088 1.4534 23 6 0.5524 -6.5614 0.8506 24 6 1.6431 -4.8177 -0.5704 25 8 2.2624 -3.5286 -0.5592 26 1 -0.3634 0.0034 1.0277 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8917 -0.5109 29 1 1.6582 2.1327 0.0006 30 1 4.1203 2.1328 -0.0072 31 1 5.3517 0.0002 -0.0098 32 1 4.1207 -2.1322 -0.0026 33 1 0.4168 -2.1287 1.8664 34 1 1.9952 -2.9320 2.0484 35 1 0.8677 -4.5133 3.4809 36 1 -0.3857 -5.5820 2.8062 37 1 -0.5043 -5.3583 5.0214 38 1 -0.3584 -6.4712 0.2587 39 1 1.1962 -7.3239 0.4122 40 1 0.2959 -6.8449 1.8713 41 1 0.7362 -4.7805 -1.1738 42 1 2.3321 -5.5488 -0.9935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266557090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:17 Heat of formation + Delta-G solvation = -23.737137 kcal Electronic energy + Delta-G solvation = -21981.006572 eV Core-core repulsion = 18925.503484 eV Total energy + Delta-G solvation = -3055.503088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.03374 -38.59019 -35.64094 -33.44864 -32.87246 -32.10101 -30.55979 -27.88867 -26.98145 -26.21698 -25.00584 -23.00446 -22.12702 -21.54788 -20.39976 -19.49804 -16.97737 -16.56167 -16.27801 -15.62087 -15.10578 -14.72052 -14.36938 -14.31255 -13.90011 -13.73467 -13.55442 -13.19407 -12.99462 -12.78853 -12.23039 -12.11998 -11.99876 -11.80696 -11.61730 -11.37427 -11.19969 -10.94091 -10.90389 -10.70227 -10.64780 -10.44303 -10.12915 -9.97577 -9.30959 -8.69813 -8.62045 -8.43052 -8.36278 -7.44102 -6.39666 -4.08437 1.43311 1.51772 3.41582 3.45423 3.60964 3.80651 3.97511 4.45929 4.63187 4.94347 4.97424 5.08750 5.15210 5.18548 5.32649 5.37329 5.43554 5.46395 5.56219 5.64428 5.68720 5.82297 5.82854 5.88709 5.95321 5.97534 6.10164 6.15191 6.23913 6.31362 6.39618 6.49551 6.57290 6.59789 6.63759 6.78637 6.96964 7.02995 7.11753 7.43948 7.72044 7.88787 8.26718 8.53592 8.83651 9.61941 10.99508 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.006311 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.380672 B = 4435.350552 C = 5786.871349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.071 4.071 3 C -0.124 4.124 4 C -0.120 4.120 5 C -0.133 4.133 6 C -0.091 4.091 7 C -0.075 4.075 8 C 0.131 3.869 9 H 0.076 0.924 10 C 0.046 3.954 11 N -0.523 5.523 12 C 0.179 3.821 13 C -0.588 4.588 14 H 0.057 0.943 15 C 0.015 3.985 16 N -0.914 5.914 17 Si 1.072 2.928 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.287 1.287 21 C 0.039 3.961 22 H 0.037 0.963 23 C -0.142 4.142 24 C 0.073 3.927 25 O -0.385 6.385 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.029 0.971 35 H -0.022 1.022 36 H 0.031 0.969 37 H 0.266 0.734 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.340 6.718 -12.389 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.072 4.072 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.151 4.151 6 C -0.109 4.109 7 C -0.076 4.076 8 C 0.073 3.927 9 H 0.094 0.906 10 C -0.082 4.082 11 N -0.248 5.248 12 C 0.054 3.946 13 C -0.626 4.626 14 H 0.075 0.925 15 C -0.189 4.189 16 N -0.550 5.550 17 Si 0.901 3.099 18 H -0.215 1.215 19 H -0.210 1.210 20 H -0.213 1.213 21 C -0.070 4.070 22 H 0.055 0.945 23 C -0.199 4.199 24 C -0.004 4.004 25 O -0.304 6.304 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.136 0.864 32 H 0.144 0.856 33 H 0.113 0.887 34 H 0.047 0.953 35 H -0.004 1.004 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.095 7.118 -11.459 14.803 hybrid contribution 1.623 -0.531 -0.571 1.801 sum 7.718 6.586 -12.030 15.738 Atomic orbital electron populations 1.20935 0.90955 1.02810 1.03275 1.19705 0.96246 0.92227 0.98984 1.20940 0.94209 0.97171 1.01874 1.21086 0.94309 0.97856 1.00596 1.21100 0.99645 0.92538 1.01776 1.20990 0.93636 0.98252 0.98010 1.19491 0.93947 0.93132 1.01021 1.21038 0.92133 0.84719 0.94765 0.90639 1.22521 0.97814 0.93965 0.93905 1.62329 1.37417 1.00186 1.24916 1.19933 0.94803 0.97551 0.82302 1.21966 1.22652 1.15550 1.02468 0.92510 1.25824 1.00462 0.99172 0.93410 1.70770 1.29527 1.15916 1.38820 0.83494 0.75671 0.75115 0.75668 1.21524 1.20978 1.21321 1.22256 0.95229 0.93767 0.95733 0.94547 1.21789 1.00300 0.94784 1.03035 1.22672 0.97760 0.84181 0.95737 1.87863 1.43168 1.17349 1.82068 0.90270 0.91663 0.90931 0.86103 0.86389 0.86357 0.85571 0.88693 0.95324 1.00385 0.95098 0.92331 0.91888 0.92993 0.91590 0.92577 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 9.43 36.00 0.34 -1.29 16 2 C -0.07 -1.03 5.88 -104.63 -0.62 -1.65 16 3 C -0.12 -1.57 9.70 -39.58 -0.38 -1.96 16 4 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 5 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 6 C -0.09 -1.36 9.35 -39.58 -0.37 -1.73 16 7 C -0.08 -1.20 5.07 -104.62 -0.53 -1.73 16 8 C 0.13 2.26 2.52 -27.83 -0.07 2.19 16 9 H 0.08 1.29 6.16 -51.93 -0.32 0.97 16 10 C 0.05 0.95 4.72 -3.71 -0.02 0.93 16 11 N -0.52 -11.33 4.53 -227.77 -1.03 -12.37 16 12 C 0.18 4.61 3.81 -4.97 -0.02 4.59 16 13 C -0.59 -16.45 8.48 -34.44 -0.29 -16.74 16 14 H 0.06 1.58 7.12 -52.48 -0.37 1.21 16 15 C 0.01 0.43 5.46 -17.82 -0.10 0.33 16 16 N -0.91 -27.70 13.65 55.43 0.76 -26.94 16 17 Si 1.07 25.18 29.90 -169.99 -5.08 20.10 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.04 0.72 2.59 -67.60 -0.17 0.55 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 C -0.14 -2.33 8.92 37.16 0.33 -2.00 16 24 C 0.07 1.15 6.29 37.20 0.23 1.38 16 25 O -0.39 -6.57 9.31 -35.23 -0.33 -6.90 16 26 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 28 H 0.07 0.99 6.03 -51.93 -0.31 0.68 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 31 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.13 1.88 7.35 -52.49 -0.39 1.49 16 33 H 0.09 2.07 6.63 -51.93 -0.34 1.72 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H -0.02 -0.60 7.99 -51.93 -0.41 -1.01 16 36 H 0.03 0.82 5.64 -51.93 -0.29 0.53 16 37 H 0.27 8.06 7.22 -40.82 -0.29 7.77 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 1.22 6.17 -51.93 -0.32 0.89 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 LS Contribution 330.60 15.07 4.98 4.98 Total: -1.00 -30.85 330.60 -9.67 -40.52 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.50 Total: 1.67 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.46 Total: -21.06 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: -0.28 Total: -39.31 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.33 Total: -6.90 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -5.08 Total: 20.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.85 -9.67 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266557090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.784 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds