Wall clock time and date at job start Mon Mar 30 2020 02:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38261 * 119.99856 * 2 1 4 4 C 1.38214 * 120.00073 * 180.21443 * 3 2 1 5 5 C 1.38259 * 119.99875 * 359.85209 * 4 3 2 6 6 C 1.38214 * 119.99999 * 359.96116 * 5 4 3 7 7 C 1.38207 * 120.00343 * 179.81208 * 2 1 3 8 8 C 1.50705 * 119.99958 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.50563 * 34.81120 * 8 7 2 10 10 C 1.53097 * 109.50177 * 274.72503 * 8 7 2 11 11 N 1.47019 * 109.25226 * 183.17057 * 10 8 7 12 12 C 1.46904 * 110.99818 * 182.38917 * 11 10 8 13 13 C 1.50703 * 109.46874 * 66.04924 * 12 11 10 14 14 H 1.08006 * 120.00159 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00120 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00089 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99938 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 269.99556 * 17 15 13 19 19 H 1.48503 * 109.47261 * 149.99737 * 17 15 13 20 20 H 1.48500 * 109.47454 * 29.99730 * 17 15 13 21 21 C 1.47013 * 110.75153 * 58.61895 * 11 10 8 22 22 H 1.08998 * 109.50834 * 61.31942 * 21 11 10 23 23 C 1.53005 * 109.50515 * 181.44346 * 21 11 10 24 24 C 1.53091 * 109.25543 * 301.37991 * 21 11 10 25 25 O 1.43009 * 109.26158 * 56.85238 * 24 21 11 26 26 H 1.09007 * 109.47135 * 270.18855 * 1 2 3 27 27 H 1.09001 * 109.47324 * 30.18420 * 1 2 3 28 28 H 1.08999 * 109.47136 * 150.19095 * 1 2 3 29 29 H 1.07999 * 120.00021 * 0.03938 * 3 2 1 30 30 H 1.08003 * 119.99962 * 179.83284 * 4 3 2 31 31 H 1.08001 * 119.99781 * 179.97438 * 5 4 3 32 32 H 1.08001 * 120.00152 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.50789 * 63.23858 * 10 8 7 34 34 H 1.08994 * 109.54164 * 303.12520 * 10 8 7 35 35 H 1.09003 * 109.47066 * 306.05201 * 12 11 10 36 36 H 1.08996 * 109.47319 * 186.04674 * 12 11 10 37 37 H 0.96998 * 119.99255 * 0.02562 * 16 15 13 38 38 H 1.08999 * 109.46761 * 59.99985 * 23 21 11 39 39 H 1.08995 * 109.47039 * 179.97438 * 23 21 11 40 40 H 1.08997 * 109.47121 * 300.00064 * 23 21 11 41 41 H 1.08997 * 109.51105 * 296.91228 * 24 21 11 42 42 H 1.09010 * 109.54194 * 176.80849 * 24 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1975 -0.0045 5 6 4.2717 0.0001 -0.0059 6 6 3.5807 -1.1969 -0.0020 7 6 2.1981 -1.1969 0.0039 8 6 1.4446 -2.5020 0.0088 9 1 0.5319 -2.3975 -0.5777 10 6 1.0867 -2.8802 1.4485 11 7 0.4193 -4.1902 1.4540 12 6 0.0076 -4.5655 2.8133 13 6 -1.0602 -3.6172 3.2946 14 1 -1.3988 -2.8155 2.6548 15 6 -1.6041 -3.7722 4.5520 16 7 -1.1916 -4.7480 5.3312 17 14 -2.9282 -2.5971 5.1482 18 1 -2.2936 -1.4443 5.8364 19 1 -3.8281 -3.3043 6.0945 20 1 -3.7156 -2.1086 3.9878 21 6 1.2872 -5.2194 0.8634 22 1 2.1993 -5.3088 1.4534 23 6 0.5524 -6.5614 0.8506 24 6 1.6431 -4.8177 -0.5704 25 8 2.2624 -3.5286 -0.5592 26 1 -0.3634 0.0034 1.0277 27 1 -0.3634 0.8883 -0.5167 28 1 -0.3633 -0.8917 -0.5109 29 1 1.6582 2.1327 0.0006 30 1 4.1203 2.1328 -0.0072 31 1 5.3517 0.0002 -0.0098 32 1 4.1207 -2.1322 -0.0026 33 1 0.4168 -2.1287 1.8664 34 1 1.9952 -2.9320 2.0484 35 1 0.8677 -4.5133 3.4809 36 1 -0.3857 -5.5820 2.8062 37 1 -0.5043 -5.3583 5.0214 38 1 -0.3584 -6.4712 0.2587 39 1 1.1962 -7.3239 0.4122 40 1 0.2959 -6.8449 1.8713 41 1 0.7362 -4.7805 -1.1738 42 1 2.3321 -5.5488 -0.9935 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266557090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:17 Heat of formation + Delta-G solvation = -42.373351 kcal Electronic energy + Delta-G solvation = -21981.814699 eV Core-core repulsion = 18925.503484 eV Total energy + Delta-G solvation = -3056.311215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.34802 -39.83913 -37.28274 -35.04668 -34.51150 -33.34917 -31.88152 -29.60128 -28.22739 -27.43016 -26.84745 -24.43654 -23.96071 -22.74924 -21.57085 -21.04122 -19.01555 -17.82052 -17.63450 -17.07435 -16.43435 -16.03357 -15.90845 -15.71627 -15.50863 -15.23078 -14.97146 -14.59988 -14.32470 -14.00329 -13.86488 -13.44494 -13.33766 -13.18590 -13.10699 -12.87622 -12.81202 -12.57491 -12.34490 -12.22095 -12.00335 -11.93548 -11.80970 -11.33897 -10.93343 -10.61605 -10.56098 -9.70566 -9.51898 -9.29167 -8.71140 -6.41122 0.37208 0.47909 1.50706 1.59862 1.77905 2.52374 2.60787 2.79196 2.99395 3.13093 3.75121 3.77654 3.87991 3.93612 4.01620 4.10519 4.11493 4.17652 4.26145 4.42144 4.48312 4.55219 4.64046 4.68046 4.74286 4.76560 4.80067 4.81349 4.87284 4.94630 5.00356 5.01684 5.14294 5.18744 5.29569 5.53564 5.59888 5.69061 5.71495 5.90604 6.08364 6.12136 6.25390 6.35071 6.57143 7.38865 8.67903 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.006311 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.380672 B = 4435.350552 C = 5786.871349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.115 4.115 5 C -0.134 4.134 6 C -0.108 4.108 7 C -0.103 4.103 8 C 0.145 3.855 9 H 0.077 0.923 10 C 0.055 3.945 11 N -0.528 5.528 12 C 0.192 3.808 13 C -0.597 4.597 14 H 0.055 0.945 15 C -0.036 4.036 16 N -0.937 5.937 17 Si 1.120 2.880 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.266 1.266 21 C 0.033 3.967 22 H 0.021 0.979 23 C -0.135 4.135 24 C 0.076 3.924 25 O -0.389 6.389 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.005 0.995 35 H -0.056 1.056 36 H 0.021 0.979 37 H 0.252 0.748 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.065 0.935 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.605 8.596 -14.108 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.133 4.133 5 C -0.152 4.152 6 C -0.126 4.126 7 C -0.103 4.103 8 C 0.088 3.912 9 H 0.094 0.906 10 C -0.074 4.074 11 N -0.253 5.253 12 C 0.066 3.934 13 C -0.635 4.635 14 H 0.073 0.927 15 C -0.233 4.233 16 N -0.575 5.575 17 Si 0.941 3.059 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.075 4.075 22 H 0.039 0.961 23 C -0.192 4.192 24 C 0.000 4.000 25 O -0.308 6.308 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.161 0.839 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.023 0.977 35 H -0.038 1.038 36 H 0.039 0.961 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.382 8.988 -13.212 17.207 hybrid contribution 1.634 -1.116 -0.069 1.980 sum 8.016 7.872 -13.282 17.396 Atomic orbital electron populations 1.20919 0.90561 1.03664 1.02597 1.19930 0.96808 0.92522 0.99330 1.21312 0.94864 0.97441 1.00720 1.21523 0.94261 0.98906 0.98591 1.21423 1.01026 0.92005 1.00735 1.21072 0.93421 0.99087 0.99054 1.19520 0.94545 0.92835 1.03423 1.20836 0.92661 0.85706 0.92032 0.90566 1.22441 0.95907 0.92841 0.96216 1.62300 1.39074 1.01740 1.22150 1.19636 0.93078 0.96682 0.84039 1.22272 1.22864 1.15676 1.02712 0.92654 1.27387 1.02200 0.99867 0.93837 1.70903 1.30145 1.16986 1.39448 0.82908 0.73402 0.73536 0.76090 1.19996 1.20699 1.19093 1.22477 0.94165 0.93791 0.97112 0.96064 1.21742 1.01064 0.94734 1.01656 1.22832 0.99207 0.84336 0.93628 1.87876 1.43454 1.17808 1.81653 0.91659 0.88965 0.91921 0.83424 0.82996 0.83863 0.86392 0.90704 0.97722 1.03820 0.96147 0.93854 0.91634 0.89071 0.94397 0.91662 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.43 71.23 0.67 -2.45 16 2 C -0.09 -2.39 5.88 -19.87 -0.12 -2.51 16 3 C -0.13 -2.85 9.70 22.27 0.22 -2.63 16 4 C -0.12 -2.39 10.05 22.27 0.22 -2.16 16 5 C -0.13 -3.13 10.05 22.27 0.22 -2.91 16 6 C -0.11 -3.18 9.35 22.27 0.21 -2.97 16 7 C -0.10 -3.26 5.07 -19.87 -0.10 -3.36 16 8 C 0.15 5.08 2.52 29.88 0.08 5.16 16 9 H 0.08 2.63 6.16 -2.39 -0.01 2.62 16 10 C 0.05 2.33 4.72 86.31 0.41 2.74 16 11 N -0.53 -23.74 4.53 -874.52 -3.96 -27.70 16 12 C 0.19 10.40 3.81 85.56 0.33 10.73 16 13 C -0.60 -34.51 8.48 25.60 0.22 -34.29 16 14 H 0.06 3.15 7.12 -2.91 -0.02 3.13 16 15 C -0.04 -2.07 5.46 84.65 0.46 -1.61 16 16 N -0.94 -58.56 13.65 21.45 0.29 -58.26 16 17 Si 1.12 50.68 29.90 68.60 2.05 52.73 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 C 0.03 1.23 2.59 44.93 0.12 1.35 16 22 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 23 C -0.13 -4.40 8.92 71.98 0.64 -3.76 16 24 C 0.08 2.28 6.29 72.01 0.45 2.73 16 25 O -0.39 -13.08 9.31 -148.98 -1.39 -14.46 16 26 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 27 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 28 H 0.06 1.70 6.03 -2.39 -0.01 1.69 16 29 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.12 3.54 7.35 -2.91 -0.02 3.52 16 33 H 0.07 3.44 6.63 -2.39 -0.02 3.42 16 34 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 35 H -0.06 -3.34 7.99 -2.39 -0.02 -3.36 16 36 H 0.02 1.16 5.64 -2.39 -0.01 1.14 16 37 H 0.25 16.05 7.22 -92.71 -0.67 15.38 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.04 1.44 6.17 -2.39 -0.01 1.42 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.13 2.89 8.14 -2.38 -0.02 2.88 16 Total: -1.00 -69.31 330.60 2.11 -67.20 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.09 Total: 16.44 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.03 Total: -35.94 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -3.67 Total: -85.96 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.39 Total: -14.46 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -69.31 2.11 -67.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266557090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.827 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds