Wall clock time and date at job start Mon Mar 30 2020 01:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99576 * 2 1 4 4 C 1.38240 * 120.00058 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.00050 * 180.02562 * 4 3 2 6 6 C 1.38232 * 119.99631 * 359.97438 * 4 3 2 7 7 C 1.50703 * 119.99860 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47064 * 89.99959 * 7 6 4 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 10 8 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47411 * 89.99586 * 17 15 13 19 19 H 1.48497 * 109.47183 * 209.99666 * 17 15 13 20 20 H 1.48503 * 109.46948 * 330.00085 * 17 15 13 21 21 C 1.38234 * 120.00312 * 0.27932 * 6 4 3 22 22 C 1.50700 * 120.00283 * 179.72884 * 21 6 4 23 23 C 1.38235 * 119.99933 * 359.51395 * 21 6 4 24 24 H 1.09000 * 109.47210 * 90.00416 * 1 2 3 25 25 H 1.09001 * 109.47028 * 209.99562 * 1 2 3 26 26 H 1.08995 * 109.47328 * 329.99473 * 1 2 3 27 27 H 1.08002 * 120.00221 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.46863 * 269.97527 * 5 4 3 29 29 H 1.08994 * 109.47071 * 29.97441 * 5 4 3 30 30 H 1.09000 * 109.46782 * 149.97607 * 5 4 3 31 31 H 1.09002 * 109.47152 * 330.00052 * 7 6 4 32 32 H 1.09001 * 109.46980 * 210.00152 * 7 6 4 33 33 H 1.08995 * 109.47620 * 89.99771 * 11 10 8 34 34 H 1.09006 * 109.47028 * 209.99878 * 11 10 8 35 35 H 1.09002 * 109.47109 * 329.99455 * 11 10 8 36 36 H 1.09000 * 109.47018 * 209.99971 * 12 10 8 37 37 H 1.09000 * 109.47828 * 330.00266 * 12 10 8 38 38 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.47506 * 89.99737 * 22 21 6 40 40 H 1.09006 * 109.47000 * 210.00072 * 22 21 6 41 41 H 1.09005 * 109.46653 * 329.99996 * 22 21 6 42 42 H 1.08002 * 120.00360 * 180.27290 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.3339 2.5025 0.0011 6 6 4.2717 0.0002 0.0016 7 6 5.7787 0.0003 0.0028 8 6 6.2799 0.0009 1.4240 9 8 5.4910 0.0009 2.3452 10 7 7.6048 0.0006 1.6713 11 6 8.5576 0.0001 0.5586 12 6 8.0920 0.0007 3.0529 13 6 8.2588 -1.4202 3.5268 14 1 8.0248 -2.2410 2.8652 15 6 8.7100 -1.6720 4.8051 16 7 8.9954 -0.6724 5.6105 17 14 8.9173 -3.4331 5.3923 18 1 10.2925 -3.8999 5.0817 19 1 8.6928 -3.4956 6.8588 20 1 7.9316 -4.3040 4.7029 21 6 3.5806 -1.1970 -0.0037 22 6 4.3341 -2.5020 -0.0087 23 6 2.1983 -1.1971 0.0001 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.6580 2.1325 -0.0004 28 1 4.5163 2.8171 -1.0264 29 1 3.7444 3.2620 0.5145 30 1 5.2859 2.3721 0.5157 31 1 6.1424 0.8901 -0.5112 32 1 6.1424 -0.8899 -0.5104 33 1 8.7943 1.0276 0.2823 34 1 9.4699 -0.5139 0.8616 35 1 8.1178 -0.5138 -0.2962 36 1 9.0523 0.5142 3.0994 37 1 7.3737 0.5148 3.6915 38 1 9.3132 -0.8495 6.5097 39 1 4.5154 -2.8209 1.0176 40 1 3.7453 -3.2596 -0.5260 41 1 5.2868 -2.3695 -0.5215 42 1 1.6583 -2.1324 0.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271399875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:54 Heat of formation + Delta-G solvation = -48.297487 kcal Electronic energy + Delta-G solvation = -21511.765961 eV Core-core repulsion = 18455.197856 eV Total energy + Delta-G solvation = -3056.568105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.30951 -39.92376 -36.56613 -35.23668 -34.66999 -34.47466 -31.23246 -29.45328 -28.80498 -27.60245 -27.31662 -26.28320 -24.41959 -21.67570 -21.17948 -19.84996 -18.70408 -17.86176 -17.36841 -17.21850 -16.59458 -16.03884 -15.77301 -15.21333 -15.04500 -14.43267 -14.25202 -14.08626 -13.93010 -13.84540 -13.81402 -13.63761 -13.51405 -13.45594 -13.42448 -13.08486 -12.85800 -12.68890 -12.52868 -12.41769 -12.21408 -12.04233 -11.73918 -11.70529 -11.65576 -10.64870 -10.62258 -9.40677 -9.38702 -9.23965 -8.22894 -6.37811 0.44162 0.51911 1.34789 1.38083 1.48233 1.88169 2.32302 2.45940 2.86730 3.06485 3.71455 3.86093 3.96304 3.99950 4.07922 4.17429 4.38154 4.44849 4.48195 4.56885 4.61747 4.70099 4.72650 4.77812 4.79351 4.81801 4.87541 4.96514 4.98264 5.03015 5.04482 5.10463 5.22977 5.39538 5.39927 5.56251 5.63616 5.70813 5.80926 5.85566 6.06279 6.21211 6.70070 6.81728 7.28523 7.53223 8.84139 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021072 B = 0.004757 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.475904 B = 5884.379496 C = 6370.543347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.081 4.081 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.092 4.092 8 C 0.502 3.498 9 O -0.590 6.590 10 N -0.613 5.613 11 C 0.076 3.924 12 C 0.260 3.740 13 C -0.541 4.541 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.281 1.281 20 H -0.273 1.273 21 C -0.083 4.083 22 C -0.115 4.115 23 C -0.142 4.142 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.138 0.862 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.023 0.977 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.508 1.779 -17.977 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.081 4.081 5 C -0.169 4.169 6 C -0.091 4.091 7 C -0.131 4.131 8 C 0.291 3.709 9 O -0.471 6.471 10 N -0.345 5.345 11 C -0.066 4.066 12 C 0.139 3.861 13 C -0.580 4.580 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.083 4.083 22 C -0.172 4.172 23 C -0.160 4.160 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.156 0.844 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.041 0.959 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.810 1.832 -17.329 20.506 hybrid contribution 0.430 -0.713 1.107 1.386 sum -10.380 1.119 -16.221 19.291 Atomic orbital electron populations 1.20794 0.89107 1.03297 1.03227 1.20226 0.97564 0.92748 0.98557 1.21095 0.93157 0.98512 1.03116 1.19993 0.94503 0.95161 0.98411 1.20827 0.99327 0.93520 1.03256 1.19226 0.94063 0.93149 1.02615 1.20762 0.92968 1.06532 0.92819 1.21119 0.81854 0.76004 0.91950 1.90650 1.56117 1.51802 1.48506 1.48196 1.06144 1.71660 1.08488 1.21959 0.93314 1.02684 0.88645 1.18717 0.93030 0.95965 0.78390 1.21703 1.44234 0.93038 0.98997 0.92887 1.25862 0.94849 1.01961 0.96496 1.70056 1.45765 1.33047 1.08054 0.85427 0.79005 0.79116 0.77347 1.18593 1.20682 1.19812 1.19966 0.94558 0.95123 0.98615 1.20854 1.00598 0.94181 1.01544 1.21075 0.93111 0.98577 1.03221 0.89687 0.91152 0.90936 0.84443 0.88553 0.90954 0.93336 0.85924 0.86272 0.91024 0.91499 0.88795 0.95915 0.98782 0.92431 0.93512 0.89363 0.90559 0.84778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.01 71.24 0.71 -1.18 16 2 C -0.09 -2.31 5.88 -19.87 -0.12 -2.42 16 3 C -0.14 -3.73 9.36 22.27 0.21 -3.52 16 4 C -0.08 -2.37 5.88 -19.87 -0.12 -2.49 16 5 C -0.11 -2.79 9.19 71.23 0.65 -2.13 16 6 C -0.09 -2.86 4.37 -19.87 -0.09 -2.95 16 7 C -0.09 -2.74 3.30 29.10 0.10 -2.65 16 8 C 0.50 21.51 7.26 87.66 0.64 22.15 16 9 O -0.59 -32.03 15.61 -3.03 -0.05 -32.08 16 10 N -0.61 -26.54 2.86 -851.14 -2.43 -28.97 16 11 C 0.08 2.26 10.24 127.77 1.31 3.57 16 12 C 0.26 14.43 5.16 85.64 0.44 14.87 16 13 C -0.54 -31.84 9.39 25.60 0.24 -31.59 16 14 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 17 Si 0.97 45.61 29.54 68.60 2.03 47.64 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 21 C -0.08 -2.54 5.88 -19.87 -0.12 -2.66 16 22 C -0.12 -3.19 9.60 71.24 0.68 -2.51 16 23 C -0.14 -3.90 9.36 22.27 0.21 -3.69 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 26 H 0.07 1.15 8.09 -2.39 -0.02 1.13 16 27 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 30 H 0.05 1.38 6.36 -2.39 -0.02 1.37 16 31 H 0.12 2.91 6.67 -2.39 -0.02 2.89 16 32 H 0.12 2.98 5.20 -2.39 -0.01 2.97 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 35 H 0.09 2.08 6.44 -2.39 -0.02 2.07 16 36 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 37 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.90 8.09 -2.38 -0.02 1.88 16 41 H 0.08 1.89 5.94 -2.38 -0.01 1.87 16 42 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -78.21 344.29 6.05 -72.17 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.00 Total: 14.55 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: 5.22 Total: -16.33 kcal Atomic # 7 Polarization: -83.80 SS G_CDS: -2.15 Total: -85.94 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.05 Total: -32.08 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -78.21 6.05 -72.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271399875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.871 kcal (2) G-P(sol) polarization free energy of solvation -78.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds