Wall clock time and date at job start Mon Mar 30 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47260 * 240.00743 * 3 2 1 5 5 H 1.48504 * 109.46841 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47073 * 120.00103 * 3 2 1 7 7 C 1.37873 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47233 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47351 * 180.02562 * 10 9 7 12 12 C 1.48562 * 110.99842 * 290.12526 * 11 10 9 13 13 C 1.54379 * 104.59486 * 200.96032 * 12 11 10 14 14 C 1.54266 * 105.05973 * 23.85004 * 13 12 11 15 15 H 1.09003 * 110.32265 * 241.10234 * 14 13 12 16 16 C 1.53006 * 110.31977 * 118.89985 * 14 13 12 17 17 O 1.42898 * 109.47440 * 66.45552 * 16 14 13 18 18 C 1.35896 * 117.00057 * 179.97438 * 17 16 14 19 19 C 1.38736 * 120.05213 * 359.72484 * 18 17 16 20 20 C 1.38147 * 119.93763 * 179.74352 * 19 18 17 21 21 C 1.38264 * 120.06027 * 0.50818 * 20 19 18 22 22 C 1.38272 * 120.10610 * 359.76520 * 21 20 19 23 23 C 1.38132 * 120.05791 * 359.97438 * 22 21 20 24 24 C 1.48562 * 111.00142 * 174.70363 * 11 10 9 25 25 H 0.96999 * 120.00333 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47198 * 60.00520 * 9 7 2 27 27 H 1.09002 * 109.47280 * 300.00051 * 9 7 2 28 28 H 1.08998 * 109.47414 * 59.99622 * 10 9 7 29 29 H 1.09002 * 109.46654 * 299.99976 * 10 9 7 30 30 H 1.08998 * 110.41528 * 82.17831 * 12 11 10 31 31 H 1.08997 * 110.50874 * 319.78619 * 12 11 10 32 32 H 1.08996 * 110.32596 * 264.95760 * 13 12 11 33 33 H 1.09000 * 110.41377 * 142.79352 * 13 12 11 34 34 H 1.09004 * 109.46382 * 186.45392 * 16 14 13 35 35 H 1.09002 * 109.46740 * 306.44819 * 16 14 13 36 36 H 1.07992 * 120.03016 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.97017 * 180.23318 * 20 19 18 38 38 H 1.08000 * 119.94518 * 179.74590 * 21 20 19 39 39 H 1.08001 * 119.96563 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.02591 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.41111 * 40.26361 * 24 11 10 42 42 H 1.08989 * 110.41482 * 277.81625 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.8309 -5.1570 1.3008 13 6 0.5853 -6.6802 1.3558 14 6 1.6443 -7.2911 0.4150 15 1 1.1609 -7.8259 -0.4027 16 6 2.5678 -8.2306 1.1933 17 8 1.8232 -9.3628 1.6467 18 6 2.5000 -10.3012 2.3594 19 6 3.8544 -10.1384 2.6123 20 6 4.5390 -11.0912 3.3416 21 6 3.8780 -12.2114 3.8105 22 6 2.5294 -12.3787 3.5549 23 6 1.8392 -11.4263 2.8307 24 6 2.4407 -6.0858 -0.1292 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6042 -0.8906 30 1 -0.1159 -4.6179 1.3325 31 1 1.4726 -4.8455 2.1250 32 1 -0.4177 -6.9150 0.9998 33 1 0.7223 -7.0510 2.3716 34 1 3.3773 -8.5643 0.5441 35 1 2.9842 -7.7023 2.0510 36 1 4.3722 -9.2658 2.2425 37 1 5.5926 -10.9631 3.5420 38 1 4.4160 -12.9572 4.3770 39 1 2.0154 -13.2548 3.9219 40 1 0.7857 -11.5572 2.6318 41 1 3.3360 -5.9199 0.4700 42 1 2.7058 -6.2459 -1.1741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272506636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:44 Heat of formation + Delta-G solvation = -20.173007 kcal Electronic energy + Delta-G solvation = -20310.182055 eV Core-core repulsion = 17254.833519 eV Total energy + Delta-G solvation = -3055.348536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.38530 -38.82045 -37.39213 -33.92520 -32.33905 -31.27202 -30.22258 -29.23223 -28.76218 -25.76512 -24.10573 -22.79221 -22.20640 -21.61685 -20.32768 -19.44501 -18.40588 -16.67316 -16.44313 -16.18214 -15.89011 -15.16157 -14.93788 -14.53382 -14.44973 -13.91783 -13.71046 -13.61834 -13.13173 -12.75708 -12.56698 -12.17117 -11.91870 -11.83135 -11.66456 -11.52347 -11.11675 -11.04568 -10.99149 -10.81725 -10.60202 -10.53452 -10.37454 -9.82767 -9.38541 -9.27568 -9.14369 -8.43256 -8.33715 -7.93245 -5.99217 -4.02073 1.06963 1.19938 2.96250 3.33206 3.37671 3.39815 3.53695 4.35819 4.47900 4.57339 4.62898 4.68401 4.83986 4.86141 4.90728 5.10459 5.12911 5.23843 5.27670 5.36415 5.41255 5.43729 5.53550 5.73425 5.77576 5.93148 6.00139 6.06002 6.12737 6.14483 6.18409 6.26251 6.34229 6.42511 6.48669 6.53015 6.93427 7.22559 7.35425 7.45336 7.74604 7.88263 8.07578 8.42829 9.04931 9.61487 11.12101 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043062 B = 0.002614 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.071964 B =10707.694966 C =10981.169040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.030 3.970 10 C 0.052 3.948 11 N -0.508 5.508 12 C 0.034 3.966 13 C -0.116 4.116 14 C -0.090 4.090 15 H 0.089 0.911 16 C 0.068 3.932 17 O -0.310 6.310 18 C 0.135 3.865 19 C -0.211 4.211 20 C -0.080 4.080 21 C -0.164 4.164 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.039 3.961 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.016 0.984 28 H 0.022 0.978 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.040 0.960 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.328 -23.898 6.055 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.075 4.075 11 N -0.232 5.232 12 C -0.094 4.094 13 C -0.154 4.154 14 C -0.109 4.109 15 H 0.107 0.893 16 C -0.007 4.007 17 O -0.224 6.224 18 C 0.089 3.911 19 C -0.230 4.230 20 C -0.099 4.099 21 C -0.183 4.183 22 C -0.100 4.100 23 C -0.174 4.174 24 C -0.089 4.089 25 H 0.071 0.929 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.058 0.942 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.593 -23.705 5.537 24.977 hybrid contribution 1.367 1.090 0.702 1.884 sum 6.960 -22.614 6.239 24.470 Atomic orbital electron populations 1.69961 1.06017 1.26702 1.50494 1.24996 0.94843 0.99175 0.95301 0.86653 0.79571 0.83150 0.78572 1.20219 1.21255 1.20318 1.21152 0.92908 0.91093 1.51087 0.92883 1.19040 0.93903 0.89979 0.97849 1.22509 0.96980 0.88931 0.99067 1.65496 1.25112 1.01981 1.30628 1.23102 1.00368 0.94931 0.90965 1.22350 0.99116 0.95059 0.98846 1.21914 0.96164 0.94663 0.98188 0.89275 1.22970 0.94601 0.85141 0.98010 1.86087 1.38475 1.30851 1.66962 1.19089 0.90677 0.89477 0.91883 1.21328 0.93903 1.02306 1.05450 1.20967 0.99704 0.93377 0.95807 1.21054 0.94985 0.98873 1.03356 1.20969 0.94311 0.98082 0.96643 1.20477 1.00833 0.93555 1.02535 1.23033 0.94560 0.90509 1.00847 0.92921 0.95695 0.96574 0.95959 0.92011 0.89650 0.94165 0.90891 0.91508 0.91927 0.91909 0.85449 0.85889 0.86051 0.85479 0.85201 0.94188 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.03 0.78 5.03 -27.88 -0.14 0.64 16 10 C 0.05 1.11 4.75 -3.83 -0.02 1.09 16 11 N -0.51 -9.32 5.37 -229.98 -1.24 -10.56 16 12 C 0.03 0.58 5.73 -2.18 -0.01 0.57 16 13 C -0.12 -1.57 6.50 -25.35 -0.16 -1.74 16 14 C -0.09 -1.13 3.35 -89.23 -0.30 -1.43 16 15 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 16 C 0.07 0.74 3.81 37.16 0.14 0.88 16 17 O -0.31 -3.75 9.92 -19.41 -0.19 -3.94 16 18 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 19 C -0.21 -2.12 9.04 -39.43 -0.36 -2.47 16 20 C -0.08 -0.70 10.04 -39.60 -0.40 -1.10 16 21 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 22 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 23 C -0.16 -1.55 9.99 -39.44 -0.39 -1.94 16 24 C 0.04 0.56 6.03 -2.18 -0.01 0.54 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.44 7.26 -51.93 -0.38 0.07 16 28 H 0.02 0.47 7.89 -51.93 -0.41 0.06 16 29 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.09 1.56 7.76 -51.93 -0.40 1.15 16 31 H 0.04 0.68 7.83 -51.93 -0.41 0.28 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.86 7.66 -51.93 -0.40 0.46 16 34 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 35 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 41 H 0.04 0.54 7.72 -51.93 -0.40 0.14 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -31.12 341.74 -10.55 -41.67 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.87 Total: -2.55 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -3.12 Total: -20.17 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: -0.50 Total: -36.88 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.19 Total: -3.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.12 -10.55 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272506636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.497 kcal (2) G-P(sol) polarization free energy of solvation -31.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds