Wall clock time and date at job start Mon Mar 30 2020 01:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00046 * 2 1 4 4 H 1.48503 * 109.47260 * 240.00743 * 3 2 1 5 5 H 1.48504 * 109.46841 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47073 * 120.00103 * 3 2 1 7 7 C 1.37873 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47233 * 180.02562 * 9 7 2 11 11 N 1.46895 * 109.47351 * 180.02562 * 10 9 7 12 12 C 1.48562 * 110.99842 * 290.12526 * 11 10 9 13 13 C 1.54379 * 104.59486 * 200.96032 * 12 11 10 14 14 C 1.54266 * 105.05973 * 23.85004 * 13 12 11 15 15 H 1.09003 * 110.32265 * 241.10234 * 14 13 12 16 16 C 1.53006 * 110.31977 * 118.89985 * 14 13 12 17 17 O 1.42898 * 109.47440 * 66.45552 * 16 14 13 18 18 C 1.35896 * 117.00057 * 179.97438 * 17 16 14 19 19 C 1.38736 * 120.05213 * 359.72484 * 18 17 16 20 20 C 1.38147 * 119.93763 * 179.74352 * 19 18 17 21 21 C 1.38264 * 120.06027 * 0.50818 * 20 19 18 22 22 C 1.38272 * 120.10610 * 359.76520 * 21 20 19 23 23 C 1.38132 * 120.05791 * 359.97438 * 22 21 20 24 24 C 1.48562 * 111.00142 * 174.70363 * 11 10 9 25 25 H 0.96999 * 120.00333 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47198 * 60.00520 * 9 7 2 27 27 H 1.09002 * 109.47280 * 300.00051 * 9 7 2 28 28 H 1.08998 * 109.47414 * 59.99622 * 10 9 7 29 29 H 1.09002 * 109.46654 * 299.99976 * 10 9 7 30 30 H 1.08998 * 110.41528 * 82.17831 * 12 11 10 31 31 H 1.08997 * 110.50874 * 319.78619 * 12 11 10 32 32 H 1.08996 * 110.32596 * 264.95760 * 13 12 11 33 33 H 1.09000 * 110.41377 * 142.79352 * 13 12 11 34 34 H 1.09004 * 109.46382 * 186.45392 * 16 14 13 35 35 H 1.09002 * 109.46740 * 306.44819 * 16 14 13 36 36 H 1.07992 * 120.03016 * 359.97438 * 19 18 17 37 37 H 1.08005 * 119.97017 * 180.23318 * 20 19 18 38 38 H 1.08000 * 119.94518 * 179.74590 * 21 20 19 39 39 H 1.08001 * 119.96563 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.02591 * 180.02562 * 23 22 21 41 41 H 1.09000 * 110.41111 * 40.26361 * 24 11 10 42 42 H 1.08989 * 110.41482 * 277.81625 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5108 -4.9342 -0.0012 12 6 0.8309 -5.1570 1.3008 13 6 0.5853 -6.6802 1.3558 14 6 1.6443 -7.2911 0.4150 15 1 1.1609 -7.8259 -0.4027 16 6 2.5678 -8.2306 1.1933 17 8 1.8232 -9.3628 1.6467 18 6 2.5000 -10.3012 2.3594 19 6 3.8544 -10.1384 2.6123 20 6 4.5390 -11.0912 3.3416 21 6 3.8780 -12.2114 3.8105 22 6 2.5294 -12.3787 3.5549 23 6 1.8392 -11.4263 2.8307 24 6 2.4407 -6.0858 -0.1292 25 1 -0.4850 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8720 -3.6043 0.8894 29 1 2.8719 -3.6042 -0.8906 30 1 -0.1159 -4.6179 1.3325 31 1 1.4726 -4.8455 2.1250 32 1 -0.4177 -6.9150 0.9998 33 1 0.7223 -7.0510 2.3716 34 1 3.3773 -8.5643 0.5441 35 1 2.9842 -7.7023 2.0510 36 1 4.3722 -9.2658 2.2425 37 1 5.5926 -10.9631 3.5420 38 1 4.4160 -12.9572 4.3770 39 1 2.0154 -13.2548 3.9219 40 1 0.7857 -11.5572 2.6318 41 1 3.3360 -5.9199 0.4700 42 1 2.7058 -6.2459 -1.1741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272506636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:44 Heat of formation + Delta-G solvation = -38.370030 kcal Electronic energy + Delta-G solvation = -20310.971137 eV Core-core repulsion = 17254.833519 eV Total energy + Delta-G solvation = -3056.137618 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18444 -39.98905 -38.22998 -35.74808 -34.05140 -31.99172 -31.31592 -30.32931 -30.26607 -27.11286 -25.70906 -23.56108 -23.33107 -22.86162 -21.71383 -20.73472 -19.15690 -18.56700 -17.61233 -16.93045 -16.77858 -16.56467 -16.30029 -16.02639 -15.47610 -15.22376 -14.87656 -14.38171 -14.29949 -14.03883 -13.83186 -13.73072 -13.30421 -13.13166 -12.84212 -12.68368 -12.50910 -12.41975 -12.40124 -12.13956 -11.86156 -11.75261 -11.54469 -11.45458 -11.32097 -11.25311 -10.55736 -9.93626 -9.39714 -9.15075 -8.20742 -6.32857 0.40970 0.51279 1.39532 1.43100 1.51020 2.14011 2.39958 2.86825 3.12366 3.14943 3.64020 3.66373 3.80933 3.94942 4.01551 4.21011 4.26062 4.26593 4.33533 4.39459 4.45142 4.52578 4.57286 4.59130 4.64530 4.71006 4.78556 4.90673 5.02856 5.05961 5.10559 5.15833 5.24464 5.38980 5.43690 5.50331 5.60400 5.62169 5.76830 5.88742 5.98126 6.11132 6.28775 6.46919 6.84215 7.36411 8.91293 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.043062 B = 0.002614 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.071964 B =10707.694966 C =10981.169040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.037 3.963 10 C 0.070 3.930 11 N -0.528 5.528 12 C 0.033 3.967 13 C -0.106 4.106 14 C -0.081 4.081 15 H 0.093 0.907 16 C 0.074 3.926 17 O -0.326 6.326 18 C 0.109 3.891 19 C -0.223 4.223 20 C -0.088 4.088 21 C -0.166 4.166 22 C -0.084 4.084 23 C -0.171 4.171 24 C 0.040 3.960 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.010 1.010 28 H 0.025 0.975 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.065 0.935 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.152 0.848 40 H 0.133 0.867 41 H 0.052 0.948 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.389 -25.164 6.612 27.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.080 0.920 9 C 0.000 4.000 10 C -0.058 4.058 11 N -0.252 5.252 12 C -0.095 4.095 13 C -0.144 4.144 14 C -0.100 4.100 15 H 0.111 0.889 16 C -0.001 4.001 17 O -0.240 6.240 18 C 0.064 3.936 19 C -0.241 4.241 20 C -0.106 4.106 21 C -0.184 4.184 22 C -0.102 4.102 23 C -0.190 4.190 24 C -0.087 4.087 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.008 0.992 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.152 0.848 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.151 0.849 41 H 0.070 0.930 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.665 -24.998 6.096 26.848 hybrid contribution 0.694 1.393 0.560 1.654 sum 8.359 -23.604 6.656 25.910 Atomic orbital electron populations 1.70110 1.07898 1.27883 1.51317 1.26006 0.95777 1.03467 0.94597 0.85458 0.78224 0.77845 0.79249 1.19009 1.20847 1.19102 1.21601 0.93558 0.92220 1.51072 0.92013 1.18868 0.94193 0.92077 0.94889 1.22130 0.95527 0.88788 0.99369 1.65380 1.26210 1.02084 1.31495 1.23073 0.98977 0.97107 0.90342 1.22273 0.99750 0.92472 0.99930 1.21801 0.95768 0.94291 0.98138 0.88852 1.22870 0.94264 0.84835 0.98167 1.86035 1.39145 1.31267 1.67566 1.19348 0.91438 0.89896 0.92949 1.21511 0.93639 1.03066 1.05930 1.21305 1.00825 0.93196 0.95261 1.21435 0.95063 0.99096 1.02788 1.21312 0.94663 0.98376 0.95834 1.20718 1.01310 0.93850 1.03119 1.23095 0.94315 0.89272 1.02045 0.92738 0.99101 0.99154 0.95646 0.91521 0.92187 0.94470 0.90784 0.90452 0.90305 0.91688 0.84806 0.83836 0.83595 0.83049 0.84945 0.93000 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.63 9.11 25.60 0.23 -31.39 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.04 2.04 5.03 29.85 0.15 2.19 16 10 C 0.07 3.00 4.75 86.30 0.41 3.41 16 11 N -0.53 -19.47 5.37 -881.52 -4.73 -24.21 16 12 C 0.03 1.14 5.73 86.45 0.50 1.64 16 13 C -0.11 -2.85 6.50 31.49 0.20 -2.64 16 14 C -0.08 -1.91 3.35 -9.89 -0.03 -1.95 16 15 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 16 C 0.07 1.49 3.81 71.98 0.27 1.76 16 17 O -0.33 -7.54 9.92 -92.38 -0.92 -8.46 16 18 C 0.11 2.33 6.69 22.51 0.15 2.48 16 19 C -0.22 -4.12 9.04 22.37 0.20 -3.92 16 20 C -0.09 -1.33 10.04 22.25 0.22 -1.11 16 21 C -0.17 -2.26 10.04 22.28 0.22 -2.03 16 22 C -0.08 -1.22 10.04 22.25 0.22 -1.00 16 23 C -0.17 -3.23 9.99 22.36 0.22 -3.00 16 24 C 0.04 1.10 6.03 86.45 0.52 1.62 16 25 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 26 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 27 H -0.01 -0.59 7.26 -2.39 -0.02 -0.60 16 28 H 0.03 1.07 7.89 -2.39 -0.02 1.05 16 29 H 0.07 2.77 8.13 -2.39 -0.02 2.75 16 30 H 0.06 2.33 7.76 -2.39 -0.02 2.31 16 31 H 0.04 1.29 7.83 -2.39 -0.02 1.27 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.08 1.92 7.66 -2.39 -0.02 1.90 16 34 H 0.08 1.34 7.65 -2.38 -0.02 1.32 16 35 H 0.06 1.28 7.68 -2.39 -0.02 1.26 16 36 H 0.13 2.17 6.30 -2.91 -0.02 2.15 16 37 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 39 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 40 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.05 1.31 7.72 -2.39 -0.02 1.29 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -68.10 341.74 1.60 -66.50 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.97 Total: 10.65 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.96 Total: -33.51 kcal Atomic # 7 Polarization: -77.35 SS G_CDS: -4.45 Total: -81.80 kcal Atomic # 8 Polarization: -7.54 SS G_CDS: -0.92 Total: -8.46 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -68.10 1.60 -66.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272506636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.129 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds