Wall clock time and date at job start Mon Mar 30 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47062 * 240.00174 * 3 2 1 5 5 H 1.48500 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47333 * 119.99545 * 3 2 1 7 7 C 1.37879 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47240 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46914 * 179.97438 * 10 9 7 12 12 C 1.48064 * 111.16437 * 52.60365 * 11 10 9 13 13 C 1.53988 * 107.14543 * 145.63064 * 12 11 10 14 14 C 1.54593 * 105.13853 * 358.91767 * 13 12 11 15 15 H 1.09001 * 110.73014 * 96.40304 * 14 13 12 16 16 C 1.53004 * 110.87647 * 219.61371 * 14 13 12 17 17 O 1.42901 * 109.46864 * 288.58834 * 16 14 13 18 18 C 1.35911 * 116.99674 * 180.02562 * 17 16 14 19 19 C 1.38725 * 120.05658 * 359.72580 * 18 17 16 20 20 C 1.38143 * 119.94807 * 179.74255 * 19 18 17 21 21 C 1.38268 * 120.04872 * 0.51345 * 20 19 18 22 22 C 1.38262 * 120.11688 * 359.76241 * 21 20 19 23 23 C 1.38152 * 120.04981 * 359.97438 * 22 21 20 24 24 C 1.48537 * 110.99943 * 169.99682 * 11 10 9 25 25 H 0.97006 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47722 * 59.99706 * 9 7 2 27 27 H 1.09003 * 109.46787 * 299.99740 * 9 7 2 28 28 H 1.08995 * 109.47330 * 59.99911 * 10 9 7 29 29 H 1.08994 * 109.46826 * 299.99285 * 10 9 7 30 30 H 1.09006 * 109.75798 * 26.31855 * 12 11 10 31 31 H 1.08998 * 110.16226 * 265.17346 * 12 11 10 32 32 H 1.09005 * 110.31083 * 240.00088 * 13 12 11 33 33 H 1.08999 * 110.39531 * 117.87480 * 13 12 11 34 34 H 1.08992 * 109.47234 * 48.59022 * 16 14 13 35 35 H 1.09001 * 109.47228 * 168.59184 * 16 14 13 36 36 H 1.08006 * 120.02753 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.97802 * 180.27675 * 20 19 18 38 38 H 1.07996 * 119.94445 * 179.74610 * 21 20 19 39 39 H 1.07996 * 119.97795 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.02574 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.66696 * 81.84409 * 24 11 10 42 42 H 1.09001 * 110.66368 * 318.88248 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0024 12 6 0.5175 -4.9787 -1.0949 13 6 0.4489 -6.4364 -1.5863 14 6 1.4780 -7.2022 -0.7235 15 1 0.9887 -7.6864 0.1217 16 6 2.2399 -8.2277 -1.5655 17 8 1.3689 -9.3095 -1.9016 18 6 1.8935 -10.3136 -2.6524 19 6 3.2177 -10.2559 -3.0620 20 6 3.7502 -11.2803 -3.8206 21 6 2.9614 -12.3574 -4.1806 22 6 1.6398 -12.4145 -3.7785 23 6 1.1042 -11.3952 -3.0152 24 6 2.4271 -6.0783 -0.2372 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8711 -3.6040 0.8922 29 1 2.8724 -3.6048 -0.8877 30 1 0.8377 -4.3274 -1.9082 31 1 -0.4600 -4.6634 -0.7300 32 1 0.7215 -6.4937 -2.6402 33 1 -0.5508 -6.8426 -1.4322 34 1 2.5991 -7.7532 -2.4786 35 1 3.0879 -8.6076 -0.9957 36 1 3.8329 -9.4126 -2.7848 37 1 4.7822 -11.2380 -4.1359 38 1 3.3783 -13.1553 -4.7771 39 1 1.0256 -13.2566 -4.0613 40 1 0.0717 -11.4400 -2.7017 41 1 2.9277 -6.3701 0.6861 42 1 3.1574 -5.8312 -1.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272506641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:48 Heat of formation + Delta-G solvation = -19.733740 kcal Electronic energy + Delta-G solvation = -20293.221861 eV Core-core repulsion = 17237.892374 eV Total energy + Delta-G solvation = -3055.329488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.36357 -38.80810 -37.41233 -33.94714 -32.33569 -31.26871 -30.22065 -29.20633 -28.80103 -25.73308 -24.05859 -22.79897 -22.19423 -21.72401 -20.41694 -19.21274 -18.41331 -16.67789 -16.41698 -16.17416 -15.89021 -15.28600 -14.91687 -14.52224 -14.48585 -13.76939 -13.66990 -13.55210 -13.18040 -12.89748 -12.65165 -12.22135 -11.90822 -11.81649 -11.62059 -11.44182 -11.06288 -11.01096 -10.97018 -10.81919 -10.60276 -10.55400 -10.36450 -9.93113 -9.35981 -9.27299 -9.15400 -8.42909 -8.36203 -7.83297 -6.00622 -4.03365 1.07160 1.20251 2.96971 3.32671 3.37117 3.39349 3.53944 4.34760 4.47009 4.56469 4.61645 4.70124 4.85538 4.86919 4.91188 5.09622 5.12611 5.26736 5.29069 5.35164 5.42057 5.44232 5.55669 5.73713 5.78100 5.95114 6.00530 6.06286 6.13491 6.14943 6.26022 6.26436 6.35172 6.43115 6.52837 6.56034 6.90520 7.23285 7.44070 7.45608 7.71862 7.85426 8.04968 8.41470 9.03311 9.60265 11.10714 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.046445 B = 0.002578 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.714385 B =10857.484442 C =11087.274757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.024 3.976 10 C 0.054 3.946 11 N -0.517 5.517 12 C 0.039 3.961 13 C -0.122 4.122 14 C -0.090 4.090 15 H 0.093 0.907 16 C 0.070 3.930 17 O -0.310 6.310 18 C 0.135 3.865 19 C -0.211 4.211 20 C -0.081 4.081 21 C -0.165 4.165 22 C -0.082 4.082 23 C -0.155 4.155 24 C 0.043 3.957 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.064 0.936 29 H 0.021 0.979 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.880 -23.802 -7.059 25.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.073 4.073 11 N -0.241 5.241 12 C -0.089 4.089 13 C -0.161 4.161 14 C -0.109 4.109 15 H 0.111 0.889 16 C -0.006 4.006 17 O -0.224 6.224 18 C 0.089 3.911 19 C -0.230 4.230 20 C -0.099 4.099 21 C -0.183 4.183 22 C -0.100 4.100 23 C -0.174 4.174 24 C -0.086 4.086 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.098 0.902 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.276 -23.654 -6.461 24.890 hybrid contribution 1.152 1.181 -0.856 1.859 sum 5.428 -22.472 -7.317 24.249 Atomic orbital electron populations 1.69960 1.06029 1.26729 1.50490 1.25000 0.94851 0.99208 0.95271 0.86642 0.79567 0.83097 0.78592 1.20312 1.21257 1.20194 1.21142 0.92937 0.91035 1.51097 0.92825 1.19159 0.94001 0.90320 0.97878 1.22503 0.97083 0.88606 0.99118 1.64871 1.13128 1.03317 1.42784 1.22837 0.98022 0.94772 0.93223 1.22478 0.99528 0.95361 0.98691 1.22087 0.96764 0.93866 0.98222 0.88873 1.22901 0.92691 0.86089 0.98896 1.86099 1.40198 1.29871 1.66209 1.19090 0.91980 0.88655 0.91396 1.21325 0.95098 1.01830 1.04739 1.20963 0.99630 0.93152 0.96121 1.21051 0.94558 0.99388 1.03282 1.20971 0.95308 0.97582 0.96144 1.20484 1.00493 0.93613 1.02813 1.23142 0.94530 0.91057 0.99828 0.92909 0.96331 0.95724 0.91797 0.96035 0.93299 0.90158 0.91871 0.90951 0.91902 0.91847 0.85433 0.85891 0.86061 0.85480 0.85200 0.90182 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.90 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.62 4.72 -27.88 -0.13 0.49 16 10 C 0.05 1.15 4.94 -3.82 -0.02 1.13 16 11 N -0.52 -9.51 5.40 -230.31 -1.24 -10.75 16 12 C 0.04 0.68 5.35 -2.67 -0.01 0.67 16 13 C -0.12 -1.69 6.46 -25.38 -0.16 -1.85 16 14 C -0.09 -1.14 3.31 -88.76 -0.29 -1.44 16 15 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.07 0.76 4.09 37.16 0.15 0.91 16 17 O -0.31 -3.78 10.08 -19.46 -0.20 -3.97 16 18 C 0.13 1.51 6.69 -39.22 -0.26 1.25 16 19 C -0.21 -2.10 9.04 -39.44 -0.36 -2.46 16 20 C -0.08 -0.70 10.04 -39.61 -0.40 -1.09 16 21 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 22 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 23 C -0.16 -1.55 9.99 -39.43 -0.39 -1.95 16 24 C 0.04 0.61 5.99 -1.90 -0.01 0.60 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.02 0.51 6.64 -51.93 -0.34 0.16 16 27 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.02 0.45 7.89 -51.93 -0.41 0.04 16 30 H 0.05 0.91 7.14 -51.93 -0.37 0.54 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.06 0.83 7.73 -51.93 -0.40 0.42 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.66 7.47 -51.93 -0.39 0.27 16 35 H 0.06 0.60 7.67 -51.93 -0.40 0.21 16 36 H 0.13 1.12 6.30 -52.48 -0.33 0.79 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.04 0.58 7.76 -51.93 -0.40 0.17 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -31.00 340.61 -10.51 -41.51 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.82 Total: -2.20 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: -3.10 Total: -20.18 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.51 Total: -36.99 kcal Atomic # 8 Polarization: -3.78 SS G_CDS: -0.20 Total: -3.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.00 -10.51 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272506641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.776 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds