Wall clock time and date at job start Mon Mar 30 2020 01:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00510 * 2 1 4 4 H 1.48495 * 109.47062 * 240.00174 * 3 2 1 5 5 H 1.48500 * 109.46780 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47333 * 119.99545 * 3 2 1 7 7 C 1.37879 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00259 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47240 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46914 * 179.97438 * 10 9 7 12 12 C 1.48064 * 111.16437 * 52.60365 * 11 10 9 13 13 C 1.53988 * 107.14543 * 145.63064 * 12 11 10 14 14 C 1.54593 * 105.13853 * 358.91767 * 13 12 11 15 15 H 1.09001 * 110.73014 * 96.40304 * 14 13 12 16 16 C 1.53004 * 110.87647 * 219.61371 * 14 13 12 17 17 O 1.42901 * 109.46864 * 288.58834 * 16 14 13 18 18 C 1.35911 * 116.99674 * 180.02562 * 17 16 14 19 19 C 1.38725 * 120.05658 * 359.72580 * 18 17 16 20 20 C 1.38143 * 119.94807 * 179.74255 * 19 18 17 21 21 C 1.38268 * 120.04872 * 0.51345 * 20 19 18 22 22 C 1.38262 * 120.11688 * 359.76241 * 21 20 19 23 23 C 1.38152 * 120.04981 * 359.97438 * 22 21 20 24 24 C 1.48537 * 110.99943 * 169.99682 * 11 10 9 25 25 H 0.97006 * 119.99710 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47722 * 59.99706 * 9 7 2 27 27 H 1.09003 * 109.46787 * 299.99740 * 9 7 2 28 28 H 1.08995 * 109.47330 * 59.99911 * 10 9 7 29 29 H 1.08994 * 109.46826 * 299.99285 * 10 9 7 30 30 H 1.09006 * 109.75798 * 26.31855 * 12 11 10 31 31 H 1.08998 * 110.16226 * 265.17346 * 12 11 10 32 32 H 1.09005 * 110.31083 * 240.00088 * 13 12 11 33 33 H 1.08999 * 110.39531 * 117.87480 * 13 12 11 34 34 H 1.08992 * 109.47234 * 48.59022 * 16 14 13 35 35 H 1.09001 * 109.47228 * 168.59184 * 16 14 13 36 36 H 1.08006 * 120.02753 * 359.97438 * 19 18 17 37 37 H 1.07993 * 119.97802 * 180.27675 * 20 19 18 38 38 H 1.07996 * 119.94445 * 179.74610 * 21 20 19 39 39 H 1.07996 * 119.97795 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.02574 * 179.97438 * 23 22 21 41 41 H 1.09002 * 110.66696 * 81.84409 * 24 11 10 42 42 H 1.09001 * 110.66368 * 318.88248 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 7 1.5106 -4.9343 0.0024 12 6 0.5175 -4.9787 -1.0949 13 6 0.4489 -6.4364 -1.5863 14 6 1.4780 -7.2022 -0.7235 15 1 0.9887 -7.6864 0.1217 16 6 2.2399 -8.2277 -1.5655 17 8 1.3689 -9.3095 -1.9016 18 6 1.8935 -10.3136 -2.6524 19 6 3.2177 -10.2559 -3.0620 20 6 3.7502 -11.2803 -3.8206 21 6 2.9614 -12.3574 -4.1806 22 6 1.6398 -12.4145 -3.7785 23 6 1.1042 -11.3952 -3.0152 24 6 2.4271 -6.0783 -0.2372 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 2.8711 -3.6040 0.8922 29 1 2.8724 -3.6048 -0.8877 30 1 0.8377 -4.3274 -1.9082 31 1 -0.4600 -4.6634 -0.7300 32 1 0.7215 -6.4937 -2.6402 33 1 -0.5508 -6.8426 -1.4322 34 1 2.5991 -7.7532 -2.4786 35 1 3.0879 -8.6076 -0.9957 36 1 3.8329 -9.4126 -2.7848 37 1 4.7822 -11.2380 -4.1359 38 1 3.3783 -13.1553 -4.7771 39 1 1.0256 -13.2566 -4.0613 40 1 0.0717 -11.4400 -2.7017 41 1 2.9277 -6.3701 0.6861 42 1 3.1574 -5.8312 -1.0077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272506641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:47 Heat of formation + Delta-G solvation = -37.937718 kcal Electronic energy + Delta-G solvation = -20294.011245 eV Core-core repulsion = 17237.892374 eV Total energy + Delta-G solvation = -3056.118871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.15921 -40.01294 -38.24479 -35.75540 -34.06047 -31.98470 -31.28647 -30.39947 -30.25349 -27.11563 -25.64036 -23.58552 -23.46090 -22.84833 -21.65737 -20.64489 -19.16615 -18.57212 -17.62208 -16.93789 -16.77198 -16.55471 -16.38979 -16.11183 -15.29717 -15.14723 -14.93310 -14.39599 -14.29727 -14.12115 -13.91201 -13.79105 -13.26253 -13.05584 -12.86058 -12.66682 -12.47964 -12.41773 -12.37754 -12.10528 -11.89820 -11.80260 -11.56067 -11.49321 -11.29844 -11.26198 -10.57068 -9.93092 -9.32820 -9.14628 -8.21655 -6.33601 0.41442 0.51781 1.39236 1.42740 1.50668 2.14665 2.39523 2.87292 3.11293 3.12029 3.62541 3.66051 3.82103 3.94598 4.01444 4.21721 4.25602 4.28068 4.34010 4.40645 4.47662 4.53103 4.56312 4.59714 4.64693 4.73208 4.78374 4.89258 5.00569 5.04600 5.11023 5.12755 5.26234 5.39458 5.42689 5.50764 5.61354 5.62602 5.76254 5.89335 5.97738 6.12313 6.28864 6.47716 6.83094 7.35609 8.90300 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.046445 B = 0.002578 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.714385 B =10857.484442 C =11087.274757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.071 3.929 11 N -0.532 5.532 12 C 0.040 3.960 13 C -0.113 4.113 14 C -0.080 4.080 15 H 0.092 0.908 16 C 0.075 3.925 17 O -0.327 6.327 18 C 0.109 3.891 19 C -0.222 4.222 20 C -0.088 4.088 21 C -0.166 4.166 22 C -0.084 4.084 23 C -0.172 4.172 24 C 0.044 3.956 25 H 0.264 0.736 26 H -0.004 1.004 27 H -0.010 1.010 28 H 0.067 0.933 29 H 0.025 0.975 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.132 0.868 41 H 0.096 0.904 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -25.141 -7.839 27.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.585 4.585 8 H 0.080 0.920 9 C -0.006 4.006 10 C -0.057 4.057 11 N -0.257 5.257 12 C -0.089 4.089 13 C -0.151 4.151 14 C -0.099 4.099 15 H 0.111 0.889 16 C 0.000 4.000 17 O -0.242 6.242 18 C 0.064 3.936 19 C -0.241 4.241 20 C -0.106 4.106 21 C -0.184 4.184 22 C -0.102 4.102 23 C -0.191 4.191 24 C -0.084 4.084 25 H 0.073 0.927 26 H 0.014 0.986 27 H 0.008 0.992 28 H 0.085 0.915 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.150 0.850 41 H 0.114 0.886 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.261 -25.019 -7.244 26.789 hybrid contribution 0.500 1.507 -0.639 1.711 sum 6.760 -23.512 -7.883 25.703 Atomic orbital electron populations 1.70107 1.07882 1.27895 1.51298 1.26002 0.95785 1.03462 0.94575 0.85455 0.78228 0.77837 0.79252 1.19087 1.20838 1.19036 1.21595 0.93573 0.92203 1.51106 0.92013 1.18987 0.94268 0.92257 0.95066 1.22146 0.95721 0.88443 0.99379 1.64778 1.14105 1.03240 1.43551 1.22775 0.96727 0.97009 0.92339 1.22405 1.00551 0.92815 0.99375 1.21959 0.96005 0.93700 0.98208 0.88938 1.22801 0.92534 0.85643 0.98993 1.86045 1.40862 1.30377 1.66867 1.19348 0.92910 0.88958 0.92424 1.21515 0.94789 1.02662 1.05119 1.21307 1.00819 0.92852 0.95574 1.21433 0.94414 0.99758 1.02787 1.21310 0.95889 0.97717 0.95291 1.20721 1.00809 0.94043 1.03504 1.23222 0.94319 0.89729 1.01106 0.92726 0.98590 0.99157 0.91473 0.95638 0.95122 0.92327 0.90859 0.90347 0.91376 0.90165 0.84672 0.83773 0.83599 0.83090 0.85031 0.88609 0.93019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 3 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 8 H 0.06 3.39 7.74 -2.91 -0.02 3.36 16 9 C 0.03 1.72 4.72 29.85 0.14 1.86 16 10 C 0.07 3.05 4.94 86.30 0.43 3.48 16 11 N -0.53 -19.73 5.40 -882.57 -4.77 -24.49 16 12 C 0.04 1.42 5.35 86.41 0.46 1.88 16 13 C -0.11 -3.08 6.46 31.47 0.20 -2.88 16 14 C -0.08 -1.91 3.31 -9.59 -0.03 -1.94 16 15 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 16 C 0.08 1.51 4.09 71.98 0.29 1.81 16 17 O -0.33 -7.63 10.08 -92.55 -0.93 -8.56 16 18 C 0.11 2.33 6.69 22.50 0.15 2.48 16 19 C -0.22 -4.05 9.04 22.36 0.20 -3.85 16 20 C -0.09 -1.31 10.04 22.25 0.22 -1.08 16 21 C -0.17 -2.24 10.04 22.28 0.22 -2.02 16 22 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 23 C -0.17 -3.26 9.99 22.37 0.22 -3.04 16 24 C 0.04 1.19 5.99 86.65 0.52 1.71 16 25 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 26 H 0.00 -0.25 6.64 -2.39 -0.02 -0.26 16 27 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 28 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.03 1.07 7.89 -2.39 -0.02 1.05 16 30 H 0.03 1.19 7.14 -2.38 -0.02 1.17 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.07 1.85 7.73 -2.38 -0.02 1.84 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 1.29 7.47 -2.39 -0.02 1.28 16 35 H 0.08 1.34 7.67 -2.39 -0.02 1.32 16 36 H 0.14 2.13 6.30 -2.91 -0.02 2.11 16 37 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 38 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.05 1.33 7.76 -2.39 -0.02 1.31 16 Total: -1.00 -67.95 340.61 1.54 -66.41 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.97 Total: 10.97 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.96 Total: -33.52 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -4.48 Total: -81.89 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.93 Total: -8.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -67.95 1.54 -66.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272506641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.474 kcal (2) G-P(sol) polarization free energy of solvation -67.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds