Wall clock time and date at job start Mon Mar 30 2020 02:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38238 * 119.99605 * 2 1 4 4 C 1.38230 * 119.99732 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00430 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00293 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47146 * 90.00667 * 6 5 4 8 8 H 1.08996 * 109.47661 * 54.99846 * 7 6 5 9 9 C 1.52999 * 109.46845 * 294.99602 * 7 6 5 10 10 C 1.50700 * 109.47339 * 174.99890 * 7 6 5 11 11 O 1.21287 * 119.99615 * 14.50460 * 10 7 6 12 12 N 1.34778 * 120.00446 * 194.50102 * 10 7 6 13 13 C 1.46498 * 119.99390 * 3.82086 * 12 10 7 14 14 C 1.46492 * 120.00161 * 183.81678 * 12 10 7 15 15 C 1.50703 * 109.47258 * 90.00345 * 14 12 10 16 16 H 1.07998 * 119.99658 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00255 * 179.97438 * 15 14 12 18 18 N 1.31511 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46854 * 89.99826 * 19 17 15 21 21 H 1.48496 * 109.47410 * 210.00079 * 19 17 15 22 22 H 1.48502 * 109.47075 * 330.00228 * 19 17 15 23 23 C 1.38238 * 119.99629 * 0.03394 * 5 4 3 24 24 C 1.38228 * 119.99997 * 359.96143 * 23 5 4 25 25 H 1.08994 * 109.47099 * 90.00166 * 1 2 3 26 26 H 1.09004 * 109.46565 * 209.99815 * 1 2 3 27 27 H 1.08997 * 109.46750 * 329.99239 * 1 2 3 28 28 H 1.07998 * 120.00056 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99960 * 179.70605 * 4 3 2 30 30 H 1.09005 * 109.46953 * 210.00253 * 6 5 4 31 31 H 1.08999 * 109.47338 * 329.99850 * 6 5 4 32 32 H 1.08994 * 109.47505 * 308.55171 * 9 7 6 33 33 H 1.09009 * 109.46861 * 68.55207 * 9 7 6 34 34 H 1.09007 * 109.47296 * 188.54810 * 9 7 6 35 35 H 1.08991 * 109.47494 * 84.78656 * 13 12 10 36 36 H 1.09010 * 109.46644 * 204.78460 * 13 12 10 37 37 H 1.09003 * 109.47051 * 324.77659 * 13 12 10 38 38 H 1.08995 * 109.47161 * 210.00033 * 14 12 10 39 39 H 1.09002 * 109.47311 * 330.00353 * 14 12 10 40 40 H 0.96994 * 120.00144 * 179.97438 * 18 17 15 41 41 H 1.08006 * 120.00023 * 180.02562 * 23 5 4 42 42 H 1.08002 * 119.99953 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0002 -0.0005 6 6 5.7787 0.0003 -0.0017 7 6 6.2898 0.0008 1.4403 8 1 5.8557 -0.8408 1.9801 9 6 5.8856 1.3084 2.1242 10 6 7.7917 -0.1230 1.4411 11 8 8.4157 0.0594 0.4171 12 7 8.4416 -0.4363 2.5795 13 6 7.6836 -0.7386 3.7961 14 6 9.9059 -0.4747 2.6002 15 6 10.4390 0.8861 2.9679 16 1 9.7553 1.6984 3.1659 17 6 11.7994 1.0942 3.0516 18 7 12.6319 0.1052 2.8100 19 14 12.4600 2.7811 3.5066 20 1 12.6059 2.8742 4.9815 21 1 13.7835 2.9842 2.8645 22 1 11.5158 3.8261 3.0357 23 6 3.5806 -1.1970 -0.0007 24 6 2.1983 -1.1971 -0.0001 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1326 -0.0053 30 1 6.1417 -0.8900 -0.5155 31 1 6.1417 0.8900 -0.5162 32 1 6.1894 2.1517 1.5041 33 1 4.8042 1.3281 2.2600 34 1 6.3751 1.3768 3.0957 35 1 7.3935 -1.7892 3.7919 36 1 8.3031 -0.5362 4.6699 37 1 6.7902 -0.1150 3.8319 38 1 10.2398 -1.2065 3.3358 39 1 10.2761 -0.7556 1.6142 40 1 13.5889 0.2516 2.8685 41 1 4.1207 -2.1324 -0.0003 42 1 1.6584 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272511993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:11 Heat of formation + Delta-G solvation = -30.017730 kcal Electronic energy + Delta-G solvation = -20955.096123 eV Core-core repulsion = 17899.320688 eV Total energy + Delta-G solvation = -3055.775435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86441 -38.91143 -35.20117 -34.71563 -32.71827 -31.97719 -30.97981 -28.51054 -27.56322 -25.98590 -25.28396 -23.57473 -22.72289 -21.65938 -20.42029 -18.18526 -16.69056 -16.48541 -15.73160 -15.56164 -15.32980 -15.02364 -14.53866 -14.41863 -13.92173 -13.81469 -13.45095 -13.08295 -12.83419 -12.57013 -12.34481 -12.22077 -12.02957 -11.93641 -11.82893 -11.63666 -11.18724 -11.07859 -10.99490 -10.94421 -10.75412 -10.67131 -10.52616 -10.13880 -9.60637 -8.97537 -8.79959 -8.46348 -8.42423 -7.59382 -6.03086 -4.07966 1.27854 1.35661 3.30335 3.36808 3.40202 3.48835 3.66176 4.04828 4.45329 4.71230 4.72434 4.88974 4.96360 5.04582 5.13641 5.27044 5.30625 5.32693 5.37280 5.44968 5.59189 5.61541 5.64835 5.70631 5.84305 5.92421 5.95656 6.00239 6.06022 6.10375 6.21268 6.35982 6.39608 6.43939 6.51277 6.69621 6.97814 7.09429 7.47615 7.58124 7.93813 8.25316 8.46832 8.92008 9.14075 9.57239 11.04978 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.003458 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.223089 B = 8096.016025 C = 8310.223487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.110 4.110 5 C -0.075 4.075 6 C -0.063 4.063 7 C -0.103 4.103 8 H 0.086 0.914 9 C -0.144 4.144 10 C 0.509 3.491 11 O -0.544 6.544 12 N -0.602 5.602 13 C 0.078 3.922 14 C 0.244 3.756 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.114 4.114 24 C -0.120 4.120 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.044 0.956 40 H 0.263 0.737 41 H 0.121 0.879 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.734 -1.387 -2.028 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.098 4.098 3 C -0.139 4.139 4 C -0.128 4.128 5 C -0.075 4.075 6 C -0.101 4.101 7 C -0.125 4.125 8 H 0.104 0.896 9 C -0.201 4.201 10 C 0.296 3.704 11 O -0.422 6.422 12 N -0.334 5.334 13 C -0.066 4.066 14 C 0.124 3.876 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.132 4.132 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.049 0.951 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.139 0.861 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.174 -1.347 -2.559 22.362 hybrid contribution 0.500 0.868 0.438 1.093 sum -21.674 -0.479 -2.121 21.782 Atomic orbital electron populations 1.20764 0.91528 1.02538 1.02068 1.19877 0.95845 0.93333 1.00792 1.21003 0.94200 0.97355 1.01315 1.21105 0.93950 0.97869 0.99891 1.19973 0.95849 0.93067 0.98630 1.20436 0.89519 1.04379 0.95737 1.21246 0.93778 1.00170 0.97264 0.89555 1.21857 1.01232 0.96032 1.00994 1.20295 0.88906 0.77448 0.83789 1.90652 1.68967 1.50437 1.32125 1.48119 1.09408 1.67113 1.08732 1.21764 0.96698 0.99141 0.89003 1.19292 0.72442 0.97133 0.98693 1.21445 0.91697 0.96245 1.47068 0.92487 1.24942 0.96778 0.97124 0.95318 1.69933 1.02859 1.31398 1.49226 0.86500 0.78367 0.84249 0.78332 1.20654 1.21079 1.19889 1.21081 0.94032 0.97799 1.00297 1.20983 0.94163 0.97351 1.01319 0.91448 0.91750 0.91738 0.86358 0.85958 0.90520 0.90015 0.92051 0.91899 0.91592 0.93933 0.90743 0.92000 0.95106 0.93799 0.92728 0.86069 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.10 -0.96 5.88 -104.62 -0.62 -1.58 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.11 -1.25 8.19 -39.59 -0.32 -1.57 16 5 C -0.08 -0.92 4.72 -104.63 -0.49 -1.41 16 6 C -0.06 -0.90 4.15 -27.89 -0.12 -1.02 16 7 C -0.10 -1.57 1.88 -91.77 -0.17 -1.75 16 8 H 0.09 1.17 7.44 -51.93 -0.39 0.78 16 9 C -0.14 -1.98 8.10 37.16 0.30 -1.68 16 10 C 0.51 10.72 6.88 -10.98 -0.08 10.64 16 11 O -0.54 -13.83 15.64 5.55 0.09 -13.74 16 12 N -0.60 -13.00 2.86 -182.96 -0.52 -13.52 16 13 C 0.08 1.27 9.76 59.85 0.58 1.85 16 14 C 0.24 6.49 5.17 -5.20 -0.03 6.47 16 15 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 16 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 19 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 23 C -0.11 -1.28 9.70 -39.58 -0.38 -1.67 16 24 C -0.12 -1.21 9.70 -39.59 -0.38 -1.60 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.12 1.29 8.04 -52.49 -0.42 0.87 16 30 H 0.08 1.14 8.08 -51.93 -0.42 0.72 16 31 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 32 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.06 0.73 6.85 -51.92 -0.36 0.38 16 34 H 0.07 0.94 6.07 -51.92 -0.32 0.62 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.24 8.03 -51.92 -0.42 0.82 16 37 H 0.06 0.85 4.78 -51.93 -0.25 0.60 16 38 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 344.97 15.07 5.20 5.20 Total: -1.00 -33.23 344.97 -8.38 -41.60 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -6.70 Total: -1.27 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -2.15 Total: -9.10 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.21 Total: -39.69 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.23 -8.38 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272511993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.584 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds