Wall clock time and date at job start Mon Mar 30 2020 02:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38238 * 119.99605 * 2 1 4 4 C 1.38230 * 119.99732 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00430 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00293 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47146 * 90.00667 * 6 5 4 8 8 H 1.08996 * 109.47661 * 54.99846 * 7 6 5 9 9 C 1.52999 * 109.46845 * 294.99602 * 7 6 5 10 10 C 1.50700 * 109.47339 * 174.99890 * 7 6 5 11 11 O 1.21287 * 119.99615 * 14.50460 * 10 7 6 12 12 N 1.34778 * 120.00446 * 194.50102 * 10 7 6 13 13 C 1.46498 * 119.99390 * 3.82086 * 12 10 7 14 14 C 1.46492 * 120.00161 * 183.81678 * 12 10 7 15 15 C 1.50703 * 109.47258 * 90.00345 * 14 12 10 16 16 H 1.07998 * 119.99658 * 359.97438 * 15 14 12 17 17 C 1.37876 * 120.00255 * 179.97438 * 15 14 12 18 18 N 1.31511 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00167 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46854 * 89.99826 * 19 17 15 21 21 H 1.48496 * 109.47410 * 210.00079 * 19 17 15 22 22 H 1.48502 * 109.47075 * 330.00228 * 19 17 15 23 23 C 1.38238 * 119.99629 * 0.03394 * 5 4 3 24 24 C 1.38228 * 119.99997 * 359.96143 * 23 5 4 25 25 H 1.08994 * 109.47099 * 90.00166 * 1 2 3 26 26 H 1.09004 * 109.46565 * 209.99815 * 1 2 3 27 27 H 1.08997 * 109.46750 * 329.99239 * 1 2 3 28 28 H 1.07998 * 120.00056 * 359.97438 * 3 2 1 29 29 H 1.07999 * 119.99960 * 179.70605 * 4 3 2 30 30 H 1.09005 * 109.46953 * 210.00253 * 6 5 4 31 31 H 1.08999 * 109.47338 * 329.99850 * 6 5 4 32 32 H 1.08994 * 109.47505 * 308.55171 * 9 7 6 33 33 H 1.09009 * 109.46861 * 68.55207 * 9 7 6 34 34 H 1.09007 * 109.47296 * 188.54810 * 9 7 6 35 35 H 1.08991 * 109.47494 * 84.78656 * 13 12 10 36 36 H 1.09010 * 109.46644 * 204.78460 * 13 12 10 37 37 H 1.09003 * 109.47051 * 324.77659 * 13 12 10 38 38 H 1.08995 * 109.47161 * 210.00033 * 14 12 10 39 39 H 1.09002 * 109.47311 * 330.00353 * 14 12 10 40 40 H 0.96994 * 120.00144 * 179.97438 * 18 17 15 41 41 H 1.08006 * 120.00023 * 180.02562 * 23 5 4 42 42 H 1.08002 * 119.99953 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2718 0.0002 -0.0005 6 6 5.7787 0.0003 -0.0017 7 6 6.2898 0.0008 1.4403 8 1 5.8557 -0.8408 1.9801 9 6 5.8856 1.3084 2.1242 10 6 7.7917 -0.1230 1.4411 11 8 8.4157 0.0594 0.4171 12 7 8.4416 -0.4363 2.5795 13 6 7.6836 -0.7386 3.7961 14 6 9.9059 -0.4747 2.6002 15 6 10.4390 0.8861 2.9679 16 1 9.7553 1.6984 3.1659 17 6 11.7994 1.0942 3.0516 18 7 12.6319 0.1052 2.8100 19 14 12.4600 2.7811 3.5066 20 1 12.6059 2.8742 4.9815 21 1 13.7835 2.9842 2.8645 22 1 11.5158 3.8261 3.0357 23 6 3.5806 -1.1970 -0.0007 24 6 2.1983 -1.1971 -0.0001 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6581 2.1325 -0.0004 29 1 4.1204 2.1326 -0.0053 30 1 6.1417 -0.8900 -0.5155 31 1 6.1417 0.8900 -0.5162 32 1 6.1894 2.1517 1.5041 33 1 4.8042 1.3281 2.2600 34 1 6.3751 1.3768 3.0957 35 1 7.3935 -1.7892 3.7919 36 1 8.3031 -0.5362 4.6699 37 1 6.7902 -0.1150 3.8319 38 1 10.2398 -1.2065 3.3358 39 1 10.2761 -0.7556 1.6142 40 1 13.5889 0.2516 2.8685 41 1 4.1207 -2.1324 -0.0003 42 1 1.6584 -2.1324 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272511993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:10 Heat of formation + Delta-G solvation = -48.694661 kcal Electronic energy + Delta-G solvation = -20955.906015 eV Core-core repulsion = 17899.320688 eV Total energy + Delta-G solvation = -3056.585328 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.13100 -40.11943 -36.69696 -36.21116 -34.72039 -33.05201 -31.76633 -29.96402 -29.00260 -27.47737 -26.37512 -25.33205 -23.57838 -22.99515 -21.39841 -19.76941 -18.68418 -18.08787 -17.13848 -16.63564 -16.51884 -16.24914 -16.13012 -15.80937 -15.11954 -14.76709 -14.47026 -14.26699 -14.19888 -13.79678 -13.57181 -13.54320 -13.35644 -13.18822 -13.09984 -12.93123 -12.83223 -12.66215 -12.46197 -12.22572 -12.03823 -11.99902 -11.82567 -11.70956 -11.66726 -10.65512 -10.49355 -9.75400 -9.42341 -9.30859 -8.23552 -6.38940 0.45913 0.56360 1.35451 1.38714 1.49038 1.82248 2.31432 2.45159 2.89557 3.05714 3.58097 3.85020 3.95855 4.07720 4.11960 4.22193 4.24428 4.36873 4.43919 4.48203 4.66753 4.67846 4.76716 4.80981 4.85997 4.89611 4.94703 4.96115 4.98339 5.05014 5.18555 5.22917 5.25642 5.31623 5.36631 5.55275 5.58422 5.77042 5.81328 5.83883 6.04883 6.19334 6.68569 6.78448 7.26833 7.47553 8.83675 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036203 B = 0.003458 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.223089 B = 8096.016025 C = 8310.223487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.118 4.118 5 C -0.089 4.089 6 C -0.055 4.055 7 C -0.087 4.087 8 H 0.113 0.887 9 C -0.137 4.137 10 C 0.499 3.501 11 O -0.600 6.600 12 N -0.609 5.609 13 C 0.073 3.927 14 C 0.257 3.743 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.006 3.994 18 N -0.930 5.930 19 Si 0.970 3.030 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.272 1.272 23 C -0.122 4.122 24 C -0.125 4.125 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.023 0.977 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.126 0.874 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.616 -0.575 -0.789 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.136 4.136 5 C -0.089 4.089 6 C -0.093 4.093 7 C -0.109 4.109 8 H 0.131 0.869 9 C -0.195 4.195 10 C 0.288 3.712 11 O -0.481 6.481 12 N -0.340 5.340 13 C -0.069 4.069 14 C 0.136 3.864 15 C -0.581 4.581 16 H 0.073 0.927 17 C -0.193 4.193 18 N -0.569 5.569 19 Si 0.794 3.206 20 H -0.187 1.187 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.140 4.140 24 C -0.143 4.143 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.041 0.959 39 H 0.015 0.985 40 H 0.076 0.924 41 H 0.144 0.856 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -25.099 -0.549 -1.282 25.138 hybrid contribution 1.339 0.552 0.012 1.448 sum -23.761 0.003 -1.270 23.795 Atomic orbital electron populations 1.20821 0.89477 1.03605 1.02919 1.20266 0.97434 0.92987 0.99219 1.21266 0.93729 0.98565 1.00782 1.21198 0.94728 0.97567 1.00141 1.19750 0.94107 0.94112 1.00935 1.20278 0.91472 1.02803 0.94743 1.21217 0.88865 1.02125 0.98644 0.86925 1.21836 1.02970 0.94429 1.00230 1.21394 0.91354 0.75839 0.82603 1.90616 1.70719 1.52698 1.34102 1.48160 1.07769 1.67078 1.10986 1.22058 0.96963 1.01578 0.86325 1.18773 0.75936 0.96218 0.95517 1.21706 0.92236 0.96851 1.47343 0.92743 1.25896 0.97042 1.01374 0.94974 1.70056 1.03306 1.33697 1.49882 0.85387 0.77484 0.78859 0.78919 1.18693 1.20636 1.19656 1.21216 0.94836 0.97600 1.00383 1.21258 0.93713 0.98563 1.00717 0.90596 0.90704 0.90742 0.84417 0.85810 0.91920 0.91932 0.93202 0.88997 0.91741 0.91157 0.91274 0.88857 0.95945 0.98536 0.92375 0.85594 0.84346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.10 -1.63 5.88 -19.86 -0.12 -1.75 16 3 C -0.13 -2.22 9.70 22.27 0.22 -2.00 16 4 C -0.12 -2.49 8.19 22.27 0.18 -2.30 16 5 C -0.09 -2.08 4.72 -19.87 -0.09 -2.17 16 6 C -0.06 -1.60 4.15 29.85 0.12 -1.48 16 7 C -0.09 -2.60 1.88 -11.54 -0.02 -2.63 16 8 H 0.11 2.79 7.44 -2.39 -0.02 2.77 16 9 C -0.14 -3.55 8.10 71.98 0.58 -2.97 16 10 C 0.50 21.55 6.88 87.66 0.60 22.15 16 11 O -0.60 -32.23 15.64 -3.05 -0.05 -32.28 16 12 N -0.61 -26.76 2.86 -851.14 -2.43 -29.19 16 13 C 0.07 2.26 9.76 127.77 1.25 3.50 16 14 C 0.26 14.32 5.17 85.64 0.44 14.76 16 15 C -0.54 -31.91 9.39 25.60 0.24 -31.67 16 16 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 17 C 0.01 0.35 5.46 84.65 0.46 0.81 16 18 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 19 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 23 C -0.12 -2.54 9.70 22.27 0.22 -2.33 16 24 C -0.12 -2.18 9.70 22.27 0.22 -1.96 16 25 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 27 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 28 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 29 H 0.12 2.48 8.04 -2.91 -0.02 2.46 16 30 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 31 H 0.06 2.02 8.02 -2.39 -0.02 2.00 16 32 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 33 H 0.09 1.87 6.85 -2.38 -0.02 1.86 16 34 H 0.06 1.69 6.07 -2.38 -0.01 1.67 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 2.23 8.03 -2.38 -0.02 2.21 16 37 H 0.09 2.30 4.78 -2.39 -0.01 2.29 16 38 H 0.02 1.26 8.07 -2.39 -0.02 1.25 16 39 H 0.00 -0.23 7.37 -2.39 -0.02 -0.24 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -75.07 344.97 5.83 -69.24 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.98 Total: 12.24 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.01 Total: -10.50 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -2.15 Total: -86.14 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -75.07 5.83 -69.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272511993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.545 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds