Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00271 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47084 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00280 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99788 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99600 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47356 * 60.00144 * 17 15 13 19 19 H 1.48508 * 109.46668 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46969 * 299.99834 * 17 15 13 21 21 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 22 22 C 1.50699 * 120.00166 * 179.72002 * 21 5 4 23 23 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 25 25 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 26 26 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 27 27 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 30 30 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 33 33 H 0.97005 * 119.99463 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47245 * 300.00900 * 11 10 8 35 35 H 1.09002 * 109.47021 * 60.00278 * 11 10 8 36 36 H 1.09001 * 109.47375 * 300.00051 * 12 11 10 37 37 H 1.09002 * 109.47045 * 60.00127 * 12 11 10 38 38 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46714 * 89.99954 * 22 21 5 40 40 H 1.09001 * 109.47281 * 210.00054 * 22 21 5 41 41 H 1.09001 * 109.47263 * 330.00636 * 22 21 5 42 42 H 1.07998 * 120.00511 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.7957 -0.1248 -1.4366 9 8 8.4021 -0.0333 -0.3902 10 7 8.4696 -0.2268 -2.5993 11 6 9.9345 -0.2256 -2.5994 12 6 10.4445 -0.3514 -4.0364 13 6 11.9516 -0.3507 -4.0364 14 1 12.4916 -0.2692 -3.1047 15 6 12.6409 -0.4542 -5.2260 16 7 11.9834 -0.5529 -6.3607 17 14 14.5090 -0.4541 -5.2260 18 1 15.0040 -1.6013 -4.4235 19 1 15.0039 -0.5748 -6.6209 20 1 15.0038 0.8145 -4.6337 21 6 3.5807 -1.1969 -0.0053 22 6 4.3342 -2.5019 -0.0117 23 6 2.1980 -1.1969 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1328 0.0010 29 1 6.1421 -0.8417 0.5900 30 1 6.1420 0.9316 0.4349 31 1 5.9254 -1.0569 -1.8708 32 1 5.9253 0.7163 -2.0259 33 1 7.9845 -0.3004 -3.4361 34 1 10.2971 0.7063 -2.1657 35 1 10.2986 -1.0667 -2.0094 36 1 10.0820 -1.2832 -4.4704 37 1 10.0804 0.4900 -4.6261 38 1 12.4684 -0.6261 -7.1975 39 1 4.5158 -2.8215 1.0145 40 1 3.7451 -3.2591 -0.5292 41 1 5.2867 -2.3691 -0.5248 42 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272983684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = -52.374279 kcal Electronic energy + Delta-G solvation = -19961.032226 eV Core-core repulsion = 16904.287338 eV Total energy + Delta-G solvation = -3056.744888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.05069 -39.07878 -35.19972 -34.66191 -32.84725 -32.58385 -31.41397 -29.62805 -27.44815 -27.09171 -24.86781 -23.31254 -22.18157 -20.95952 -20.20609 -19.83175 -16.96403 -16.32109 -16.30224 -15.70485 -15.16761 -15.09600 -14.89695 -14.47919 -14.21662 -13.81412 -13.45223 -13.35247 -13.22593 -12.87858 -12.69274 -12.40096 -12.29154 -12.25839 -12.18133 -11.49864 -11.29599 -11.21290 -11.01879 -10.97962 -10.84755 -10.65979 -10.31839 -9.80288 -9.46322 -9.20118 -8.89930 -8.53423 -8.52915 -8.34525 -6.09529 -4.12500 1.16290 1.23856 3.03482 3.31006 3.34733 3.37676 3.49807 3.77599 4.41468 4.56560 4.61158 4.75595 4.81792 4.95705 5.03883 5.11520 5.18786 5.27316 5.30919 5.32481 5.38775 5.48983 5.51714 5.56119 5.63229 5.74035 5.81414 5.94099 6.07072 6.19530 6.31923 6.35335 6.35899 6.41577 6.56858 6.74291 6.88207 6.94303 7.51443 7.61567 7.88527 8.03607 8.27774 8.67817 8.93379 9.52263 11.02009 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041791 B = 0.002487 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.842058 B =11255.998905 C =11315.260881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.085 4.085 6 C -0.065 4.065 7 C -0.136 4.136 8 C 0.503 3.497 9 O -0.553 6.553 10 N -0.724 5.724 11 C 0.121 3.879 12 C 0.013 3.987 13 C -0.522 4.522 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.077 4.077 22 C -0.121 4.121 23 C -0.121 4.121 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.398 0.602 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.936 -0.014 10.843 25.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.085 4.085 6 C -0.102 4.102 7 C -0.177 4.177 8 C 0.289 3.711 9 O -0.432 6.432 10 N -0.374 5.374 11 C -0.001 4.001 12 C -0.025 4.025 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.077 4.077 22 C -0.178 4.178 23 C -0.139 4.139 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.137 0.863 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.231 0.769 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.443 0.030 11.388 25.167 hybrid contribution 0.756 0.019 -0.634 0.987 sum -21.686 0.049 10.753 24.206 Atomic orbital electron populations 1.20773 0.91407 1.02570 1.02217 1.19874 0.95898 0.93232 1.00134 1.20981 0.94165 0.97396 1.01831 1.21072 0.94079 0.97648 0.99855 1.19813 0.95648 0.92623 1.00404 1.20321 0.89681 1.04429 0.95813 1.21676 0.92742 1.04409 0.98824 1.20608 0.89762 0.76604 0.84113 1.90669 1.70599 1.50327 1.31560 1.46366 1.09233 1.73294 1.08460 1.21708 0.76330 1.00714 1.01383 1.19318 0.96482 0.97741 0.88936 1.21021 0.90979 1.51011 0.93101 0.92312 1.25002 0.98815 0.94992 0.95502 1.69942 1.35746 1.49905 0.97731 0.86566 0.85180 0.78773 0.76980 1.20100 1.21240 1.20109 1.19798 0.93552 0.95016 0.99319 1.20903 1.00429 0.93874 1.02588 1.20879 0.93437 0.97463 1.02078 0.91281 0.91715 0.91690 0.86302 0.85957 0.90029 0.90272 0.89021 0.89020 0.76896 0.92648 0.92630 0.95971 0.95968 0.92782 0.91042 0.91582 0.90844 0.86287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.09 -0.83 5.88 -104.63 -0.62 -1.44 16 3 C -0.13 -1.17 9.70 -39.58 -0.38 -1.55 16 4 C -0.11 -1.10 9.68 -39.58 -0.38 -1.48 16 5 C -0.08 -0.92 5.13 -104.62 -0.54 -1.46 16 6 C -0.06 -0.76 3.94 -27.88 -0.11 -0.87 16 7 C -0.14 -1.62 5.49 -27.88 -0.15 -1.78 16 8 C 0.50 8.33 7.83 -10.98 -0.09 8.24 16 9 O -0.55 -11.21 15.98 5.56 0.09 -11.13 16 10 N -0.72 -12.55 5.56 -60.30 -0.33 -12.89 16 11 C 0.12 2.59 5.61 -4.05 -0.02 2.57 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 14 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 17 Si 0.90 21.44 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 C -0.08 -0.79 5.88 -104.62 -0.62 -1.40 16 22 C -0.12 -1.08 9.22 36.00 0.33 -0.75 16 23 C -0.12 -1.14 9.36 -39.58 -0.37 -1.51 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.08 1.01 6.96 -51.93 -0.36 0.65 16 30 H 0.08 0.98 8.01 -51.93 -0.42 0.57 16 31 H 0.09 0.96 6.88 -51.93 -0.36 0.60 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.40 5.95 8.47 -40.82 -0.35 5.60 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.07 0.70 5.40 -51.93 -0.28 0.41 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -31.88 350.27 -9.18 -41.06 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.79 Total: 1.66 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.14 Total: -14.95 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.40 Total: -38.34 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.88 -9.18 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272983684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.318 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds