Wall clock time and date at job start Mon Mar 30 2020 01:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99731 * 2 1 4 4 C 1.38211 * 120.00115 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99732 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99880 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46912 * 265.00270 * 6 5 4 8 8 C 1.50703 * 109.46912 * 179.97438 * 7 6 5 9 9 O 1.21278 * 119.99985 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00161 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00271 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47194 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.47084 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00280 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99788 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00327 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99600 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47356 * 60.00144 * 17 15 13 19 19 H 1.48508 * 109.46668 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46969 * 299.99834 * 17 15 13 21 21 C 1.38210 * 120.00106 * 0.25347 * 5 4 3 22 22 C 1.50699 * 120.00166 * 179.72002 * 21 5 4 23 23 C 1.38206 * 120.00141 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47271 * 90.00384 * 1 2 3 25 25 H 1.09002 * 109.46819 * 210.00090 * 1 2 3 26 26 H 1.09001 * 109.47500 * 329.99729 * 1 2 3 27 27 H 1.07998 * 120.00075 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.00450 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47152 * 145.00042 * 6 5 4 30 30 H 1.09001 * 109.46980 * 25.00142 * 6 5 4 31 31 H 1.09001 * 109.47194 * 299.99742 * 7 6 5 32 32 H 1.08992 * 109.47399 * 59.99914 * 7 6 5 33 33 H 0.97005 * 119.99463 * 0.02562 * 10 8 7 34 34 H 1.08998 * 109.47245 * 300.00900 * 11 10 8 35 35 H 1.09002 * 109.47021 * 60.00278 * 11 10 8 36 36 H 1.09001 * 109.47375 * 300.00051 * 12 11 10 37 37 H 1.09002 * 109.47045 * 60.00127 * 12 11 10 38 38 H 0.97000 * 120.00354 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46714 * 89.99954 * 22 21 5 40 40 H 1.09001 * 109.47281 * 210.00054 * 22 21 5 41 41 H 1.09001 * 109.47263 * 330.00636 * 22 21 5 42 42 H 1.07998 * 120.00511 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 5.7787 0.0002 0.0005 7 6 6.2886 -0.1255 -1.4365 8 6 7.7957 -0.1248 -1.4366 9 8 8.4021 -0.0333 -0.3902 10 7 8.4696 -0.2268 -2.5993 11 6 9.9345 -0.2256 -2.5994 12 6 10.4445 -0.3514 -4.0364 13 6 11.9516 -0.3507 -4.0364 14 1 12.4916 -0.2692 -3.1047 15 6 12.6409 -0.4542 -5.2260 16 7 11.9834 -0.5529 -6.3607 17 14 14.5090 -0.4541 -5.2260 18 1 15.0040 -1.6013 -4.4235 19 1 15.0039 -0.5748 -6.6209 20 1 15.0038 0.8145 -4.6337 21 6 3.5807 -1.1969 -0.0053 22 6 4.3342 -2.5019 -0.0117 23 6 2.1980 -1.1969 -0.0005 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8899 0.5139 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1328 0.0010 29 1 6.1421 -0.8417 0.5900 30 1 6.1420 0.9316 0.4349 31 1 5.9254 -1.0569 -1.8708 32 1 5.9253 0.7163 -2.0259 33 1 7.9845 -0.3004 -3.4361 34 1 10.2971 0.7063 -2.1657 35 1 10.2986 -1.0667 -2.0094 36 1 10.0820 -1.2832 -4.4704 37 1 10.0804 0.4900 -4.6261 38 1 12.4684 -0.6261 -7.1975 39 1 4.5158 -2.8215 1.0145 40 1 3.7451 -3.2591 -0.5292 41 1 5.2867 -2.3691 -0.5248 42 1 1.6582 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272983684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:39 Heat of formation + Delta-G solvation = -70.088656 kcal Electronic energy + Delta-G solvation = -19961.800379 eV Core-core repulsion = 16904.287338 eV Total energy + Delta-G solvation = -3057.513041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.99675 -40.27691 -36.68062 -35.72942 -34.81125 -33.35625 -32.37900 -31.32181 -28.24515 -27.94773 -26.57341 -24.41649 -22.97909 -22.73374 -21.36852 -20.78227 -18.61768 -18.01753 -17.20626 -16.73211 -16.51678 -16.39406 -16.37385 -15.61421 -15.24301 -15.00543 -14.57796 -14.31627 -14.09007 -14.01659 -13.92327 -13.50770 -13.24055 -13.20435 -13.16212 -12.91345 -12.81386 -12.54757 -12.24114 -12.22454 -12.09281 -11.74264 -11.66905 -11.65678 -11.48120 -10.81424 -10.60749 -10.00013 -9.61611 -9.27070 -8.24692 -6.35395 0.43043 0.52024 1.41268 1.43597 1.51624 1.68293 2.28228 2.46314 2.83947 3.09783 3.70471 3.88427 4.02201 4.05849 4.08423 4.17748 4.30079 4.45995 4.47519 4.53203 4.54652 4.64659 4.72547 4.80096 4.83529 4.85299 4.87348 4.97604 5.01667 5.05843 5.18472 5.30486 5.33922 5.42049 5.50264 5.57577 5.59865 5.74088 5.78272 5.80920 6.15712 6.18461 6.65158 6.77744 7.30901 7.33883 8.86867 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.041791 B = 0.002487 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.842058 B =11255.998905 C =11315.260881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.134 4.134 4 C -0.119 4.119 5 C -0.099 4.099 6 C -0.057 4.057 7 C -0.123 4.123 8 C 0.504 3.496 9 O -0.591 6.591 10 N -0.720 5.720 11 C 0.140 3.860 12 C 0.023 3.977 13 C -0.549 4.549 14 H 0.058 0.942 15 C 0.007 3.993 16 N -0.926 5.926 17 Si 0.965 3.035 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.269 1.269 21 C -0.087 4.087 22 C -0.121 4.121 23 C -0.130 4.130 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.136 0.864 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.411 0.589 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.008 0.992 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.149 -0.099 10.940 26.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.095 4.095 7 C -0.162 4.162 8 C 0.292 3.708 9 O -0.473 6.473 10 N -0.371 5.371 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.587 4.587 14 H 0.076 0.924 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.790 3.210 18 H -0.193 1.193 19 H -0.205 1.205 20 H -0.194 1.194 21 C -0.087 4.087 22 C -0.177 4.177 23 C -0.147 4.147 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.154 0.846 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.247 0.753 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -23.687 -0.056 11.479 26.322 hybrid contribution 1.053 0.050 -0.643 1.235 sum -22.634 -0.006 10.836 25.094 Atomic orbital electron populations 1.20820 0.89555 1.03508 1.02966 1.20245 0.97388 0.92997 0.98954 1.21248 0.93965 0.98437 1.01533 1.21248 0.94748 0.97733 0.99946 1.19743 0.94799 0.93353 1.02044 1.20194 0.90663 1.03353 0.95305 1.21657 0.88625 1.06296 0.99623 1.21391 0.91566 0.74925 0.82880 1.90653 1.71838 1.51894 1.32867 1.46209 1.07586 1.73549 1.09738 1.21199 0.78880 0.99641 0.98705 1.19129 0.95420 0.96284 0.90628 1.21451 0.92663 1.51245 0.93357 0.92362 1.25884 1.03869 0.94405 0.95073 1.70047 1.37690 1.50499 0.98326 0.85498 0.79128 0.79117 0.77306 1.19320 1.20536 1.19362 1.19986 0.94176 0.95165 0.99338 1.20913 1.00142 0.93842 1.02834 1.21139 0.93251 0.98470 1.01875 0.90508 0.90826 0.90784 0.84584 0.85340 0.91127 0.91407 0.86972 0.86984 0.75328 0.93753 0.93675 0.97304 0.97348 0.92508 0.90845 0.90198 0.91633 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 71.24 0.71 -0.45 16 2 C -0.10 -1.54 5.88 -19.87 -0.12 -1.66 16 3 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 4 C -0.12 -2.27 9.68 22.27 0.22 -2.06 16 5 C -0.10 -2.06 5.13 -19.86 -0.10 -2.16 16 6 C -0.06 -1.32 3.94 29.85 0.12 -1.21 16 7 C -0.12 -2.76 5.49 29.85 0.16 -2.60 16 8 C 0.50 16.49 7.83 87.66 0.69 17.18 16 9 O -0.59 -24.23 15.98 -3.02 -0.05 -24.28 16 10 N -0.72 -24.79 5.56 -463.07 -2.57 -27.37 16 11 C 0.14 6.06 5.61 86.38 0.48 6.55 16 12 C 0.02 1.16 5.09 29.85 0.15 1.31 16 13 C -0.55 -30.87 9.11 25.60 0.23 -30.64 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 15 C 0.01 0.37 5.46 84.66 0.46 0.83 16 16 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 17 Si 0.97 43.74 29.54 68.60 2.03 45.77 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C -0.09 -1.66 5.88 -19.87 -0.12 -1.78 16 22 C -0.12 -2.01 9.22 71.24 0.66 -1.36 16 23 C -0.13 -2.20 9.36 22.27 0.21 -1.99 16 24 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 26 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 27 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 28 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 29 H 0.07 1.77 6.96 -2.39 -0.02 1.75 16 30 H 0.07 1.69 8.01 -2.39 -0.02 1.67 16 31 H 0.11 2.13 6.88 -2.39 -0.02 2.11 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.41 11.99 8.47 -92.70 -0.79 11.21 16 34 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 41 H 0.06 1.18 5.40 -2.39 -0.01 1.16 16 42 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -68.00 350.27 3.88 -64.13 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.21 Total: 17.99 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 3.97 Total: -22.06 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.29 Total: -81.54 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.05 Total: -24.28 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.00 3.88 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272983684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.962 kcal (2) G-P(sol) polarization free energy of solvation -68.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds