Wall clock time and date at job start Mon Mar 30 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00144 * 2 1 4 4 C 1.38221 * 120.00136 * 180.25398 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.54072 * 4 3 2 6 6 C 1.38209 * 120.00368 * 0.39928 * 5 4 3 7 7 C 1.38218 * 120.00145 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99584 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47080 * 5.77775 * 8 7 2 10 10 C 1.53005 * 109.46791 * 245.78159 * 8 7 2 11 11 C 1.52999 * 109.47053 * 125.78341 * 8 7 2 12 12 C 1.50706 * 109.46904 * 184.99804 * 11 8 7 13 13 O 1.21287 * 119.99707 * 359.97438 * 12 11 8 14 14 N 1.34765 * 119.99937 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00044 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47329 * 180.02562 * 15 14 12 17 17 C 1.50691 * 109.46914 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99899 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99599 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00286 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46958 * 89.99788 * 21 19 17 23 23 H 1.48493 * 109.47066 * 209.99999 * 21 19 17 24 24 H 1.48499 * 109.46749 * 330.00071 * 21 19 17 25 25 H 1.08999 * 109.47323 * 95.59593 * 1 2 3 26 26 H 1.08995 * 109.47282 * 215.60321 * 1 2 3 27 27 H 1.08999 * 109.47058 * 335.59819 * 1 2 3 28 28 H 1.07995 * 120.00173 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.00273 * 179.72210 * 4 3 2 30 30 H 1.07997 * 119.99482 * 180.22520 * 5 4 3 31 31 H 1.07998 * 120.00161 * 179.83303 * 6 5 4 32 32 H 1.08997 * 109.46748 * 300.00023 * 10 8 7 33 33 H 1.09000 * 109.47042 * 59.99922 * 10 8 7 34 34 H 1.08993 * 109.46984 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.46993 * 304.99051 * 11 8 7 36 36 H 1.08996 * 109.47270 * 64.99674 * 11 8 7 37 37 H 0.96997 * 120.00217 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.47271 * 300.00263 * 15 14 12 39 39 H 1.09002 * 109.46618 * 60.00389 * 15 14 12 40 40 H 1.09000 * 109.47112 * 300.00303 * 16 15 14 41 41 H 1.09003 * 109.46755 * 59.99822 * 16 15 14 42 42 H 0.96998 * 119.99560 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3773 -2.3055 -0.1015 10 6 1.7025 -3.2387 1.3177 11 6 1.9194 -3.3663 -1.1681 12 6 1.0823 -4.6173 -1.2407 13 8 0.1936 -4.7999 -0.4358 14 7 1.3211 -5.5331 -2.2001 15 6 0.5077 -6.7496 -2.2704 16 6 0.9826 -7.6138 -3.4403 17 6 0.1454 -8.8647 -3.5130 18 1 -0.6459 -9.0274 -2.7962 19 6 0.3904 -9.8022 -4.4939 20 7 1.3544 -9.6043 -5.3665 21 14 -0.6468 -11.3532 -4.5836 22 1 -1.8240 -11.1117 -5.4562 23 1 0.1669 -12.4610 -5.1454 24 1 -1.1080 -11.7197 -3.2204 25 1 -0.3634 -0.1002 -1.0227 26 1 -0.3633 -0.8355 0.5982 27 1 -0.3633 0.9359 0.4246 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1325 -0.0098 30 1 5.3516 -0.0001 -0.0015 31 1 4.1206 -2.1323 0.0009 32 1 2.7696 -3.4352 1.4209 33 1 1.3641 -2.6230 2.1511 34 1 1.1571 -4.1824 1.3188 35 1 1.8178 -2.8067 -2.0979 36 1 2.9648 -3.6367 -1.0191 37 1 2.0316 -5.3870 -2.8441 38 1 0.6100 -7.3093 -1.3407 39 1 -0.5378 -6.4794 -2.4188 40 1 0.8807 -7.0543 -4.3702 41 1 2.0281 -7.8839 -3.2916 42 1 1.5264 -10.2637 -6.0568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273003256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:52 Heat of formation + Delta-G solvation = -45.053032 kcal Electronic energy + Delta-G solvation = -20396.332421 eV Core-core repulsion = 17339.905006 eV Total energy + Delta-G solvation = -3056.427415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17586 -39.04787 -35.42461 -34.55946 -32.90096 -32.82479 -30.31734 -29.59038 -27.61472 -26.99978 -24.70630 -23.65515 -21.76540 -21.01383 -20.36796 -19.52041 -17.17813 -16.44119 -16.13775 -15.81992 -15.20435 -15.09602 -14.76525 -14.46761 -14.11811 -13.86447 -13.68410 -13.25033 -13.03971 -12.86941 -12.59893 -12.42169 -12.29140 -12.11801 -11.77141 -11.41272 -11.21540 -11.18577 -11.03552 -10.78188 -10.64520 -10.55719 -10.30800 -9.75635 -9.43373 -9.15248 -8.92510 -8.68804 -8.53099 -8.34172 -6.10105 -4.12938 1.20783 1.24153 3.03641 3.28882 3.34970 3.38937 3.57194 3.74733 4.41000 4.60186 4.62805 4.79039 4.82931 4.98810 5.08039 5.14181 5.23776 5.26932 5.35835 5.46551 5.48773 5.55712 5.63158 5.67244 5.75473 5.89539 6.00718 6.05728 6.14543 6.33751 6.35023 6.35611 6.36609 6.44964 6.59738 6.74347 6.87532 6.95789 7.51390 7.61292 7.88265 8.04057 8.27539 8.68700 8.93255 9.51939 11.01523 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.002778 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.291825 B =10077.492945 C =10336.880343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.125 4.125 5 C -0.125 4.125 6 C -0.111 4.111 7 C -0.073 4.073 8 C -0.040 4.040 9 H 0.092 0.908 10 C -0.148 4.148 11 C -0.135 4.135 12 C 0.505 3.495 13 O -0.549 6.549 14 N -0.724 5.724 15 C 0.122 3.878 16 C 0.012 3.988 17 C -0.522 4.522 18 H 0.059 0.941 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.897 3.103 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.397 0.603 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 21.112 9.912 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.143 4.143 5 C -0.143 4.143 6 C -0.129 4.129 7 C -0.073 4.073 8 C -0.059 4.059 9 H 0.110 0.890 10 C -0.205 4.205 11 C -0.175 4.175 12 C 0.291 3.709 13 O -0.428 6.428 14 N -0.374 5.374 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.231 0.769 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.363 20.866 10.332 23.689 hybrid contribution 0.037 -0.749 -0.590 0.954 sum 4.400 20.117 9.742 22.781 Atomic orbital electron populations 1.20875 0.91292 1.02801 1.02710 1.19812 0.96083 0.92571 0.99707 1.21012 0.94276 0.97312 1.01286 1.21093 0.94303 0.97963 1.00900 1.21109 0.99749 0.92555 1.00927 1.21026 0.93686 0.98141 1.00085 1.19814 0.93656 0.94370 0.99435 1.19960 1.00317 0.90551 0.95052 0.89014 1.21946 1.01431 1.01732 0.95363 1.21760 1.00547 0.94789 1.00401 1.20553 0.84556 0.84700 0.81090 1.90632 1.33120 1.78432 1.40610 1.46370 1.37245 1.21831 1.31911 1.21703 0.93983 0.83414 1.00980 1.19321 0.97237 0.94067 0.91884 1.21059 1.17154 1.03686 1.14134 0.92268 1.25004 0.95325 0.98515 0.95474 1.69959 1.30592 1.35813 1.16971 0.86511 0.80120 0.82521 0.78408 1.20546 1.21155 1.19727 0.90996 0.90782 0.91754 0.86306 0.86386 0.86276 0.86025 0.93255 0.93065 0.89942 0.89099 0.89083 0.76941 0.92642 0.92650 0.95988 0.95975 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 9.15 36.00 0.33 -0.75 16 2 C -0.08 -0.84 5.88 -104.63 -0.62 -1.45 16 3 C -0.12 -1.12 9.68 -39.58 -0.38 -1.50 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.13 -1.14 10.05 -39.58 -0.40 -1.53 16 6 C -0.11 -1.11 8.79 -39.59 -0.35 -1.46 16 7 C -0.07 -0.78 4.78 -104.62 -0.50 -1.28 16 8 C -0.04 -0.47 1.94 -91.77 -0.18 -0.65 16 9 H 0.09 1.16 5.53 -51.93 -0.29 0.88 16 10 C -0.15 -1.79 8.80 37.16 0.33 -1.47 16 11 C -0.13 -1.61 4.83 -27.88 -0.13 -1.74 16 12 C 0.51 8.20 7.55 -10.99 -0.08 8.12 16 13 O -0.55 -10.68 13.97 5.55 0.08 -10.60 16 14 N -0.72 -12.41 5.56 -60.29 -0.33 -12.75 16 15 C 0.12 2.58 5.61 -4.04 -0.02 2.55 16 16 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 17 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.64 5.46 -17.81 -0.10 1.55 16 20 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.70 6.54 -51.93 -0.34 0.36 16 27 H 0.06 0.47 8.05 -51.93 -0.42 0.06 16 28 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 29 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.12 1.08 7.18 -52.49 -0.38 0.70 16 32 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.21 5.95 -51.93 -0.31 0.90 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.09 0.93 7.28 -51.93 -0.38 0.55 16 37 H 0.40 5.90 8.47 -40.82 -0.35 5.56 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -31.27 344.40 -8.94 -40.20 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.63 Total: 2.76 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: -2.96 Total: -15.75 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.40 Total: -38.17 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.27 -8.94 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273003256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.851 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds