Wall clock time and date at job start Mon Mar 30 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.00144 * 2 1 4 4 C 1.38221 * 120.00136 * 180.25398 * 3 2 1 5 5 C 1.38261 * 119.99497 * 359.54072 * 4 3 2 6 6 C 1.38209 * 120.00368 * 0.39928 * 5 4 3 7 7 C 1.38218 * 120.00145 * 179.97438 * 2 1 3 8 8 C 1.50704 * 119.99584 * 359.97438 * 7 2 1 9 9 H 1.09003 * 109.47080 * 5.77775 * 8 7 2 10 10 C 1.53005 * 109.46791 * 245.78159 * 8 7 2 11 11 C 1.52999 * 109.47053 * 125.78341 * 8 7 2 12 12 C 1.50706 * 109.46904 * 184.99804 * 11 8 7 13 13 O 1.21287 * 119.99707 * 359.97438 * 12 11 8 14 14 N 1.34765 * 119.99937 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00044 * 179.97438 * 14 12 11 16 16 C 1.53007 * 109.47329 * 180.02562 * 15 14 12 17 17 C 1.50691 * 109.46914 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99899 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99599 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00286 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46958 * 89.99788 * 21 19 17 23 23 H 1.48493 * 109.47066 * 209.99999 * 21 19 17 24 24 H 1.48499 * 109.46749 * 330.00071 * 21 19 17 25 25 H 1.08999 * 109.47323 * 95.59593 * 1 2 3 26 26 H 1.08995 * 109.47282 * 215.60321 * 1 2 3 27 27 H 1.08999 * 109.47058 * 335.59819 * 1 2 3 28 28 H 1.07995 * 120.00173 * 359.97438 * 3 2 1 29 29 H 1.07992 * 120.00273 * 179.72210 * 4 3 2 30 30 H 1.07997 * 119.99482 * 180.22520 * 5 4 3 31 31 H 1.07998 * 120.00161 * 179.83303 * 6 5 4 32 32 H 1.08997 * 109.46748 * 300.00023 * 10 8 7 33 33 H 1.09000 * 109.47042 * 59.99922 * 10 8 7 34 34 H 1.08993 * 109.46984 * 179.97438 * 10 8 7 35 35 H 1.08998 * 109.46993 * 304.99051 * 11 8 7 36 36 H 1.08996 * 109.47270 * 64.99674 * 11 8 7 37 37 H 0.96997 * 120.00217 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.47271 * 300.00263 * 15 14 12 39 39 H 1.09002 * 109.46618 * 60.00389 * 15 14 12 40 40 H 1.09000 * 109.47112 * 300.00303 * 16 15 14 41 41 H 1.09003 * 109.46755 * 59.99822 * 16 15 14 42 42 H 0.96998 * 119.99560 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0053 5 6 4.2717 -0.0001 -0.0010 6 6 3.5806 -1.1970 0.0002 7 6 2.1981 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0017 9 1 0.3773 -2.3055 -0.1015 10 6 1.7025 -3.2387 1.3177 11 6 1.9194 -3.3663 -1.1681 12 6 1.0823 -4.6173 -1.2407 13 8 0.1936 -4.7999 -0.4358 14 7 1.3211 -5.5331 -2.2001 15 6 0.5077 -6.7496 -2.2704 16 6 0.9826 -7.6138 -3.4403 17 6 0.1454 -8.8647 -3.5130 18 1 -0.6459 -9.0274 -2.7962 19 6 0.3904 -9.8022 -4.4939 20 7 1.3544 -9.6043 -5.3665 21 14 -0.6468 -11.3532 -4.5836 22 1 -1.8240 -11.1117 -5.4562 23 1 0.1669 -12.4610 -5.1454 24 1 -1.1080 -11.7197 -3.2204 25 1 -0.3634 -0.1002 -1.0227 26 1 -0.3633 -0.8355 0.5982 27 1 -0.3633 0.9359 0.4246 28 1 1.6583 2.1326 -0.0004 29 1 4.1204 2.1325 -0.0098 30 1 5.3516 -0.0001 -0.0015 31 1 4.1206 -2.1323 0.0009 32 1 2.7696 -3.4352 1.4209 33 1 1.3641 -2.6230 2.1511 34 1 1.1571 -4.1824 1.3188 35 1 1.8178 -2.8067 -2.0979 36 1 2.9648 -3.6367 -1.0191 37 1 2.0316 -5.3870 -2.8441 38 1 0.6100 -7.3093 -1.3407 39 1 -0.5378 -6.4794 -2.4188 40 1 0.8807 -7.0543 -4.3702 41 1 2.0281 -7.8839 -3.2916 42 1 1.5264 -10.2637 -6.0568 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273003256.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:52 Heat of formation + Delta-G solvation = -62.391355 kcal Electronic energy + Delta-G solvation = -20397.084267 eV Core-core repulsion = 17339.905006 eV Total energy + Delta-G solvation = -3057.179261 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16194 -40.16149 -36.79570 -35.82517 -34.80280 -33.58333 -31.84642 -30.66083 -28.83950 -27.69483 -26.52653 -24.58378 -23.01571 -22.39385 -21.51594 -20.55193 -18.62267 -18.11603 -17.07026 -16.94326 -16.56172 -16.47346 -16.16691 -15.66111 -15.20463 -14.91549 -14.85511 -14.34246 -14.21142 -13.99429 -13.88561 -13.51610 -13.22306 -13.19153 -12.99315 -12.85905 -12.68556 -12.53776 -12.22023 -12.15226 -12.11034 -11.65247 -11.59811 -11.46125 -11.39109 -10.66622 -10.60843 -9.95716 -9.63570 -9.41550 -8.24973 -6.35469 0.49343 0.54677 1.41194 1.41592 1.53132 1.71889 2.29533 2.47273 2.90430 3.09714 3.67710 3.79323 4.05803 4.08332 4.15729 4.21601 4.32191 4.48250 4.49343 4.49956 4.57842 4.63668 4.69224 4.80047 4.85129 4.86038 4.87216 4.96530 5.05357 5.20745 5.29012 5.29593 5.35157 5.41737 5.53651 5.58203 5.66764 5.69321 5.79037 5.84172 6.16082 6.19613 6.68240 6.78115 7.33955 7.34806 8.86890 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037968 B = 0.002778 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.291825 B =10077.492945 C =10336.880343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.035 4.035 9 H 0.078 0.922 10 C -0.143 4.143 11 C -0.124 4.124 12 C 0.505 3.495 13 O -0.582 6.582 14 N -0.721 5.721 15 C 0.141 3.859 16 C 0.023 3.977 17 C -0.548 4.548 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.965 3.035 22 H -0.272 1.272 23 H -0.279 1.279 24 H -0.267 1.267 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.410 0.590 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 22.248 10.067 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.086 4.086 8 C -0.054 4.054 9 H 0.096 0.904 10 C -0.200 4.200 11 C -0.163 4.163 12 C 0.293 3.707 13 O -0.463 6.463 14 N -0.372 5.372 15 C 0.017 3.983 16 C -0.015 4.015 17 C -0.586 4.586 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.197 1.197 23 H -0.204 1.204 24 H -0.191 1.191 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.246 0.754 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.089 22.026 10.486 24.920 hybrid contribution -0.155 -1.028 -0.612 1.206 sum 4.934 20.999 9.874 23.723 Atomic orbital electron populations 1.20872 0.90935 1.03164 1.02609 1.20016 0.96622 0.92939 1.00051 1.21280 0.94800 0.97634 1.00878 1.21435 0.94328 0.98934 0.99803 1.21405 1.00891 0.92315 1.00301 1.21199 0.93388 0.99089 1.00131 1.19724 0.94071 0.93767 1.00991 1.19849 0.99805 0.91194 0.94520 0.90396 1.21873 1.01725 1.00401 0.96035 1.21766 1.00685 0.92404 1.01454 1.21311 0.84292 0.85343 0.79768 1.90627 1.34737 1.79223 1.41718 1.46213 1.37277 1.20868 1.32861 1.21178 0.93815 0.84472 0.98815 1.19129 0.96079 0.93743 0.92518 1.21482 1.17654 1.05084 1.14385 0.92391 1.25878 0.96492 1.01820 0.95002 1.70059 1.31952 1.37068 1.17544 0.85451 0.78541 0.78433 0.78671 1.19732 1.20447 1.19092 0.91040 0.91844 0.90260 0.84590 0.84181 0.84330 0.85132 0.92037 0.92686 0.92770 0.87332 0.86743 0.75447 0.93731 0.93773 0.97403 0.97337 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.15 71.23 0.65 -1.39 16 2 C -0.10 -1.84 5.88 -19.87 -0.12 -1.96 16 3 C -0.13 -2.08 9.68 22.27 0.22 -1.87 16 4 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 5 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 6 C -0.12 -2.13 8.79 22.27 0.20 -1.94 16 7 C -0.09 -1.72 4.78 -19.86 -0.10 -1.81 16 8 C -0.03 -0.80 1.94 -11.54 -0.02 -0.82 16 9 H 0.08 1.99 5.53 -2.39 -0.01 1.98 16 10 C -0.14 -3.44 8.80 71.98 0.63 -2.80 16 11 C -0.12 -2.77 4.83 29.85 0.14 -2.62 16 12 C 0.50 16.23 7.55 87.66 0.66 16.89 16 13 O -0.58 -23.03 13.97 -3.05 -0.04 -23.07 16 14 N -0.72 -24.62 5.56 -463.04 -2.57 -27.20 16 15 C 0.14 6.09 5.61 86.38 0.48 6.57 16 16 C 0.02 1.15 5.09 29.85 0.15 1.30 16 17 C -0.55 -30.78 9.11 25.60 0.23 -30.54 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.01 0.38 5.46 84.66 0.46 0.85 16 20 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 21 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.20 6.54 -2.39 -0.02 1.19 16 27 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 28 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.13 1.99 7.18 -2.91 -0.02 1.97 16 32 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.62 5.95 -2.39 -0.01 1.60 16 35 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.11 2.07 7.28 -2.39 -0.02 2.05 16 37 H 0.41 11.91 8.47 -92.71 -0.79 11.13 16 38 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.01 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.27 14.67 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -67.02 344.40 3.96 -63.06 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.22 Total: 19.24 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.05 Total: -23.61 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -2.29 Total: -81.37 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -67.02 3.96 -63.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273003256.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.672 kcal (2) G-P(sol) polarization free energy of solvation -67.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds