Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99877 * 2 1 4 4 C 1.38211 * 119.99609 * 180.23064 * 3 2 1 5 5 C 1.38264 * 119.99918 * 359.81600 * 4 3 2 6 6 C 1.38206 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99653 * 179.79829 * 2 1 3 8 8 C 1.50706 * 120.00315 * 359.97438 * 7 2 1 9 9 H 1.08997 * 109.46510 * 353.98165 * 8 7 2 10 10 C 1.52998 * 109.46975 * 113.98876 * 8 7 2 11 11 C 1.53005 * 109.46806 * 233.98614 * 8 7 2 12 12 C 1.50700 * 109.46535 * 174.99957 * 11 8 7 13 13 O 1.21283 * 120.00084 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99783 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47220 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47165 * 179.97438 * 16 15 14 18 18 H 1.08004 * 119.99888 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99908 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99880 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99962 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46989 * 59.99601 * 21 19 17 23 23 H 1.48505 * 109.46804 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46877 * 299.99553 * 21 19 17 25 25 H 1.08999 * 109.46997 * 264.60143 * 1 2 3 26 26 H 1.09002 * 109.47021 * 24.60301 * 1 2 3 27 27 H 1.08997 * 109.46897 * 144.60025 * 1 2 3 28 28 H 1.07997 * 120.00324 * 0.07353 * 3 2 1 29 29 H 1.08003 * 120.00242 * 179.84390 * 4 3 2 30 30 H 1.08004 * 119.99734 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.99973 * 180.02562 * 6 5 4 32 32 H 1.09002 * 109.46654 * 300.00069 * 10 8 7 33 33 H 1.08995 * 109.47508 * 59.99772 * 10 8 7 34 34 H 1.08997 * 109.47104 * 180.02562 * 10 8 7 35 35 H 1.08993 * 109.47170 * 55.00466 * 11 8 7 36 36 H 1.08992 * 109.46966 * 294.99766 * 11 8 7 37 37 H 0.96990 * 119.99598 * 359.97438 * 14 12 11 38 38 H 1.09001 * 109.47352 * 299.99734 * 15 14 12 39 39 H 1.09003 * 109.47165 * 59.99811 * 15 14 12 40 40 H 1.09001 * 109.46859 * 300.00181 * 16 15 14 41 41 H 1.09004 * 109.46374 * 60.00105 * 16 15 14 42 42 H 0.96999 * 120.00064 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0042 8 6 1.4445 -2.5021 0.0094 9 1 0.3779 -2.3053 0.1168 10 6 1.6969 -3.2419 -1.3058 11 6 1.9246 -3.3635 1.1793 12 6 1.0878 -4.6143 1.2585 13 8 0.1951 -4.7984 0.4584 14 7 1.3314 -5.5284 2.2186 15 6 0.5183 -6.7445 2.2953 16 6 0.9990 -7.6065 3.4644 17 6 0.1622 -8.8573 3.5437 18 1 -0.6333 -9.0209 2.8316 19 6 0.4113 -9.7924 4.5258 20 7 1.3796 -9.5929 5.3932 21 14 -0.6255 -11.3432 4.6237 22 1 -0.4925 -12.1082 3.3578 23 1 -0.1590 -12.1797 5.7585 24 1 -2.0488 -10.9746 4.8321 25 1 -0.3633 -0.0967 1.0231 26 1 -0.3633 0.9344 -0.4279 27 1 -0.3633 -0.8377 -0.5953 28 1 1.6584 2.1326 0.0012 29 1 4.1205 2.1326 -0.0074 30 1 5.3517 -0.0002 -0.0091 31 1 4.1206 -2.1324 -0.0018 32 1 1.3550 -2.6282 -2.1392 33 1 2.7636 -3.4386 -1.4132 34 1 1.1516 -4.1856 -1.3023 35 1 1.8270 -2.8016 2.1082 36 1 2.9692 -3.6342 1.0264 37 1 2.0456 -5.3812 2.8582 38 1 -0.5264 -6.4741 2.4483 39 1 0.6160 -7.3061 1.3661 40 1 2.0437 -7.8770 3.3109 41 1 0.9017 -7.0451 4.3937 42 1 1.5547 -10.2506 6.0844 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273003258.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -62.349840 kcal Electronic energy + Delta-G solvation = -20396.623680 eV Core-core repulsion = 17339.446220 eV Total energy + Delta-G solvation = -3057.177461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16221 -40.16185 -36.79568 -35.82569 -34.80206 -33.58219 -31.84566 -30.66104 -28.83927 -27.69487 -26.52485 -24.58296 -23.01494 -22.39413 -21.51605 -20.55182 -18.61996 -18.11476 -17.06995 -16.94298 -16.56188 -16.47616 -16.16557 -15.66061 -15.20487 -14.91833 -14.85321 -14.33458 -14.21144 -13.99502 -13.88480 -13.51620 -13.22567 -13.19388 -12.98578 -12.85424 -12.68117 -12.54698 -12.21434 -12.15218 -12.11077 -11.65148 -11.59976 -11.47321 -11.39349 -10.66736 -10.60308 -9.95677 -9.63579 -9.41549 -8.24677 -6.35354 0.49355 0.54688 1.41211 1.43480 1.51524 1.71840 2.29588 2.47366 2.90445 3.09904 3.67677 3.79289 4.05802 4.08281 4.15762 4.21613 4.32157 4.48278 4.49351 4.49942 4.57848 4.63680 4.69212 4.80022 4.85099 4.86046 4.87232 4.96500 5.05341 5.20726 5.29024 5.29568 5.35120 5.41654 5.53603 5.58251 5.66749 5.69327 5.79012 5.84154 6.16114 6.19612 6.68205 6.78001 7.34025 7.34776 8.86961 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037985 B = 0.002778 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.956033 B =10078.451478 C =10339.355070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.096 4.096 3 C -0.128 4.128 4 C -0.127 4.127 5 C -0.131 4.131 6 C -0.120 4.120 7 C -0.085 4.085 8 C -0.035 4.035 9 H 0.078 0.922 10 C -0.143 4.143 11 C -0.124 4.124 12 C 0.505 3.495 13 O -0.582 6.582 14 N -0.721 5.721 15 C 0.141 3.859 16 C 0.023 3.977 17 C -0.549 4.549 18 H 0.058 0.942 19 C 0.007 3.993 20 N -0.927 5.927 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.268 1.268 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.136 0.864 29 H 0.140 0.860 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.410 0.590 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.590 22.217 -10.157 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.138 4.138 7 C -0.086 4.086 8 C -0.054 4.054 9 H 0.096 0.904 10 C -0.200 4.200 11 C -0.163 4.163 12 C 0.293 3.707 13 O -0.463 6.463 14 N -0.372 5.372 15 C 0.017 3.983 16 C -0.014 4.014 17 C -0.587 4.587 18 H 0.076 0.924 19 C -0.192 4.192 20 N -0.566 5.566 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.193 1.193 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.039 21.995 -10.568 24.917 hybrid contribution -0.153 -1.027 0.603 1.201 sum 4.887 20.968 -9.964 23.724 Atomic orbital electron populations 1.20875 0.90934 1.03160 1.02608 1.20018 0.96623 0.92939 1.00050 1.21277 0.94801 0.97634 1.00879 1.21435 0.94329 0.98934 0.99803 1.21406 1.00892 0.92315 1.00301 1.21200 0.93390 0.99090 1.00131 1.19722 0.94072 0.93766 1.00993 1.19848 0.99789 0.91202 0.94522 0.90401 1.21872 1.01738 1.00386 0.96038 1.21765 1.00675 0.92423 1.01448 1.21313 0.84336 0.85342 0.79720 1.90625 1.34523 1.79157 1.41990 1.46213 1.37005 1.20956 1.33053 1.21176 0.93819 0.84483 0.98802 1.19125 0.96057 0.93744 0.92514 1.21459 1.17480 1.05206 1.14586 0.92372 1.25875 0.96500 1.01804 0.94982 1.70050 1.31760 1.37130 1.17673 0.85510 0.79011 0.78669 0.77938 1.19329 1.20528 1.19336 0.91047 0.90258 0.91844 0.84588 0.84181 0.84328 0.85132 0.92684 0.92034 0.92772 0.87331 0.86741 0.75450 0.93782 0.93721 0.97349 0.97415 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.04 9.14 71.24 0.65 -1.39 16 2 C -0.10 -1.84 5.88 -19.86 -0.12 -1.96 16 3 C -0.13 -2.08 9.68 22.27 0.22 -1.87 16 4 C -0.13 -1.89 10.05 22.27 0.22 -1.66 16 5 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 6 C -0.12 -2.13 8.79 22.27 0.20 -1.94 16 7 C -0.09 -1.72 4.78 -19.86 -0.10 -1.81 16 8 C -0.03 -0.79 1.94 -11.54 -0.02 -0.82 16 9 H 0.08 1.99 5.54 -2.39 -0.01 1.97 16 10 C -0.14 -3.44 8.80 71.98 0.63 -2.80 16 11 C -0.12 -2.77 4.83 29.85 0.14 -2.62 16 12 C 0.50 16.24 7.55 87.66 0.66 16.90 16 13 O -0.58 -23.02 13.97 -3.04 -0.04 -23.07 16 14 N -0.72 -24.64 5.56 -463.05 -2.57 -27.21 16 15 C 0.14 6.09 5.61 86.38 0.48 6.57 16 16 C 0.02 1.17 5.09 29.85 0.15 1.32 16 17 C -0.55 -30.85 9.11 25.60 0.23 -30.62 16 18 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 19 C 0.01 0.41 5.46 84.65 0.46 0.87 16 20 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 21 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 22 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.08 1.07 8.05 -2.39 -0.02 1.05 16 27 H 0.06 1.20 6.54 -2.39 -0.02 1.19 16 28 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 29 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 30 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.13 1.99 7.18 -2.91 -0.02 1.97 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.29 7.75 -2.39 -0.02 1.27 16 34 H 0.05 1.62 5.95 -2.39 -0.01 1.60 16 35 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.11 2.07 7.28 -2.39 -0.02 2.05 16 37 H 0.41 11.92 8.47 -92.72 -0.79 11.13 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 42 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -66.99 344.42 3.96 -63.03 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.22 Total: 19.37 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.05 Total: -23.65 kcal Atomic # 7 Polarization: -79.12 SS G_CDS: -2.29 Total: -81.41 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.04 Total: -23.07 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -66.99 3.96 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273003258.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.684 kcal (2) G-P(sol) polarization free energy of solvation -66.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds