Wall clock time and date at job start Mon Mar 30 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.67149 * 2 1 4 4 C 1.54714 * 110.75194 * 236.58003 * 2 1 3 5 5 C 1.51642 * 101.94137 * 266.90771 * 4 2 1 6 6 C 1.37750 * 132.17011 * 164.38565 * 5 4 2 7 7 C 1.38355 * 119.97503 * 180.90469 * 6 5 4 8 8 C 1.38280 * 119.77085 * 359.97438 * 7 6 5 9 9 C 1.37935 * 120.35048 * 359.80970 * 8 7 6 10 10 C 1.50697 * 119.87915 * 179.73530 * 9 8 7 11 11 N 1.46899 * 109.47100 * 260.00034 * 10 9 8 12 12 C 1.46908 * 110.99840 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46763 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46973 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00386 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47001 * 89.99819 * 18 16 14 20 20 H 1.48499 * 109.47212 * 209.99975 * 18 16 14 21 21 H 1.48499 * 109.47361 * 329.99920 * 18 16 14 22 22 C 1.38883 * 107.04905 * 344.85359 * 5 4 2 23 23 O 1.36144 * 111.21804 * 358.57283 * 22 5 4 24 24 H 1.09004 * 109.47178 * 298.23038 * 1 2 3 25 25 H 1.09000 * 109.47437 * 58.23397 * 1 2 3 26 26 H 1.09002 * 109.46910 * 178.23187 * 1 2 3 27 27 H 1.08994 * 109.47420 * 181.77323 * 3 2 1 28 28 H 1.09003 * 109.46837 * 301.76847 * 3 2 1 29 29 H 1.09001 * 109.46652 * 61.76544 * 3 2 1 30 30 H 1.09002 * 110.93892 * 148.75059 * 4 2 1 31 31 H 1.08996 * 110.93238 * 25.06934 * 4 2 1 32 32 H 1.07995 * 120.00755 * 0.87775 * 6 5 4 33 33 H 1.07995 * 120.11045 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.82740 * 179.79028 * 8 7 6 35 35 H 1.08998 * 109.47476 * 20.00373 * 10 9 8 36 36 H 1.09000 * 109.47429 * 140.00297 * 10 9 8 37 37 H 1.00902 * 111.00091 * 303.95380 * 11 10 9 38 38 H 1.08994 * 109.46994 * 299.99835 * 12 11 10 39 39 H 1.08998 * 109.47129 * 60.00067 * 12 11 10 40 40 H 1.08994 * 109.47333 * 299.99753 * 13 12 11 41 41 H 1.08998 * 109.47140 * 60.00201 * 13 12 11 42 42 H 0.96998 * 120.00303 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0781 -0.7968 -1.2076 5 6 2.2642 -2.1793 -0.6128 6 6 2.4516 -3.4164 -1.1891 7 6 2.5776 -4.5391 -0.3905 8 6 2.5151 -4.4136 0.9852 9 6 2.3319 -3.1753 1.5645 10 6 2.2594 -3.0515 3.0646 11 7 0.8541 -2.9499 3.4803 12 6 0.7445 -2.8269 4.9401 13 6 -0.7304 -2.7230 5.3337 14 6 -0.8430 -2.5975 6.8313 15 1 0.0482 -2.5929 7.4412 16 6 -2.0838 -2.4898 7.4227 17 7 -3.1691 -2.4970 6.6800 18 14 -2.2233 -2.3336 9.2789 19 1 -2.1926 -0.8982 9.6585 20 1 -3.5017 -2.9383 9.7319 21 1 -1.0863 -3.0400 9.9220 22 6 2.2071 -2.0397 0.7678 23 8 2.0394 -0.7367 1.1248 24 1 -0.3634 0.4861 0.9055 25 1 -0.3634 0.5410 -0.8737 26 1 -0.3633 -1.0272 -0.0317 27 1 3.1593 1.4089 -0.0318 28 1 1.6921 1.9624 -0.8737 29 1 1.7434 1.9430 0.9054 30 1 3.0300 -0.3868 -1.5451 31 1 1.3538 -0.8173 -2.0218 32 1 2.4997 -3.5098 -2.2640 33 1 2.7242 -5.5100 -0.8400 34 1 2.6099 -5.2899 1.6094 35 1 2.7115 -3.9306 3.5240 36 1 2.7977 -2.1584 3.3820 37 1 0.3950 -2.1798 3.0174 38 1 1.1861 -3.7042 5.4127 39 1 1.2721 -1.9321 5.2700 40 1 -1.1717 -1.8456 4.8611 41 1 -1.2585 -3.6176 5.0037 42 1 -4.0420 -2.4208 7.0960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273020489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:39 Heat of formation + Delta-G solvation = -23.674550 kcal Electronic energy + Delta-G solvation = -21053.863943 eV Core-core repulsion = 17998.363569 eV Total energy + Delta-G solvation = -3055.500374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.38605 -37.92766 -35.85673 -33.93403 -33.00102 -31.70953 -30.65919 -28.71022 -27.62206 -26.64164 -25.28394 -23.27423 -22.10282 -20.76898 -20.70291 -20.29348 -17.19866 -16.30285 -16.16944 -16.01101 -15.52813 -14.87138 -14.47450 -14.24943 -14.02884 -13.84520 -13.49753 -13.28027 -12.95422 -12.64887 -12.51947 -12.26493 -12.14633 -12.08112 -12.00877 -11.79929 -11.55519 -11.09266 -10.98455 -10.91260 -10.84529 -10.58740 -10.46677 -9.93815 -9.36562 -9.12963 -8.70297 -8.31167 -8.08995 -7.69313 -5.95589 -3.97957 1.31693 1.39530 3.16948 3.34777 3.40653 3.44401 3.70896 4.27906 4.34592 4.48329 4.64547 4.77315 4.85381 4.98491 5.13748 5.17042 5.28030 5.33808 5.40257 5.42971 5.44200 5.47690 5.61271 5.65032 5.72938 5.80818 5.86186 5.94881 6.09144 6.15394 6.35179 6.40737 6.44116 6.47989 6.60524 6.71936 7.04176 7.25138 7.54632 7.79180 7.88178 8.02614 8.14315 8.48621 9.09340 9.65486 11.15933 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003843 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.164332 B = 7284.374906 C = 8075.945075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.102 3.898 3 C -0.141 4.141 4 C -0.098 4.098 5 C -0.178 4.178 6 C -0.077 4.077 7 C -0.151 4.151 8 C -0.070 4.070 9 C -0.090 4.090 10 C 0.100 3.900 11 N -0.684 5.684 12 C 0.066 3.934 13 C 0.026 3.974 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.892 3.108 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.115 3.885 23 O -0.294 6.294 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.034 0.966 37 H 0.337 0.663 38 H 0.058 0.942 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.025 0.975 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.208 3.014 -19.189 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.064 3.936 3 C -0.198 4.198 4 C -0.135 4.135 5 C -0.179 4.179 6 C -0.095 4.095 7 C -0.169 4.169 8 C -0.088 4.088 9 C -0.091 4.091 10 C -0.029 4.029 11 N -0.315 5.315 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.720 3.280 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.069 3.931 23 O -0.208 6.208 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.154 0.846 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.952 2.472 -18.940 22.532 hybrid contribution 0.055 0.975 0.989 1.390 sum 12.007 3.447 -17.951 21.869 Atomic orbital electron populations 1.22210 0.93149 1.03551 1.03303 1.22734 0.94577 0.92736 0.83560 1.21830 1.01701 0.92945 1.03335 1.21847 1.02173 0.91389 0.98131 1.20702 1.07987 0.95343 0.93880 1.20227 0.99108 0.90693 0.99514 1.20981 1.04092 0.98263 0.93554 1.20809 0.97310 0.95928 0.94773 1.19181 1.04258 0.89984 0.95643 1.20774 0.91658 1.00777 0.89690 1.60706 1.11625 1.50231 1.08917 1.22174 1.01161 0.98404 0.84506 1.19061 0.88880 0.97585 0.95629 1.21188 0.92301 1.50176 0.92238 0.92754 1.24997 0.95886 0.95386 0.98078 1.69975 0.97679 1.50573 1.35091 0.86592 0.77450 0.78156 0.85778 1.20726 1.21207 1.19872 1.19377 0.96462 0.84809 0.92470 1.86914 1.79836 1.16278 1.37810 0.90869 0.90906 0.91518 0.91631 0.90454 0.91039 0.89476 0.89297 0.86240 0.85669 0.85090 0.90584 0.94841 0.84572 0.92328 0.96671 0.96878 0.95660 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.84 37.16 0.33 -1.47 16 2 C 0.10 1.13 1.26 -89.72 -0.11 1.02 16 3 C -0.14 -1.24 8.96 37.16 0.33 -0.91 16 4 C -0.10 -0.97 6.19 -26.52 -0.16 -1.14 16 5 C -0.18 -2.23 6.27 -104.10 -0.65 -2.88 16 6 C -0.08 -0.86 10.03 -39.72 -0.40 -1.26 16 7 C -0.15 -1.70 10.07 -39.52 -0.40 -2.10 16 8 C -0.07 -0.91 9.63 -39.68 -0.38 -1.29 16 9 C -0.09 -1.35 5.42 -104.35 -0.57 -1.92 16 10 C 0.10 1.66 5.78 -4.98 -0.03 1.63 16 11 N -0.68 -13.48 6.49 -115.05 -0.75 -14.23 16 12 C 0.07 1.47 5.62 -3.82 -0.02 1.45 16 13 C 0.03 0.70 5.23 -27.88 -0.15 0.56 16 14 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 17 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.11 1.70 6.65 -38.96 -0.26 1.44 16 23 O -0.29 -4.38 10.48 -20.20 -0.21 -4.59 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.83 8.12 -51.93 -0.42 0.40 16 27 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 31 H 0.09 0.73 7.92 -51.93 -0.41 0.32 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.13 1.52 8.02 -52.48 -0.42 1.10 16 35 H 0.08 1.18 7.99 -51.93 -0.41 0.76 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.34 6.76 8.71 -39.29 -0.34 6.42 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 347.86 15.07 5.24 5.24 Total: -1.00 -32.22 347.86 -9.91 -42.13 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -7.04 Total: 1.93 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -2.88 Total: -20.78 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: -0.01 Total: -40.99 kcal Atomic # 8 Polarization: -4.38 SS G_CDS: -0.21 Total: -4.59 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.22 -9.91 -42.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273020489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.459 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds