Wall clock time and date at job start Mon Mar 30 2020 01:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.67149 * 2 1 4 4 C 1.54714 * 110.75194 * 236.58003 * 2 1 3 5 5 C 1.51642 * 101.94137 * 266.90771 * 4 2 1 6 6 C 1.37750 * 132.17011 * 164.38565 * 5 4 2 7 7 C 1.38355 * 119.97503 * 180.90469 * 6 5 4 8 8 C 1.38280 * 119.77085 * 359.97438 * 7 6 5 9 9 C 1.37935 * 120.35048 * 359.80970 * 8 7 6 10 10 C 1.50697 * 119.87915 * 179.73530 * 9 8 7 11 11 N 1.46899 * 109.47100 * 260.00034 * 10 9 8 12 12 C 1.46908 * 110.99840 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46763 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46973 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99637 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99790 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00386 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99666 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47001 * 89.99819 * 18 16 14 20 20 H 1.48499 * 109.47212 * 209.99975 * 18 16 14 21 21 H 1.48499 * 109.47361 * 329.99920 * 18 16 14 22 22 C 1.38883 * 107.04905 * 344.85359 * 5 4 2 23 23 O 1.36144 * 111.21804 * 358.57283 * 22 5 4 24 24 H 1.09004 * 109.47178 * 298.23038 * 1 2 3 25 25 H 1.09000 * 109.47437 * 58.23397 * 1 2 3 26 26 H 1.09002 * 109.46910 * 178.23187 * 1 2 3 27 27 H 1.08994 * 109.47420 * 181.77323 * 3 2 1 28 28 H 1.09003 * 109.46837 * 301.76847 * 3 2 1 29 29 H 1.09001 * 109.46652 * 61.76544 * 3 2 1 30 30 H 1.09002 * 110.93892 * 148.75059 * 4 2 1 31 31 H 1.08996 * 110.93238 * 25.06934 * 4 2 1 32 32 H 1.07995 * 120.00755 * 0.87775 * 6 5 4 33 33 H 1.07995 * 120.11045 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.82740 * 179.79028 * 8 7 6 35 35 H 1.08998 * 109.47476 * 20.00373 * 10 9 8 36 36 H 1.09000 * 109.47429 * 140.00297 * 10 9 8 37 37 H 1.00902 * 111.00091 * 303.95380 * 11 10 9 38 38 H 1.08994 * 109.46994 * 299.99835 * 12 11 10 39 39 H 1.08998 * 109.47129 * 60.00067 * 12 11 10 40 40 H 1.08994 * 109.47333 * 299.99753 * 13 12 11 41 41 H 1.08998 * 109.47140 * 60.00201 * 13 12 11 42 42 H 0.96998 * 120.00303 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0781 -0.7968 -1.2076 5 6 2.2642 -2.1793 -0.6128 6 6 2.4516 -3.4164 -1.1891 7 6 2.5776 -4.5391 -0.3905 8 6 2.5151 -4.4136 0.9852 9 6 2.3319 -3.1753 1.5645 10 6 2.2594 -3.0515 3.0646 11 7 0.8541 -2.9499 3.4803 12 6 0.7445 -2.8269 4.9401 13 6 -0.7304 -2.7230 5.3337 14 6 -0.8430 -2.5975 6.8313 15 1 0.0482 -2.5929 7.4412 16 6 -2.0838 -2.4898 7.4227 17 7 -3.1691 -2.4970 6.6800 18 14 -2.2233 -2.3336 9.2789 19 1 -2.1926 -0.8982 9.6585 20 1 -3.5017 -2.9383 9.7319 21 1 -1.0863 -3.0400 9.9220 22 6 2.2071 -2.0397 0.7678 23 8 2.0394 -0.7367 1.1248 24 1 -0.3634 0.4861 0.9055 25 1 -0.3634 0.5410 -0.8737 26 1 -0.3633 -1.0272 -0.0317 27 1 3.1593 1.4089 -0.0318 28 1 1.6921 1.9624 -0.8737 29 1 1.7434 1.9430 0.9054 30 1 3.0300 -0.3868 -1.5451 31 1 1.3538 -0.8173 -2.0218 32 1 2.4997 -3.5098 -2.2640 33 1 2.7242 -5.5100 -0.8400 34 1 2.6099 -5.2899 1.6094 35 1 2.7115 -3.9306 3.5240 36 1 2.7977 -2.1584 3.3820 37 1 0.3950 -2.1798 3.0174 38 1 1.1861 -3.7042 5.4127 39 1 1.2721 -1.9321 5.2700 40 1 -1.1717 -1.8456 4.8611 41 1 -1.2585 -3.6176 5.0037 42 1 -4.0420 -2.4208 7.0960 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273020489.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:39 Heat of formation + Delta-G solvation = -43.346571 kcal Electronic energy + Delta-G solvation = -21054.716986 eV Core-core repulsion = 17998.363569 eV Total energy + Delta-G solvation = -3056.353417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31720 -38.94604 -37.41350 -35.29169 -34.64103 -32.98727 -31.84561 -30.38191 -28.42053 -27.48387 -26.96300 -25.00704 -23.07390 -22.51494 -21.62877 -21.54298 -18.53966 -18.12990 -17.19615 -17.09575 -16.71593 -16.45653 -16.03283 -15.54604 -15.33021 -14.93946 -14.69599 -14.32593 -14.20075 -13.99779 -13.67452 -13.52897 -13.43399 -13.16536 -12.93732 -12.90720 -12.87493 -12.69538 -12.52377 -12.41537 -11.98736 -11.91626 -11.77143 -11.55251 -11.42163 -11.26297 -10.58645 -9.74201 -9.35235 -9.01552 -8.21734 -6.34094 0.35206 0.42807 1.39217 1.41447 1.52791 2.28036 2.39543 2.73777 3.11340 3.43928 3.46359 3.57498 3.83564 3.86442 3.98931 4.05116 4.26255 4.35566 4.45636 4.51514 4.54287 4.61134 4.65006 4.65717 4.70387 4.73137 4.80815 4.86886 5.00834 5.01582 5.08782 5.22134 5.25080 5.39887 5.44462 5.49537 5.61140 5.62599 5.74712 5.81128 6.08033 6.20655 6.31050 6.40325 6.82190 7.35272 8.90731 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021061 B = 0.003843 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.164332 B = 7284.374906 C = 8075.945075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.090 3.910 3 C -0.137 4.137 4 C -0.090 4.090 5 C -0.184 4.184 6 C -0.074 4.074 7 C -0.147 4.147 8 C -0.081 4.081 9 C -0.118 4.118 10 C 0.106 3.894 11 N -0.686 5.686 12 C 0.083 3.917 13 C 0.034 3.966 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.262 1.262 22 C 0.089 3.911 23 O -0.324 6.324 24 H 0.054 0.946 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.024 0.976 37 H 0.332 0.668 38 H 0.064 0.936 39 H 0.014 0.986 40 H -0.014 1.014 41 H -0.005 1.005 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.218 2.956 -20.429 24.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.053 3.947 3 C -0.194 4.194 4 C -0.127 4.127 5 C -0.185 4.185 6 C -0.092 4.092 7 C -0.165 4.165 8 C -0.099 4.099 9 C -0.119 4.119 10 C -0.022 4.022 11 N -0.316 5.316 12 C -0.045 4.045 13 C -0.003 4.003 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.197 4.197 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.186 1.186 22 C 0.043 3.957 23 O -0.239 6.239 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.171 0.829 33 H 0.174 0.826 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.042 0.958 37 H 0.148 0.852 38 H 0.082 0.918 39 H 0.032 0.968 40 H 0.005 0.995 41 H 0.014 0.986 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.983 2.412 -20.194 24.128 hybrid contribution -0.268 0.983 1.276 1.633 sum 12.715 3.395 -18.918 23.045 Atomic orbital electron populations 1.22215 0.93525 1.02416 1.03834 1.23066 0.94479 0.93802 0.83385 1.21860 1.01879 0.91582 1.04093 1.21899 1.03522 0.89489 0.97790 1.21107 1.07259 0.97086 0.93063 1.20670 0.97379 0.89943 1.01254 1.21365 1.02582 0.99844 0.92721 1.21031 0.97398 0.95386 0.96101 1.19190 1.06851 0.91381 0.94480 1.20745 0.89268 1.00635 0.91579 1.60662 1.14068 1.49859 1.07032 1.21826 0.97735 0.98529 0.86459 1.18897 0.91520 0.94817 0.95082 1.21594 0.92968 1.50671 0.93227 0.92081 1.26003 0.95311 0.94522 1.03856 1.70115 0.98388 1.51089 1.37614 0.85379 0.77882 0.78615 0.78739 1.19691 1.20493 1.18624 1.19645 0.97492 0.84748 0.93803 1.86881 1.80279 1.16779 1.39994 0.92694 0.87823 0.93572 0.91360 0.87529 0.92282 0.87767 0.87094 0.82940 0.82642 0.84214 0.89623 0.95806 0.85168 0.91760 0.96769 0.99529 0.98638 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.84 71.98 0.64 -2.92 16 2 C 0.09 1.95 1.26 -10.21 -0.01 1.93 16 3 C -0.14 -2.25 8.96 71.98 0.65 -1.60 16 4 C -0.09 -1.58 6.19 30.73 0.19 -1.39 16 5 C -0.18 -4.31 6.27 -19.52 -0.12 -4.44 16 6 C -0.07 -1.45 10.03 22.18 0.22 -1.23 16 7 C -0.15 -2.97 10.07 22.31 0.22 -2.75 16 8 C -0.08 -2.05 9.63 22.21 0.21 -1.83 16 9 C -0.12 -3.62 5.42 -19.69 -0.11 -3.73 16 10 C 0.11 3.64 5.78 85.56 0.49 4.14 16 11 N -0.69 -28.22 6.49 -517.92 -3.36 -31.59 16 12 C 0.08 3.86 5.62 86.30 0.49 4.34 16 13 C 0.03 1.95 5.23 29.85 0.16 2.11 16 14 C -0.55 -32.55 9.11 25.60 0.23 -32.32 16 15 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 16 C 0.00 0.06 5.46 84.65 0.46 0.52 16 17 N -0.93 -58.56 13.29 21.44 0.28 -58.28 16 18 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.09 2.65 6.65 22.67 0.15 2.80 16 23 O -0.32 -9.95 10.48 -95.19 -1.00 -10.94 16 24 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.05 1.17 8.12 -2.39 -0.02 1.15 16 27 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.47 7.91 -2.39 -0.02 1.46 16 31 H 0.11 1.44 7.92 -2.39 -0.02 1.42 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.14 3.14 8.02 -2.91 -0.02 3.12 16 35 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.33 14.17 8.71 -89.69 -0.78 13.39 16 38 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 40 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 41 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -71.63 347.86 2.03 -69.60 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.21 Total: 20.16 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 3.87 Total: -36.36 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -3.08 Total: -89.86 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.00 Total: -10.94 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -71.63 2.03 -69.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273020489.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.257 kcal (2) G-P(sol) polarization free energy of solvation -71.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds