Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47059 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99814 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00437 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47233 * 120.00145 * 17 15 13 20 20 H 1.48501 * 109.47363 * 240.00627 * 17 15 13 21 21 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 22 22 C 1.50700 * 120.00162 * 179.72779 * 21 6 4 23 23 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46915 * 90.00200 * 1 2 3 25 25 H 1.09000 * 109.47189 * 209.99952 * 1 2 3 26 26 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 27 27 H 1.07992 * 119.99773 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47047 * 269.97521 * 5 4 3 29 29 H 1.08992 * 109.47301 * 29.97107 * 5 4 3 30 30 H 1.09004 * 109.47311 * 149.97670 * 5 4 3 31 31 H 1.09001 * 109.46665 * 330.00035 * 7 6 4 32 32 H 1.09000 * 109.47722 * 210.00366 * 7 6 4 33 33 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.47366 * 299.99598 * 11 10 8 35 35 H 1.08992 * 109.47635 * 60.00246 * 11 10 8 36 36 H 1.09004 * 109.46832 * 299.99894 * 12 11 10 37 37 H 1.09001 * 109.47420 * 59.99456 * 12 11 10 38 38 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47014 * 89.99702 * 22 21 6 40 40 H 1.08996 * 109.47283 * 209.99818 * 22 21 6 41 41 H 1.09004 * 109.46914 * 330.00169 * 22 21 6 42 42 H 1.07999 * 120.00384 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0002 0.0028 8 6 6.2800 0.0005 1.4240 9 8 5.4911 0.0006 2.3452 10 7 7.6048 0.0010 1.6713 11 6 8.0920 0.0011 3.0529 12 6 9.6221 0.0024 3.0541 13 6 10.1233 0.0019 4.4753 14 1 9.4209 0.0011 5.2956 15 6 11.4787 0.0023 4.7282 16 7 12.3341 0.0037 3.7293 17 14 12.1000 0.0024 6.4899 18 1 10.9442 0.0013 7.4224 19 1 12.9253 -1.2098 6.7237 20 1 12.9243 1.2152 6.7240 21 6 3.5805 -1.1972 -0.0036 22 6 4.3339 -2.5023 -0.0087 23 6 2.1981 -1.1972 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6583 2.1324 -0.0004 28 1 4.5165 2.8168 -1.0264 29 1 3.7447 3.2618 0.5144 30 1 5.2861 2.3718 0.5157 31 1 6.1424 0.8896 -0.5112 32 1 6.1424 -0.8904 -0.5104 33 1 8.2357 0.0014 0.9345 34 1 7.7280 0.8909 3.5665 35 1 7.7287 -0.8890 3.5663 36 1 9.9865 -0.8872 2.5404 37 1 9.9851 0.8928 2.5407 38 1 13.2876 0.0044 3.9073 39 1 4.5152 -2.8212 1.0178 40 1 3.7451 -3.2598 -0.5258 41 1 5.2866 -2.3699 -0.5215 42 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273028609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = -46.218421 kcal Electronic energy + Delta-G solvation = -20646.234573 eV Core-core repulsion = 17589.756623 eV Total energy + Delta-G solvation = -3056.477950 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.25913 -38.70474 -34.92182 -34.22259 -33.59880 -32.83400 -30.45412 -29.06989 -27.98427 -26.73836 -25.60973 -24.22247 -21.14117 -20.78919 -20.50091 -19.59804 -16.81318 -16.44002 -16.29741 -15.95132 -14.79276 -14.78155 -14.48837 -14.32893 -14.12437 -13.43574 -13.33499 -13.21461 -12.98644 -12.91221 -12.76520 -12.66120 -12.60882 -12.29027 -11.90465 -11.54095 -11.21763 -11.19302 -11.04813 -10.87468 -10.83333 -10.62164 -10.32703 -9.77936 -9.46650 -9.18917 -8.53518 -8.49949 -8.34346 -8.34115 -6.10189 -4.12846 1.34606 1.42458 3.05507 3.27810 3.35353 3.40372 3.55238 3.95154 4.42092 4.63264 4.70968 4.79882 4.92663 5.04935 5.22842 5.26977 5.29493 5.32014 5.38847 5.43411 5.44063 5.53434 5.60522 5.66479 5.71746 5.74513 5.87595 5.90530 6.20342 6.26297 6.35731 6.36386 6.52882 6.57110 6.71476 6.74715 6.95034 7.07033 7.51863 7.61453 7.88475 8.04888 8.27967 8.70704 8.93607 9.52128 11.01457 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033752 B = 0.003083 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.393023 B = 9080.557262 C = 9202.179154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.064 4.064 5 C -0.117 4.117 6 C -0.065 4.065 7 C -0.111 4.111 8 C 0.507 3.493 9 O -0.540 6.540 10 N -0.725 5.725 11 C 0.123 3.877 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.064 4.064 22 C -0.119 4.119 23 C -0.127 4.127 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.397 0.603 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.261 0.739 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.662 -0.025 -12.864 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.064 4.064 5 C -0.174 4.174 6 C -0.066 4.066 7 C -0.150 4.150 8 C 0.292 3.708 9 O -0.417 6.417 10 N -0.376 5.376 11 C 0.000 4.000 12 C -0.025 4.025 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.064 4.064 22 C -0.175 4.175 23 C -0.145 4.145 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.230 0.770 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.032 -0.024 -12.203 22.608 hybrid contribution 0.840 0.003 0.623 1.045 sum -18.192 -0.021 -11.580 21.565 Atomic orbital electron populations 1.20756 0.91462 1.02612 1.01967 1.19813 0.95756 0.93163 0.99794 1.20775 0.93292 0.97371 1.03104 1.19658 0.93644 0.94656 0.98408 1.20832 1.00481 0.94124 1.01943 1.18965 0.93533 0.92460 1.01612 1.20790 0.93321 1.05011 0.95925 1.20394 0.82764 0.76979 0.90672 1.90694 1.55296 1.49485 1.46250 1.46347 1.06284 1.74250 1.10691 1.21690 0.97895 1.00669 0.79715 1.19325 0.87220 0.97807 0.98138 1.21098 0.91780 1.51138 0.91915 0.92231 1.24998 0.96917 0.95005 0.97395 1.69962 1.02099 1.50535 1.30750 0.86466 0.78899 0.77625 0.84644 1.19575 1.20924 1.20919 1.19658 0.93656 0.94668 0.98415 1.20872 0.99853 0.93990 1.02797 1.20770 0.93280 0.97369 1.03110 0.91440 0.91714 0.91715 0.86393 0.91180 0.91501 0.91324 0.88207 0.88019 0.76981 0.92708 0.92700 0.95961 0.95959 0.92901 0.90763 0.91691 0.91345 0.86392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.13 -1.54 9.36 -39.59 -0.37 -1.91 16 4 C -0.06 -0.83 5.88 -104.63 -0.62 -1.45 16 5 C -0.12 -1.32 9.19 36.00 0.33 -0.98 16 6 C -0.07 -0.89 4.37 -104.62 -0.46 -1.35 16 7 C -0.11 -1.39 4.75 -29.03 -0.14 -1.53 16 8 C 0.51 8.58 7.42 -10.98 -0.08 8.50 16 9 O -0.54 -11.37 16.03 5.56 0.09 -11.28 16 10 N -0.73 -12.55 5.56 -60.30 -0.33 -12.88 16 11 C 0.12 2.63 5.61 -4.04 -0.02 2.60 16 12 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 13 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 14 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 17 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 16 18 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C -0.06 -0.83 5.88 -104.62 -0.62 -1.45 16 22 C -0.12 -1.32 9.60 36.01 0.35 -0.98 16 23 C -0.13 -1.54 9.36 -39.58 -0.37 -1.91 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.07 0.85 6.37 -51.93 -0.33 0.52 16 31 H 0.10 1.05 6.70 -51.93 -0.35 0.70 16 32 H 0.10 1.06 5.94 -51.93 -0.31 0.76 16 33 H 0.40 5.84 8.47 -40.82 -0.35 5.49 16 34 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.07 0.69 5.94 -51.93 -0.31 0.38 16 42 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -32.72 347.63 -8.76 -41.48 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.67 Total: 2.15 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.80 Total: -15.72 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.40 Total: -38.27 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.72 -8.76 -41.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273028609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.739 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds