Wall clock time and date at job start Mon Mar 30 2020 01:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38236 * 120.00082 * 2 1 4 4 C 1.38228 * 119.99847 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.99983 * 180.02562 * 4 3 2 6 6 C 1.38236 * 120.00163 * 359.97438 * 4 3 2 7 7 C 1.50698 * 120.00393 * 180.02562 * 6 4 3 8 8 C 1.50706 * 109.47294 * 89.99654 * 7 6 4 9 9 O 1.21279 * 119.99507 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00020 * 180.02562 * 8 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47059 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47353 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00290 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99814 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00437 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00014 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46883 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47233 * 120.00145 * 17 15 13 20 20 H 1.48501 * 109.47363 * 240.00627 * 17 15 13 21 21 C 1.38237 * 119.99938 * 0.27676 * 6 4 3 22 22 C 1.50700 * 120.00162 * 179.72779 * 21 6 4 23 23 C 1.38232 * 119.99638 * 179.97438 * 2 1 3 24 24 H 1.09002 * 109.46915 * 90.00200 * 1 2 3 25 25 H 1.09000 * 109.47189 * 209.99952 * 1 2 3 26 26 H 1.08996 * 109.46972 * 330.00543 * 1 2 3 27 27 H 1.07992 * 119.99773 * 359.97438 * 3 2 1 28 28 H 1.09003 * 109.47047 * 269.97521 * 5 4 3 29 29 H 1.08992 * 109.47301 * 29.97107 * 5 4 3 30 30 H 1.09004 * 109.47311 * 149.97670 * 5 4 3 31 31 H 1.09001 * 109.46665 * 330.00035 * 7 6 4 32 32 H 1.09000 * 109.47722 * 210.00366 * 7 6 4 33 33 H 0.96994 * 119.99756 * 0.02562 * 10 8 7 34 34 H 1.08996 * 109.47366 * 299.99598 * 11 10 8 35 35 H 1.08992 * 109.47635 * 60.00246 * 11 10 8 36 36 H 1.09004 * 109.46832 * 299.99894 * 12 11 10 37 37 H 1.09001 * 109.47420 * 59.99456 * 12 11 10 38 38 H 0.96999 * 120.00397 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.47014 * 89.99702 * 22 21 6 40 40 H 1.08996 * 109.47283 * 209.99818 * 22 21 6 41 41 H 1.09004 * 109.46914 * 330.00169 * 22 21 6 42 42 H 1.07999 * 120.00384 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3341 2.5021 0.0011 6 6 4.2717 -0.0001 0.0016 7 6 5.7787 -0.0002 0.0028 8 6 6.2800 0.0005 1.4240 9 8 5.4911 0.0006 2.3452 10 7 7.6048 0.0010 1.6713 11 6 8.0920 0.0011 3.0529 12 6 9.6221 0.0024 3.0541 13 6 10.1233 0.0019 4.4753 14 1 9.4209 0.0011 5.2956 15 6 11.4787 0.0023 4.7282 16 7 12.3341 0.0037 3.7293 17 14 12.1000 0.0024 6.4899 18 1 10.9442 0.0013 7.4224 19 1 12.9253 -1.2098 6.7237 20 1 12.9243 1.2152 6.7240 21 6 3.5805 -1.1972 -0.0036 22 6 4.3339 -2.5023 -0.0087 23 6 2.1981 -1.1972 0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 1.6583 2.1324 -0.0004 28 1 4.5165 2.8168 -1.0264 29 1 3.7447 3.2618 0.5144 30 1 5.2861 2.3718 0.5157 31 1 6.1424 0.8896 -0.5112 32 1 6.1424 -0.8904 -0.5104 33 1 8.2357 0.0014 0.9345 34 1 7.7280 0.8909 3.5665 35 1 7.7287 -0.8890 3.5663 36 1 9.9865 -0.8872 2.5404 37 1 9.9851 0.8928 2.5407 38 1 13.2876 0.0044 3.9073 39 1 4.5152 -2.8212 1.0178 40 1 3.7451 -3.2598 -0.5258 41 1 5.2866 -2.3699 -0.5215 42 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273028609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:01 Heat of formation + Delta-G solvation = -65.135483 kcal Electronic energy + Delta-G solvation = -20647.054878 eV Core-core repulsion = 17589.756623 eV Total energy + Delta-G solvation = -3057.298255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33402 -39.96447 -36.60262 -35.20206 -34.80578 -34.48394 -31.96382 -30.43883 -28.80864 -27.60629 -27.08152 -25.68804 -22.96127 -21.80713 -21.68293 -20.68440 -18.61286 -17.93252 -17.41594 -17.13351 -16.46763 -16.24493 -16.08057 -15.23248 -15.14032 -14.90890 -14.45646 -14.32266 -14.08360 -13.93332 -13.85523 -13.64138 -13.58046 -13.48011 -13.21576 -12.97666 -12.73214 -12.53481 -12.44881 -12.22708 -12.05960 -11.77132 -11.71575 -11.62926 -11.45182 -10.84824 -10.61733 -9.99476 -9.40844 -9.27246 -8.25297 -6.35610 0.41621 0.50781 1.39873 1.41007 1.54027 1.70064 2.28050 2.45248 2.86809 3.09393 3.68013 3.85297 3.98577 3.99877 4.11936 4.17615 4.39994 4.46288 4.48762 4.52858 4.56970 4.61845 4.70502 4.76688 4.80393 4.80964 4.84978 4.86920 4.98809 5.03647 5.10679 5.30431 5.38152 5.39445 5.50163 5.57968 5.62479 5.69986 5.78529 5.78793 6.15864 6.19414 6.67358 6.77851 7.33644 7.33809 8.86681 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.033752 B = 0.003083 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.393023 B = 9080.557262 C = 9202.179154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.091 4.091 3 C -0.141 4.141 4 C -0.080 4.080 5 C -0.115 4.115 6 C -0.092 4.092 7 C -0.099 4.099 8 C 0.509 3.491 9 O -0.583 6.583 10 N -0.719 5.719 11 C 0.142 3.858 12 C 0.024 3.976 13 C -0.547 4.547 14 H 0.056 0.944 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.267 1.267 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.080 4.080 22 C -0.117 4.117 23 C -0.141 4.141 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.135 0.865 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.411 0.589 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.055 0.945 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.503 0.007 -13.487 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.080 4.080 5 C -0.172 4.172 6 C -0.092 4.092 7 C -0.138 4.138 8 C 0.297 3.703 9 O -0.463 6.463 10 N -0.371 5.371 11 C 0.018 3.982 12 C -0.014 4.014 13 C -0.585 4.585 14 H 0.074 0.926 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.191 1.191 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.080 4.080 22 C -0.174 4.174 23 C -0.159 4.159 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.153 0.847 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.144 0.856 33 H 0.247 0.753 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.870 0.008 -12.861 23.669 hybrid contribution 1.036 -0.003 0.783 1.299 sum -18.834 0.006 -12.077 22.374 Atomic orbital electron populations 1.20804 0.89272 1.03344 1.03156 1.20237 0.97507 0.92861 0.98474 1.21080 0.93238 0.98462 1.03129 1.19986 0.94437 0.95200 0.98373 1.20845 0.99494 0.93634 1.03193 1.19175 0.93934 0.93064 1.03042 1.20770 0.93081 1.07266 0.92693 1.21135 0.81763 0.75180 0.92207 1.90672 1.56222 1.51293 1.48108 1.46163 1.07146 1.74381 1.09410 1.21164 0.95593 0.99432 0.81965 1.19128 0.89226 0.96416 0.96606 1.21496 0.92338 1.51479 0.93222 0.92564 1.25855 0.97089 0.94410 1.01749 1.70055 1.02559 1.51047 1.32880 0.85414 0.78346 0.77976 0.79418 1.19115 1.20129 1.20125 1.19982 0.94441 0.95201 0.98418 1.20886 1.00614 0.93865 1.01993 1.21086 0.93253 0.98464 1.03117 0.89906 0.90999 0.90991 0.84711 0.88963 0.90975 0.92913 0.85866 0.85637 0.75281 0.93974 0.93954 0.97205 0.97207 0.92496 0.92596 0.89656 0.90407 0.84719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.89 16 2 C -0.09 -1.97 5.88 -19.86 -0.12 -2.09 16 3 C -0.14 -3.24 9.36 22.27 0.21 -3.03 16 4 C -0.08 -2.02 5.88 -19.87 -0.12 -2.13 16 5 C -0.12 -2.45 9.19 71.23 0.65 -1.80 16 6 C -0.09 -2.42 4.37 -19.87 -0.09 -2.51 16 7 C -0.10 -2.36 4.75 29.10 0.14 -2.22 16 8 C 0.51 17.12 7.42 87.66 0.65 17.77 16 9 O -0.58 -24.90 16.03 -3.02 -0.05 -24.94 16 10 N -0.72 -24.80 5.56 -463.07 -2.57 -27.38 16 11 C 0.14 6.21 5.61 86.38 0.48 6.70 16 12 C 0.02 1.20 5.09 29.85 0.15 1.35 16 13 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 14 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 17 Si 0.96 43.81 29.54 68.60 2.03 45.83 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 21 C -0.08 -2.03 5.88 -19.86 -0.12 -2.15 16 22 C -0.12 -2.50 9.60 71.24 0.68 -1.81 16 23 C -0.14 -3.24 9.36 22.27 0.21 -3.04 16 24 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 26 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 27 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.05 1.28 6.37 -2.39 -0.02 1.26 16 31 H 0.12 2.35 6.70 -2.39 -0.02 2.33 16 32 H 0.13 2.37 5.94 -2.39 -0.01 2.35 16 33 H 0.41 11.81 8.47 -92.71 -0.79 11.03 16 34 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.27 14.59 8.31 -92.71 -0.77 13.81 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.08 1.41 8.09 -2.39 -0.02 1.39 16 41 H 0.08 1.45 5.94 -2.39 -0.01 1.43 16 42 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -70.51 347.63 4.06 -66.44 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.22 Total: 19.51 kcal Atomic # 6 Polarization: -29.68 SS G_CDS: 4.15 Total: -25.52 kcal Atomic # 7 Polarization: -79.03 SS G_CDS: -2.29 Total: -81.32 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -70.51 4.06 -66.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273028609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.308 kcal (2) G-P(sol) polarization free energy of solvation -70.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds