Wall clock time and date at job start Mon Mar 30 2020 01:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.66900 * 2 1 4 4 C 1.54714 * 110.74842 * 236.58625 * 2 1 3 5 5 C 1.51647 * 101.91590 * 266.98906 * 4 2 1 6 6 C 1.37743 * 132.17206 * 164.29060 * 5 4 2 7 7 C 1.38349 * 119.97821 * 180.31689 * 6 5 4 8 8 C 1.50705 * 120.11873 * 180.19830 * 7 6 5 9 9 N 1.46894 * 109.46995 * 270.22620 * 8 7 6 10 10 C 1.46908 * 110.99755 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47137 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99537 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99794 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47227 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47067 * 119.99702 * 16 14 12 19 19 H 1.48499 * 109.47426 * 239.99877 * 16 14 12 20 20 C 1.38286 * 119.76566 * 0.42800 * 7 6 5 21 21 C 1.37934 * 120.35095 * 359.34067 * 20 7 6 22 22 C 1.38888 * 107.03971 * 344.49663 * 5 4 2 23 23 O 1.36134 * 111.24075 * 359.10415 * 22 5 4 24 24 H 1.08996 * 109.46724 * 298.23845 * 1 2 3 25 25 H 1.08994 * 109.46687 * 58.23687 * 1 2 3 26 26 H 1.08996 * 109.47235 * 178.23515 * 1 2 3 27 27 H 1.08996 * 109.47330 * 181.75938 * 3 2 1 28 28 H 1.09003 * 109.47040 * 301.76402 * 3 2 1 29 29 H 1.09002 * 109.46866 * 61.75802 * 3 2 1 30 30 H 1.09002 * 110.93912 * 25.13880 * 4 2 1 31 31 H 1.08997 * 110.94291 * 148.83380 * 4 2 1 32 32 H 1.08005 * 120.00903 * 0.51242 * 6 5 4 33 33 H 1.09000 * 109.46872 * 30.22738 * 8 7 6 34 34 H 1.09002 * 109.46786 * 150.22593 * 8 7 6 35 35 H 1.00901 * 111.00324 * 303.95363 * 9 8 7 36 36 H 1.08998 * 109.46633 * 299.99770 * 10 9 8 37 37 H 1.08996 * 109.47313 * 59.99926 * 10 9 8 38 38 H 1.09000 * 109.46897 * 300.00165 * 11 10 9 39 39 H 1.09005 * 109.46827 * 59.99787 * 11 10 9 40 40 H 0.97004 * 119.99551 * 179.97438 * 15 14 12 41 41 H 1.08002 * 119.82806 * 179.62686 * 20 7 6 42 42 H 1.07997 * 119.87774 * 180.35239 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0781 -0.7967 -1.2077 5 6 2.2619 -2.1796 -0.6131 6 6 2.4466 -3.4170 -1.1894 7 6 2.5831 -4.5382 -0.3905 8 6 2.7898 -5.8929 -1.0176 9 7 1.4857 -6.5233 -1.2622 10 6 1.6483 -7.8490 -1.8739 11 6 0.2717 -8.4725 -2.1135 12 6 0.4384 -9.8321 -2.7415 13 1 1.4274 -10.2133 -2.9494 14 6 -0.6715 -10.5890 -3.0517 15 7 -1.8756 -10.1246 -2.7990 16 14 -0.4647 -12.2741 -3.8309 17 1 0.9809 -12.5626 -4.0102 18 1 -1.0689 -13.3048 -2.9488 19 1 -1.1418 -12.2950 -5.1523 20 6 2.5246 -4.4122 0.9853 21 6 2.3445 -3.1734 1.5647 22 6 2.2122 -2.0388 0.7678 23 8 2.0393 -0.7365 1.1248 24 1 -0.3632 0.4862 0.9053 25 1 -0.3632 0.5410 -0.8737 26 1 -0.3633 -1.0271 -0.0316 27 1 3.1593 1.4089 -0.0315 28 1 1.6921 1.9624 -0.8738 29 1 1.7433 1.9430 0.9054 30 1 1.3543 -0.8161 -2.0224 31 1 3.0307 -0.3877 -1.5443 32 1 2.4879 -3.5113 -2.2645 33 1 3.3210 -5.7786 -1.9625 34 1 3.3756 -6.5192 -0.3448 35 1 0.9470 -6.5818 -0.4110 36 1 2.1718 -7.7487 -2.8246 37 1 2.2260 -8.4887 -1.2067 38 1 -0.2522 -8.5726 -1.1629 39 1 -0.3057 -7.8326 -2.7809 40 1 -2.6565 -10.6570 -3.0176 41 1 2.6251 -5.2877 1.6097 42 1 2.3057 -3.0831 2.6402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273029121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:43 Heat of formation + Delta-G solvation = -24.817474 kcal Electronic energy + Delta-G solvation = -20347.477576 eV Core-core repulsion = 17291.927641 eV Total energy + Delta-G solvation = -3055.549935 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41524 -38.23348 -35.66993 -34.02125 -33.03118 -31.68772 -30.89733 -28.78162 -27.77842 -26.79824 -25.15364 -23.28420 -22.06537 -21.10215 -20.65352 -20.40356 -17.27303 -16.37734 -16.28231 -15.99580 -15.64648 -14.58917 -14.49065 -14.35405 -14.14625 -13.93256 -13.70516 -13.31343 -13.00712 -12.74281 -12.69203 -12.57553 -12.29598 -12.18006 -12.01709 -11.85227 -11.47774 -11.15447 -11.04104 -10.92697 -10.81815 -10.66902 -10.50472 -9.99259 -9.39916 -9.13627 -8.86044 -8.35098 -8.09222 -7.76710 -5.99120 -4.01692 1.28842 1.38952 3.05402 3.31589 3.38879 3.42909 3.67142 4.21845 4.27758 4.45178 4.52056 4.72997 4.83668 4.88354 5.06538 5.14051 5.19582 5.28501 5.31866 5.36880 5.38129 5.44002 5.46970 5.57617 5.67988 5.71364 5.74867 5.90032 5.91239 6.10890 6.26774 6.34246 6.40145 6.40306 6.62016 6.69702 6.98453 7.18359 7.47967 7.73985 7.83136 7.96367 8.09420 8.44268 9.05915 9.62096 11.12349 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034770 B = 0.002758 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.094233 B =10150.982533 C =10450.460148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 C -0.140 4.140 4 C -0.100 4.100 5 C -0.176 4.176 6 C -0.048 4.048 7 C -0.100 4.100 8 C 0.100 3.900 9 N -0.687 5.687 10 C 0.065 3.935 11 C 0.025 3.975 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.080 4.080 21 C -0.139 4.139 22 C 0.100 3.900 23 O -0.301 6.301 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.337 0.663 36 H 0.059 0.941 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.025 0.975 40 H 0.260 0.740 41 H 0.128 0.872 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.822 21.948 6.578 24.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.063 3.937 3 C -0.197 4.197 4 C -0.137 4.137 5 C -0.177 4.177 6 C -0.067 4.067 7 C -0.100 4.100 8 C -0.029 4.029 9 N -0.318 5.318 10 C -0.063 4.063 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.099 4.099 21 C -0.158 4.158 22 C 0.055 3.945 23 O -0.216 6.216 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.155 0.845 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.146 0.854 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.584 22.333 6.153 24.705 hybrid contribution 0.236 -1.519 0.225 1.553 sum 8.820 20.815 6.378 23.489 Atomic orbital electron populations 1.22197 0.93389 1.03493 1.03001 1.22725 0.94390 0.92737 0.83824 1.21828 1.01873 0.92887 1.03162 1.21856 1.02403 0.91334 0.98072 1.20698 1.07831 0.95254 0.93873 1.20188 0.96717 0.89772 0.99987 1.19778 1.01931 0.95281 0.93026 1.20816 0.92378 0.90529 0.99173 1.60663 1.14835 1.24377 1.31897 1.22189 1.01119 0.85833 0.97148 1.19073 0.90241 0.94778 0.97161 1.21217 0.92596 1.01677 1.40477 0.92691 1.25011 0.95295 0.98234 0.95892 1.69987 0.97563 1.37636 1.48051 0.86531 0.78161 0.84232 0.79031 1.19769 1.21038 1.20975 1.20791 0.98295 0.96326 0.94495 1.20171 1.06752 0.89426 0.99467 1.19486 0.97354 0.84770 0.92889 1.86842 1.80154 1.16682 1.37887 0.91425 0.90704 0.91525 0.91518 0.90350 0.91331 0.89043 0.89332 0.85647 0.90605 0.94892 0.84543 0.92295 0.96590 0.96803 0.95650 0.93048 0.85380 0.85750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.85 37.16 0.33 -1.09 16 2 C 0.10 0.96 1.26 -89.72 -0.11 0.84 16 3 C -0.14 -0.96 8.96 37.16 0.33 -0.63 16 4 C -0.10 -0.96 6.18 -26.51 -0.16 -1.13 16 5 C -0.18 -2.21 6.26 -104.10 -0.65 -2.86 16 6 C -0.05 -0.64 9.70 -39.72 -0.39 -1.02 16 7 C -0.10 -1.36 5.40 -104.56 -0.56 -1.93 16 8 C 0.10 1.48 5.82 -4.98 -0.03 1.45 16 9 N -0.69 -12.46 6.49 -115.05 -0.75 -13.20 16 10 C 0.07 1.38 5.62 -3.82 -0.02 1.36 16 11 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 12 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 15 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 16 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C -0.08 -1.02 9.68 -39.67 -0.38 -1.40 16 21 C -0.14 -1.75 10.06 -39.30 -0.40 -2.15 16 22 C 0.10 1.32 6.95 -38.95 -0.27 1.05 16 23 O -0.30 -3.77 10.52 -20.17 -0.21 -3.98 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 27 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.79 7.92 -51.93 -0.41 0.37 16 31 H 0.09 0.75 7.91 -51.93 -0.41 0.34 16 32 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 34 H 0.03 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.34 6.01 8.72 -39.29 -0.34 5.67 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 348.04 15.07 5.24 5.24 Total: -1.00 -31.52 348.04 -9.91 -41.44 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.04 Total: 0.81 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -2.87 Total: -20.66 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: -0.01 Total: -39.60 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.21 Total: -3.98 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.52 -9.91 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273029121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.620 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds