Wall clock time and date at job start Mon Mar 30 2020 01:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 110.66900 * 2 1 4 4 C 1.54714 * 110.74842 * 236.58625 * 2 1 3 5 5 C 1.51647 * 101.91590 * 266.98906 * 4 2 1 6 6 C 1.37743 * 132.17206 * 164.29060 * 5 4 2 7 7 C 1.38349 * 119.97821 * 180.31689 * 6 5 4 8 8 C 1.50705 * 120.11873 * 180.19830 * 7 6 5 9 9 N 1.46894 * 109.46995 * 270.22620 * 8 7 6 10 10 C 1.46908 * 110.99755 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47137 * 180.02562 * 10 9 8 12 12 C 1.50694 * 109.47244 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99537 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00126 * 180.02562 * 12 11 10 15 15 N 1.31510 * 119.99794 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99903 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47227 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47067 * 119.99702 * 16 14 12 19 19 H 1.48499 * 109.47426 * 239.99877 * 16 14 12 20 20 C 1.38286 * 119.76566 * 0.42800 * 7 6 5 21 21 C 1.37934 * 120.35095 * 359.34067 * 20 7 6 22 22 C 1.38888 * 107.03971 * 344.49663 * 5 4 2 23 23 O 1.36134 * 111.24075 * 359.10415 * 22 5 4 24 24 H 1.08996 * 109.46724 * 298.23845 * 1 2 3 25 25 H 1.08994 * 109.46687 * 58.23687 * 1 2 3 26 26 H 1.08996 * 109.47235 * 178.23515 * 1 2 3 27 27 H 1.08996 * 109.47330 * 181.75938 * 3 2 1 28 28 H 1.09003 * 109.47040 * 301.76402 * 3 2 1 29 29 H 1.09002 * 109.46866 * 61.75802 * 3 2 1 30 30 H 1.09002 * 110.93912 * 25.13880 * 4 2 1 31 31 H 1.08997 * 110.94291 * 148.83380 * 4 2 1 32 32 H 1.08005 * 120.00903 * 0.51242 * 6 5 4 33 33 H 1.09000 * 109.46872 * 30.22738 * 8 7 6 34 34 H 1.09002 * 109.46786 * 150.22593 * 8 7 6 35 35 H 1.00901 * 111.00324 * 303.95363 * 9 8 7 36 36 H 1.08998 * 109.46633 * 299.99770 * 10 9 8 37 37 H 1.08996 * 109.47313 * 59.99926 * 10 9 8 38 38 H 1.09000 * 109.46897 * 300.00165 * 11 10 9 39 39 H 1.09005 * 109.46827 * 59.99787 * 11 10 9 40 40 H 0.97004 * 119.99551 * 179.97438 * 15 14 12 41 41 H 1.08002 * 119.82806 * 179.62686 * 20 7 6 42 42 H 1.07997 * 119.87774 * 180.35239 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0781 -0.7967 -1.2077 5 6 2.2619 -2.1796 -0.6131 6 6 2.4466 -3.4170 -1.1894 7 6 2.5831 -4.5382 -0.3905 8 6 2.7898 -5.8929 -1.0176 9 7 1.4857 -6.5233 -1.2622 10 6 1.6483 -7.8490 -1.8739 11 6 0.2717 -8.4725 -2.1135 12 6 0.4384 -9.8321 -2.7415 13 1 1.4274 -10.2133 -2.9494 14 6 -0.6715 -10.5890 -3.0517 15 7 -1.8756 -10.1246 -2.7990 16 14 -0.4647 -12.2741 -3.8309 17 1 0.9809 -12.5626 -4.0102 18 1 -1.0689 -13.3048 -2.9488 19 1 -1.1418 -12.2950 -5.1523 20 6 2.5246 -4.4122 0.9853 21 6 2.3445 -3.1734 1.5647 22 6 2.2122 -2.0388 0.7678 23 8 2.0393 -0.7365 1.1248 24 1 -0.3632 0.4862 0.9053 25 1 -0.3632 0.5410 -0.8737 26 1 -0.3633 -1.0271 -0.0316 27 1 3.1593 1.4089 -0.0315 28 1 1.6921 1.9624 -0.8738 29 1 1.7433 1.9430 0.9054 30 1 1.3543 -0.8161 -2.0224 31 1 3.0307 -0.3877 -1.5443 32 1 2.4879 -3.5113 -2.2645 33 1 3.3210 -5.7786 -1.9625 34 1 3.3756 -6.5192 -0.3448 35 1 0.9470 -6.5818 -0.4110 36 1 2.1718 -7.7487 -2.8246 37 1 2.2260 -8.4887 -1.2067 38 1 -0.2522 -8.5726 -1.1629 39 1 -0.3057 -7.8326 -2.7809 40 1 -2.6565 -10.6570 -3.0176 41 1 2.6251 -5.2877 1.6097 42 1 2.3057 -3.0831 2.6402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273029121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:42 Heat of formation + Delta-G solvation = -43.413387 kcal Electronic energy + Delta-G solvation = -20348.283955 eV Core-core repulsion = 17291.927641 eV Total energy + Delta-G solvation = -3056.356314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29048 -39.25558 -37.16442 -35.08353 -34.76040 -32.80092 -32.16225 -30.37232 -28.39530 -27.74900 -26.68246 -24.91476 -23.03148 -22.44629 -21.95280 -21.44122 -18.50835 -18.18048 -17.24556 -17.13533 -16.66048 -16.43042 -15.76283 -15.53571 -15.26781 -14.96359 -14.78659 -14.30730 -14.21856 -14.09697 -13.72500 -13.60049 -13.45279 -13.17917 -12.94495 -12.91803 -12.83746 -12.64998 -12.52520 -12.34272 -11.96931 -11.92934 -11.69285 -11.55205 -11.39403 -11.22508 -10.57034 -9.82877 -9.33474 -8.98839 -8.20145 -6.31740 0.30463 0.38709 1.40935 1.41332 1.54770 2.22251 2.40834 2.68050 3.13356 3.42797 3.49088 3.55940 3.84268 3.93117 3.96327 4.04170 4.19195 4.37049 4.41488 4.52948 4.59666 4.63246 4.65601 4.72078 4.73387 4.74513 4.82362 4.88203 4.99297 5.07550 5.10740 5.21159 5.26651 5.29487 5.42743 5.45072 5.64557 5.67705 5.70174 5.78719 6.13085 6.24758 6.28640 6.51615 6.86060 7.37692 8.92269 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.034770 B = 0.002758 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.094233 B =10150.982533 C =10450.460148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 C -0.137 4.137 4 C -0.098 4.098 5 C -0.184 4.184 6 C -0.060 4.060 7 C -0.113 4.113 8 C 0.106 3.894 9 N -0.694 5.694 10 C 0.084 3.916 11 C 0.031 3.969 12 C -0.543 4.543 13 H 0.062 0.938 14 C -0.001 4.001 15 N -0.933 5.933 16 Si 0.968 3.032 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.278 1.278 20 C -0.082 4.082 21 C -0.148 4.148 22 C 0.088 3.912 23 O -0.316 6.316 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.043 0.957 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.338 0.662 36 H 0.061 0.939 37 H 0.022 0.978 38 H -0.010 1.010 39 H -0.007 1.007 40 H 0.264 0.736 41 H 0.143 0.857 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.837 22.474 6.244 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 C -0.193 4.193 4 C -0.135 4.135 5 C -0.185 4.185 6 C -0.078 4.078 7 C -0.113 4.113 8 C -0.023 4.023 9 N -0.325 5.325 10 C -0.045 4.045 11 C -0.006 4.006 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.199 4.199 15 N -0.573 5.573 16 Si 0.793 3.207 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.101 4.101 21 C -0.167 4.167 22 C 0.043 3.957 23 O -0.231 6.231 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.155 0.845 36 H 0.079 0.921 37 H 0.041 0.959 38 H 0.009 0.991 39 H 0.011 0.989 40 H 0.072 0.928 41 H 0.161 0.839 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.617 22.880 5.825 25.493 hybrid contribution -0.107 -1.577 0.370 1.623 sum 9.511 21.303 6.195 24.138 Atomic orbital electron populations 1.22212 0.93016 1.02400 1.04306 1.23048 0.94817 0.93752 0.82762 1.21862 1.01873 0.91172 1.04442 1.21967 1.03489 0.89658 0.98401 1.21009 1.07085 0.96255 0.94123 1.20324 0.97062 0.90146 1.00283 1.19734 1.03259 0.94778 0.93573 1.20804 0.90601 0.91001 0.99862 1.60569 1.17076 1.22616 1.32216 1.21806 0.97724 0.87219 0.97760 1.18926 0.92580 0.94173 0.94950 1.21652 0.93077 1.02718 1.40699 0.91991 1.26001 0.94854 1.02732 0.96322 1.70122 0.98541 1.39514 1.49106 0.85353 0.78733 0.78667 0.77994 1.18466 1.20354 1.20365 1.20965 0.97826 0.96989 0.94311 1.20417 1.06525 0.89391 1.00363 1.19749 0.97303 0.85304 0.93372 1.86829 1.80315 1.16470 1.39475 0.91057 0.88441 0.93810 0.91524 0.87992 0.91058 0.87943 0.87932 0.85266 0.90183 0.93694 0.84487 0.92098 0.95945 0.99138 0.98871 0.92756 0.83921 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 8.85 71.98 0.64 -1.97 16 2 C 0.09 1.63 1.26 -10.21 -0.01 1.61 16 3 C -0.14 -1.56 8.96 71.98 0.65 -0.91 16 4 C -0.10 -1.75 6.18 30.73 0.19 -1.56 16 5 C -0.18 -4.51 6.26 -19.52 -0.12 -4.63 16 6 C -0.06 -1.56 9.70 22.18 0.22 -1.34 16 7 C -0.11 -3.03 5.40 -19.82 -0.11 -3.14 16 8 C 0.11 3.03 5.82 85.56 0.50 3.52 16 9 N -0.69 -25.11 6.49 -517.92 -3.36 -28.48 16 10 C 0.08 3.53 5.62 86.30 0.49 4.02 16 11 C 0.03 1.69 5.23 29.85 0.16 1.84 16 12 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 15 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 16 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 17 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 C -0.08 -2.03 9.68 22.21 0.21 -1.82 16 21 C -0.15 -3.65 10.06 22.45 0.23 -3.42 16 22 C 0.09 2.27 6.95 22.68 0.16 2.43 16 23 O -0.32 -7.66 10.52 -95.07 -1.00 -8.66 16 24 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 0.90 8.13 -2.39 -0.02 0.88 16 27 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 1.58 7.92 -2.39 -0.02 1.56 16 31 H 0.10 1.53 7.91 -2.39 -0.02 1.51 16 32 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 33 H 0.08 2.22 8.09 -2.39 -0.02 2.20 16 34 H 0.04 1.19 8.09 -2.39 -0.02 1.17 16 35 H 0.34 12.13 8.72 -89.69 -0.78 11.35 16 36 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 39 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 40 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 41 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 42 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -67.91 348.04 2.03 -65.88 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.20 Total: 18.01 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.88 Total: -36.01 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -3.08 Total: -85.75 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -1.00 Total: -8.66 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.91 2.03 -65.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273029121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.466 kcal (2) G-P(sol) polarization free energy of solvation -67.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds