Wall clock time and date at job start Mon Mar 30 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38231 * 120.00076 * 2 1 4 4 C 1.38240 * 119.99438 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00320 * 359.95213 * 4 3 2 6 6 C 1.50697 * 120.00090 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46944 * 90.00012 * 6 5 4 8 8 H 1.08996 * 109.47407 * 305.00508 * 7 6 5 9 9 C 1.53002 * 109.47128 * 65.00167 * 7 6 5 10 10 C 1.50696 * 109.47303 * 185.00130 * 7 6 5 11 11 O 1.21284 * 120.00109 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 7 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47300 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47196 * 59.99759 * 19 17 15 21 21 H 1.48494 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46819 * 300.00256 * 19 17 15 23 23 C 1.38240 * 119.99782 * 0.27775 * 5 4 3 24 24 C 1.38236 * 120.00074 * 359.51644 * 23 5 4 25 25 H 1.08998 * 109.46825 * 89.99923 * 1 2 3 26 26 H 1.08996 * 109.47308 * 210.00392 * 1 2 3 27 27 H 1.09002 * 109.46814 * 330.00444 * 1 2 3 28 28 H 1.07997 * 120.00672 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99405 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47019 * 330.00558 * 6 5 4 31 31 H 1.08996 * 109.47375 * 209.99998 * 6 5 4 32 32 H 1.09004 * 109.47006 * 59.99907 * 9 7 6 33 33 H 1.08992 * 109.47513 * 179.97438 * 9 7 6 34 34 H 1.09002 * 109.46838 * 300.00410 * 9 7 6 35 35 H 0.96999 * 120.00047 * 359.97438 * 12 10 7 36 36 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 37 37 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 38 38 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 39 39 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 40 40 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.99348 * 179.72647 * 23 5 4 42 42 H 1.07992 * 120.00016 * 180.24809 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0001 6 6 5.7787 -0.0003 -0.0001 7 6 6.2887 0.0002 1.4425 8 1 5.8541 0.8421 1.9812 9 6 5.8838 -1.3069 2.1270 10 6 7.7905 0.1239 1.4443 11 8 8.3937 0.2043 0.3952 12 7 8.4635 0.1453 2.6118 13 6 9.9236 0.2662 2.6136 14 6 10.4336 0.2666 4.0561 15 6 11.9354 0.3903 4.0580 16 1 12.4726 0.4611 3.1237 17 6 12.6239 0.4131 5.2523 18 7 11.9699 0.3263 6.3900 19 14 14.4855 0.5671 5.2546 20 1 14.8780 1.8357 4.5900 21 1 14.9805 0.5674 6.6546 22 1 15.0780 -0.5800 4.5208 23 6 3.5804 -1.1974 -0.0049 24 6 2.1981 -1.1973 0.0000 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6584 2.1325 -0.0004 29 1 4.1206 2.1323 -0.0010 30 1 6.1421 0.8895 -0.5142 31 1 6.1420 -0.8905 -0.5135 32 1 6.3184 -2.1490 1.5882 33 1 6.2475 -1.3068 3.1545 34 1 4.7975 -1.3964 2.1256 35 1 7.9812 0.0814 3.4509 36 1 10.3585 -0.5754 2.0743 37 1 10.2117 1.1977 2.1265 38 1 9.9987 1.1084 4.5950 39 1 10.1454 -0.6648 4.5436 40 1 12.4541 0.3420 7.2303 41 1 4.1205 -2.1326 -0.0090 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273077719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:14 Heat of formation + Delta-G solvation = -49.930078 kcal Electronic energy + Delta-G solvation = -20131.946238 eV Core-core repulsion = 17075.307339 eV Total energy + Delta-G solvation = -3056.638899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.02739 -39.12230 -35.43816 -34.75756 -32.92405 -32.26460 -31.09460 -29.63391 -28.29379 -25.71548 -24.90251 -23.02710 -22.64415 -21.04165 -20.67532 -19.48249 -17.04964 -16.36655 -15.95102 -15.75754 -15.29633 -15.10739 -15.03653 -14.48797 -14.06225 -13.94239 -13.59817 -13.46187 -13.17708 -12.73315 -12.64381 -12.37947 -12.28962 -12.09159 -12.04857 -11.27926 -11.20881 -11.13589 -11.09042 -11.01480 -10.90311 -10.65470 -10.31512 -9.76460 -9.43404 -9.16869 -9.05322 -8.60534 -8.52885 -8.34008 -6.09367 -4.12306 1.16034 1.24648 3.03826 3.31070 3.34825 3.37749 3.51906 3.76997 4.41442 4.61456 4.61755 4.78811 4.83367 4.88198 4.93138 5.10890 5.14044 5.27469 5.29984 5.32672 5.46393 5.49091 5.53616 5.67380 5.74840 5.77929 5.92989 5.96049 6.13566 6.16022 6.26949 6.35634 6.36523 6.41559 6.54519 6.74511 6.86225 6.94773 7.51617 7.61762 7.88700 8.04222 8.28015 8.68124 8.93538 9.52426 11.02175 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047509 B = 0.002565 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.217249 B =10911.674042 C =11074.387366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.119 4.119 4 C -0.113 4.113 5 C -0.079 4.079 6 C -0.062 4.062 7 C -0.105 4.105 8 H 0.095 0.905 9 C -0.147 4.147 10 C 0.509 3.491 11 O -0.552 6.552 12 N -0.721 5.721 13 C 0.121 3.879 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.111 4.111 24 C -0.120 4.120 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.397 0.603 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.263 0.737 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.776 -1.591 -10.348 25.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.137 4.137 4 C -0.131 4.131 5 C -0.080 4.080 6 C -0.100 4.100 7 C -0.126 4.126 8 H 0.113 0.887 9 C -0.204 4.204 10 C 0.294 3.706 11 O -0.431 6.431 12 N -0.371 5.371 13 C -0.001 4.001 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.129 4.129 24 C -0.139 4.139 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.231 0.769 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -22.281 -1.536 -10.891 24.848 hybrid contribution 0.828 0.087 0.612 1.033 sum -21.454 -1.449 -10.279 23.833 Atomic orbital electron populations 1.20777 0.91437 1.02647 1.02142 1.19903 0.95938 0.93314 1.00436 1.21008 0.94170 0.97435 1.01126 1.21091 0.94084 0.97800 1.00120 1.19927 0.95677 0.93133 0.99213 1.20406 0.89772 1.04445 0.95337 1.21264 0.92777 1.00676 0.97926 0.88703 1.21858 1.02137 0.95826 1.00581 1.20532 0.89421 0.76486 0.84149 1.90664 1.70412 1.50468 1.31539 1.46344 1.09593 1.73185 1.07977 1.21716 0.76474 1.00547 1.01392 1.19316 0.96477 0.97804 0.88858 1.21017 0.91379 1.50989 0.92699 0.92319 1.25000 0.98787 0.95012 0.95512 1.69943 1.35840 1.50166 0.97374 0.86565 0.85140 0.78828 0.76962 1.20107 1.21243 1.20111 1.21091 0.94005 0.97756 1.00029 1.21011 0.94189 0.97413 1.01236 0.91374 0.91667 0.91671 0.86272 0.86000 0.90083 0.90295 0.92083 0.91872 0.91342 0.76918 0.92628 0.92642 0.95978 0.95973 0.92787 0.85969 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.01 0.36 -0.35 16 2 C -0.10 -0.84 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.11 -1.13 9.70 -39.58 -0.38 -1.51 16 5 C -0.08 -0.84 4.71 -104.62 -0.49 -1.33 16 6 C -0.06 -0.73 4.19 -27.88 -0.12 -0.85 16 7 C -0.11 -1.29 2.71 -91.77 -0.25 -1.54 16 8 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 9 C -0.15 -1.56 8.67 37.16 0.32 -1.24 16 10 C 0.51 8.55 7.15 -10.99 -0.08 8.47 16 11 O -0.55 -11.32 15.92 5.55 0.09 -11.23 16 12 N -0.72 -12.63 5.45 -60.29 -0.33 -12.96 16 13 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 14 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 15 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 18 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 19 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.11 -1.07 7.98 -39.58 -0.32 -1.39 16 24 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 28 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 29 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 30 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 31 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 34 H 0.07 0.65 6.28 -51.93 -0.33 0.32 16 35 H 0.40 6.06 7.89 -40.82 -0.32 5.74 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.12 1.05 8.05 -52.49 -0.42 0.63 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -31.66 350.35 -9.06 -40.72 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.90 Total: 1.90 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -2.91 Total: -14.68 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.41 Total: -38.42 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.66 -9.06 -40.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273077719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.210 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds