Wall clock time and date at job start Mon Mar 30 2020 02:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38231 * 120.00076 * 2 1 4 4 C 1.38240 * 119.99438 * 180.02562 * 3 2 1 5 5 C 1.38235 * 120.00320 * 359.95213 * 4 3 2 6 6 C 1.50697 * 120.00090 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.46944 * 90.00012 * 6 5 4 8 8 H 1.08996 * 109.47407 * 305.00508 * 7 6 5 9 9 C 1.53002 * 109.47128 * 65.00167 * 7 6 5 10 10 C 1.50696 * 109.47303 * 185.00130 * 7 6 5 11 11 O 1.21284 * 120.00109 * 0.02562 * 10 7 6 12 12 N 1.34777 * 120.00137 * 180.02562 * 10 7 6 13 13 C 1.46506 * 119.99873 * 180.02562 * 12 10 7 14 14 C 1.53002 * 109.47035 * 179.97438 * 13 12 10 15 15 C 1.50696 * 109.47300 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99822 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00339 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99769 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00300 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47196 * 59.99759 * 19 17 15 21 21 H 1.48494 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46819 * 300.00256 * 19 17 15 23 23 C 1.38240 * 119.99782 * 0.27775 * 5 4 3 24 24 C 1.38236 * 120.00074 * 359.51644 * 23 5 4 25 25 H 1.08998 * 109.46825 * 89.99923 * 1 2 3 26 26 H 1.08996 * 109.47308 * 210.00392 * 1 2 3 27 27 H 1.09002 * 109.46814 * 330.00444 * 1 2 3 28 28 H 1.07997 * 120.00672 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.99405 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.47019 * 330.00558 * 6 5 4 31 31 H 1.08996 * 109.47375 * 209.99998 * 6 5 4 32 32 H 1.09004 * 109.47006 * 59.99907 * 9 7 6 33 33 H 1.08992 * 109.47513 * 179.97438 * 9 7 6 34 34 H 1.09002 * 109.46838 * 300.00410 * 9 7 6 35 35 H 0.96999 * 120.00047 * 359.97438 * 12 10 7 36 36 H 1.09004 * 109.47073 * 299.99562 * 13 12 10 37 37 H 1.09000 * 109.47212 * 59.99645 * 13 12 10 38 38 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 39 39 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 40 40 H 0.97000 * 120.00540 * 179.97438 * 18 17 15 41 41 H 1.07997 * 119.99348 * 179.72647 * 23 5 4 42 42 H 1.07992 * 120.00016 * 180.24809 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0001 6 6 5.7787 -0.0003 -0.0001 7 6 6.2887 0.0002 1.4425 8 1 5.8541 0.8421 1.9812 9 6 5.8838 -1.3069 2.1270 10 6 7.7905 0.1239 1.4443 11 8 8.3937 0.2043 0.3952 12 7 8.4635 0.1453 2.6118 13 6 9.9236 0.2662 2.6136 14 6 10.4336 0.2666 4.0561 15 6 11.9354 0.3903 4.0580 16 1 12.4726 0.4611 3.1237 17 6 12.6239 0.4131 5.2523 18 7 11.9699 0.3263 6.3900 19 14 14.4855 0.5671 5.2546 20 1 14.8780 1.8357 4.5900 21 1 14.9805 0.5674 6.6546 22 1 15.0780 -0.5800 4.5208 23 6 3.5804 -1.1974 -0.0049 24 6 2.1981 -1.1973 0.0000 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5138 28 1 1.6584 2.1325 -0.0004 29 1 4.1206 2.1323 -0.0010 30 1 6.1421 0.8895 -0.5142 31 1 6.1420 -0.8905 -0.5135 32 1 6.3184 -2.1490 1.5882 33 1 6.2475 -1.3068 3.1545 34 1 4.7975 -1.3964 2.1256 35 1 7.9812 0.0814 3.4509 36 1 10.3585 -0.5754 2.0743 37 1 10.2117 1.1977 2.1265 38 1 9.9987 1.1084 4.5950 39 1 10.1454 -0.6648 4.5436 40 1 12.4541 0.3420 7.2303 41 1 4.1205 -2.1326 -0.0090 42 1 1.6581 -2.1325 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273077719.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:14 Heat of formation + Delta-G solvation = -67.416512 kcal Electronic energy + Delta-G solvation = -20132.704506 eV Core-core repulsion = 17075.307339 eV Total energy + Delta-G solvation = -3057.397168 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12550 -40.14368 -36.75018 -36.14701 -34.83776 -33.18272 -31.78383 -31.39968 -29.13755 -26.99410 -26.30368 -24.14550 -23.48933 -22.73754 -21.60910 -20.74163 -18.60911 -18.10711 -16.90829 -16.74873 -16.60349 -16.44671 -16.24109 -15.86795 -15.28913 -14.97808 -14.57199 -14.39221 -14.30122 -14.18623 -13.79809 -13.40784 -13.24053 -13.18636 -12.94565 -12.88164 -12.76024 -12.55685 -12.24171 -12.08669 -12.02902 -11.85498 -11.70268 -11.65155 -11.47579 -10.71267 -10.60895 -10.01147 -9.76268 -9.32820 -8.24808 -6.35510 0.44516 0.55036 1.41110 1.43410 1.51464 1.66150 2.26042 2.45199 2.88287 3.09638 3.64628 3.86507 3.92525 4.07100 4.09533 4.21120 4.23674 4.38570 4.45195 4.48975 4.55840 4.65860 4.77211 4.84169 4.84580 4.87671 4.89720 4.94788 5.02912 5.17531 5.23234 5.27613 5.31018 5.35736 5.49207 5.57030 5.57113 5.76122 5.77821 5.78984 6.15399 6.18165 6.63148 6.77454 7.28353 7.33716 8.86757 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.047509 B = 0.002565 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.217249 B =10911.674042 C =11074.387366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.092 4.092 6 C -0.055 4.055 7 C -0.093 4.093 8 H 0.112 0.888 9 C -0.142 4.142 10 C 0.508 3.492 11 O -0.590 6.590 12 N -0.717 5.717 13 C 0.140 3.860 14 C 0.023 3.977 15 C -0.549 4.549 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.926 5.926 19 Si 0.965 3.035 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 C -0.117 4.117 24 C -0.127 4.127 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.410 0.590 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.130 0.870 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.071 -1.799 -10.401 26.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.092 4.092 6 C -0.093 4.093 7 C -0.114 4.114 8 H 0.130 0.870 9 C -0.199 4.199 10 C 0.296 3.704 11 O -0.471 6.471 12 N -0.368 5.368 13 C 0.016 3.984 14 C -0.014 4.014 15 C -0.587 4.587 16 H 0.076 0.924 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.193 1.193 23 C -0.135 4.135 24 C -0.145 4.145 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.246 0.754 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.148 0.852 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.607 -1.747 -10.939 26.077 hybrid contribution 1.154 0.155 0.603 1.311 sum -22.453 -1.592 -10.336 24.769 Atomic orbital electron populations 1.20824 0.89647 1.03534 1.02911 1.20267 0.97385 0.93099 0.99270 1.21258 0.93910 0.98495 1.00860 1.21237 0.94770 0.97818 1.00399 1.19801 0.94566 0.93896 1.00895 1.20284 0.91036 1.03333 0.94614 1.21250 0.88848 1.02367 0.98929 0.86995 1.21850 1.03206 0.94463 1.00416 1.21336 0.91242 0.74853 0.82954 1.90646 1.71667 1.52009 1.32823 1.46185 1.08005 1.73383 1.09191 1.21215 0.78914 0.99524 0.98759 1.19125 0.95431 0.96331 0.90520 1.21441 0.93027 1.51264 0.92960 0.92375 1.25881 1.03803 0.94454 0.95081 1.70047 1.37775 1.50745 0.97967 0.85496 0.79128 0.79126 0.77295 1.19355 1.20522 1.19348 1.21234 0.94598 0.97717 0.99963 1.21285 0.93982 0.98429 1.00759 0.90565 0.90738 0.90898 0.84671 0.85673 0.91498 0.91184 0.92460 0.91445 0.89626 0.75437 0.93676 0.93715 0.97355 0.97297 0.92504 0.85229 0.84426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 2 C -0.10 -1.53 5.88 -19.86 -0.12 -1.65 16 3 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 4 C -0.12 -2.34 9.70 22.27 0.22 -2.13 16 5 C -0.09 -1.83 4.71 -19.87 -0.09 -1.93 16 6 C -0.05 -1.28 4.19 29.85 0.13 -1.16 16 7 C -0.09 -2.20 2.71 -11.54 -0.03 -2.23 16 8 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 9 C -0.14 -2.81 8.67 71.98 0.62 -2.19 16 10 C 0.51 17.05 7.15 87.66 0.63 17.68 16 11 O -0.59 -24.60 15.92 -3.04 -0.05 -24.65 16 12 N -0.72 -25.12 5.45 -463.04 -2.52 -27.64 16 13 C 0.14 6.11 5.61 86.38 0.48 6.59 16 14 C 0.02 1.19 5.09 29.85 0.15 1.34 16 15 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 16 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -54.45 13.29 21.45 0.28 -54.17 16 19 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.12 -2.08 7.98 22.27 0.18 -1.91 16 24 C -0.13 -1.98 9.70 22.27 0.22 -1.77 16 25 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 27 H 0.07 0.61 8.09 -2.39 -0.02 0.60 16 28 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.07 1.73 7.90 -2.39 -0.02 1.71 16 31 H 0.07 1.73 8.08 -2.39 -0.02 1.72 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.17 16 33 H 0.07 1.28 7.56 -2.39 -0.02 1.27 16 34 H 0.08 1.44 6.28 -2.39 -0.01 1.42 16 35 H 0.41 12.32 7.89 -92.71 -0.73 11.59 16 36 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 37 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 39 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.13 2.03 8.05 -2.91 -0.02 2.01 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -67.49 350.35 4.00 -63.49 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.26 Total: 18.59 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: 4.01 Total: -21.44 kcal Atomic # 7 Polarization: -79.57 SS G_CDS: -2.24 Total: -81.81 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.49 4.00 -63.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273077719.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.926 kcal (2) G-P(sol) polarization free energy of solvation -67.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds