Wall clock time and date at job start Mon Mar 30 2020 02:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46924 * 90.00031 * 6 5 4 8 8 H 1.09002 * 109.47073 * 55.00322 * 7 6 5 9 9 C 1.52999 * 109.47317 * 294.99988 * 7 6 5 10 10 C 1.50706 * 109.47154 * 175.00101 * 7 6 5 11 11 O 1.21283 * 119.99450 * 359.97438 * 10 7 6 12 12 N 1.34770 * 119.99854 * 179.97438 * 10 7 6 13 13 C 1.46505 * 119.99651 * 180.02562 * 12 10 7 14 14 C 1.52999 * 109.46952 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.47154 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00194 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00347 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00050 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46951 * 90.00339 * 19 17 15 21 21 H 1.48500 * 109.47346 * 210.00533 * 19 17 15 22 22 H 1.48508 * 109.47197 * 330.00696 * 19 17 15 23 23 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 24 24 C 1.38234 * 120.00063 * 359.97438 * 23 5 4 25 25 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 26 26 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 27 27 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 28 28 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 30 30 H 1.08999 * 109.47240 * 210.00239 * 6 5 4 31 31 H 1.08999 * 109.46861 * 329.99859 * 6 5 4 32 32 H 1.08999 * 109.47294 * 59.99981 * 9 7 6 33 33 H 1.09000 * 109.47548 * 179.97438 * 9 7 6 34 34 H 1.09007 * 109.46978 * 300.00507 * 9 7 6 35 35 H 0.96996 * 120.00437 * 0.02562 * 12 10 7 36 36 H 1.09002 * 109.47000 * 299.99604 * 13 12 10 37 37 H 1.08998 * 109.47495 * 60.00061 * 13 12 10 38 38 H 1.08997 * 109.47555 * 299.99706 * 14 13 12 39 39 H 1.09002 * 109.47073 * 60.00179 * 14 13 12 40 40 H 0.96996 * 120.00150 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99673 * 179.97438 * 23 5 4 42 42 H 1.08000 * 120.00005 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 6 6.2831 -0.0030 1.4562 8 1 5.8465 -0.8459 1.9919 9 6 5.8758 1.3030 2.1413 10 6 7.7851 -0.1268 1.4635 11 8 8.3921 -0.2055 0.4164 12 7 8.4536 -0.1501 2.6334 13 6 9.9137 -0.2699 2.6405 14 6 10.4182 -0.2729 4.0849 15 6 11.9201 -0.3968 4.0922 16 1 12.4607 -0.4669 3.1598 17 6 12.6040 -0.4218 5.2891 18 7 13.9147 -0.5294 5.2955 19 14 11.6690 -0.3013 6.9017 20 1 11.3055 -1.6641 7.3661 21 1 12.5239 0.3576 7.9216 22 1 10.4341 0.4984 6.6994 23 6 3.5805 -1.1972 0.0000 24 6 2.1981 -1.1972 -0.0058 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1324 0.0104 30 1 6.1439 -0.8890 -0.5025 31 1 6.1439 0.8909 -0.4990 32 1 4.7895 1.3927 2.1360 33 1 6.2348 1.3008 3.1704 34 1 6.3125 2.1459 1.6055 35 1 7.9681 -0.0875 3.4708 36 1 10.2043 -1.2004 2.1527 37 1 10.3501 0.5730 2.1046 38 1 10.1277 0.6573 4.5732 39 1 9.9819 -1.1161 4.6204 40 1 14.3958 -0.5466 6.1375 41 1 4.1205 -2.1325 -0.0002 42 1 1.6581 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273078592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:18 Heat of formation + Delta-G solvation = -45.636762 kcal Electronic energy + Delta-G solvation = -20193.302290 eV Core-core repulsion = 17136.849563 eV Total energy + Delta-G solvation = -3056.452727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.08994 -39.19725 -35.52276 -34.87479 -32.90496 -32.30799 -31.13523 -30.09418 -28.40191 -25.80508 -25.04373 -23.02974 -22.63334 -20.90856 -20.72460 -19.52273 -17.11130 -16.85808 -15.99710 -15.80707 -15.38792 -15.18026 -15.12175 -14.20627 -14.11393 -14.05960 -13.67501 -13.57186 -13.27411 -12.83744 -12.70043 -12.62753 -12.43407 -12.16114 -12.10703 -11.49550 -11.33887 -11.22492 -11.16988 -11.13616 -10.95576 -10.39515 -10.25160 -9.96754 -9.45504 -9.27351 -9.09916 -8.64944 -8.64460 -8.51699 -6.11536 -4.11683 1.11882 1.20642 2.95393 3.24659 3.32303 3.33531 3.45922 3.68072 4.37128 4.56519 4.57726 4.72571 4.77584 4.83327 4.87216 5.05543 5.07441 5.21287 5.26707 5.28267 5.39155 5.43968 5.49979 5.62024 5.67205 5.72213 5.88391 5.90999 6.05980 6.09786 6.14335 6.20796 6.23284 6.37750 6.50064 6.55875 6.76917 6.82442 7.13678 7.22826 7.66308 7.91954 8.43149 8.58803 8.92815 9.48539 11.01500 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.002788 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.496994 B =10040.515169 C =10374.279166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.121 4.121 4 C -0.111 4.111 5 C -0.080 4.080 6 C -0.062 4.062 7 C -0.105 4.105 8 H 0.095 0.905 9 C -0.147 4.147 10 C 0.510 3.490 11 O -0.548 6.548 12 N -0.726 5.726 13 C 0.129 3.871 14 C -0.022 4.022 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.068 3.932 18 N -0.898 5.898 19 Si 0.883 3.117 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.113 4.113 24 C -0.119 4.119 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.017 0.983 40 H 0.265 0.735 41 H 0.122 0.878 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.539 2.090 -8.015 28.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.129 4.129 5 C -0.080 4.080 6 C -0.100 4.100 7 C -0.127 4.127 8 H 0.113 0.887 9 C -0.204 4.204 10 C 0.295 3.705 11 O -0.426 6.426 12 N -0.375 5.375 13 C 0.007 3.993 14 C -0.060 4.060 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.537 5.537 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.131 4.131 24 C -0.137 4.137 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.902 2.025 -8.642 28.329 hybrid contribution -0.496 0.022 1.409 1.494 sum -27.399 2.047 -7.233 28.411 Atomic orbital electron populations 1.20777 0.91423 1.02650 1.02176 1.19905 0.95952 0.93311 1.00383 1.21014 0.94192 0.97426 1.01223 1.21090 0.94011 0.97758 1.00032 1.19921 0.95649 0.93137 0.99287 1.20408 0.89825 1.04528 0.95225 1.21271 0.92689 1.00662 0.98033 0.88687 1.21862 1.02207 0.95896 1.00453 1.20527 0.89464 0.76443 0.84056 1.90682 1.70138 1.50063 1.31672 1.46337 1.09542 1.73677 1.07993 1.21502 0.76354 1.01393 1.00042 1.19794 0.97983 0.96834 0.91369 1.20924 0.89120 1.51155 0.94904 0.90638 1.25008 0.94785 0.94395 0.99159 1.69904 1.06670 1.50185 1.26905 0.86745 0.80169 0.78603 0.83508 1.20235 1.21268 1.19087 1.21091 0.94086 0.97798 1.00113 1.21013 0.94175 0.97450 1.01110 0.91346 0.91661 0.91663 0.86267 0.85960 0.90022 0.90240 0.91289 0.92003 0.92000 0.77108 0.92023 0.91990 0.96025 0.96472 0.92554 0.85990 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.10 -0.80 5.88 -104.63 -0.62 -1.42 16 3 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 4 C -0.11 -1.03 7.96 -39.58 -0.32 -1.34 16 5 C -0.08 -0.80 4.71 -104.62 -0.49 -1.30 16 6 C -0.06 -0.70 4.19 -27.88 -0.12 -0.82 16 7 C -0.11 -1.22 2.71 -91.77 -0.25 -1.46 16 8 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 9 C -0.15 -1.45 8.66 37.16 0.32 -1.13 16 10 C 0.51 8.16 7.15 -10.99 -0.08 8.08 16 11 O -0.55 -10.91 15.92 5.55 0.09 -10.82 16 12 N -0.73 -11.90 5.45 -60.29 -0.33 -12.23 16 13 C 0.13 2.65 5.61 -4.04 -0.02 2.63 16 14 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 15 C -0.52 -14.69 9.66 -34.44 -0.33 -15.02 16 16 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 18 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 19 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 23 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 24 C -0.12 -1.04 9.70 -39.58 -0.38 -1.43 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 27 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 28 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.12 1.00 8.04 -52.49 -0.42 0.58 16 30 H 0.08 1.00 7.90 -51.93 -0.41 0.59 16 31 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 32 H 0.07 0.61 6.27 -51.93 -0.33 0.28 16 33 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 34 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.40 5.43 7.89 -40.82 -0.32 5.11 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 39 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -32.41 346.70 -8.68 -41.09 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -6.87 Total: 2.11 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -2.91 Total: -15.16 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.45 Total: -38.84 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.41 -8.68 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.542 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds