Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38234 * 120.00240 * 0.26327 * 4 3 2 6 6 C 1.50700 * 120.00260 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46924 * 90.00031 * 6 5 4 8 8 H 1.09002 * 109.47073 * 55.00322 * 7 6 5 9 9 C 1.52999 * 109.47317 * 294.99988 * 7 6 5 10 10 C 1.50706 * 109.47154 * 175.00101 * 7 6 5 11 11 O 1.21283 * 119.99450 * 359.97438 * 10 7 6 12 12 N 1.34770 * 119.99854 * 179.97438 * 10 7 6 13 13 C 1.46505 * 119.99651 * 180.02562 * 12 10 7 14 14 C 1.52999 * 109.46952 * 180.02562 * 13 12 10 15 15 C 1.50706 * 109.47154 * 179.97438 * 14 13 12 16 16 H 1.08005 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00194 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00347 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 120.00050 * 359.97438 * 17 15 14 20 20 H 1.48498 * 109.46951 * 90.00339 * 19 17 15 21 21 H 1.48500 * 109.47346 * 210.00533 * 19 17 15 22 22 H 1.48508 * 109.47197 * 330.00696 * 19 17 15 23 23 C 1.38238 * 119.99693 * 0.02562 * 5 4 3 24 24 C 1.38234 * 120.00063 * 359.97438 * 23 5 4 25 25 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 26 26 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 27 27 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 28 28 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 29 29 H 1.07999 * 120.00009 * 180.28389 * 4 3 2 30 30 H 1.08999 * 109.47240 * 210.00239 * 6 5 4 31 31 H 1.08999 * 109.46861 * 329.99859 * 6 5 4 32 32 H 1.08999 * 109.47294 * 59.99981 * 9 7 6 33 33 H 1.09000 * 109.47548 * 179.97438 * 9 7 6 34 34 H 1.09007 * 109.46978 * 300.00507 * 9 7 6 35 35 H 0.96996 * 120.00437 * 0.02562 * 12 10 7 36 36 H 1.09002 * 109.47000 * 299.99604 * 13 12 10 37 37 H 1.08998 * 109.47495 * 60.00061 * 13 12 10 38 38 H 1.08997 * 109.47555 * 299.99706 * 14 13 12 39 39 H 1.09002 * 109.47073 * 60.00179 * 14 13 12 40 40 H 0.96996 * 120.00150 * 179.97438 * 18 17 15 41 41 H 1.08002 * 119.99673 * 179.97438 * 23 5 4 42 42 H 1.08000 * 120.00005 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0060 6 6 5.7787 -0.0001 0.0117 7 6 6.2831 -0.0030 1.4562 8 1 5.8465 -0.8459 1.9919 9 6 5.8758 1.3030 2.1413 10 6 7.7851 -0.1268 1.4635 11 8 8.3921 -0.2055 0.4164 12 7 8.4536 -0.1501 2.6334 13 6 9.9137 -0.2699 2.6405 14 6 10.4182 -0.2729 4.0849 15 6 11.9201 -0.3968 4.0922 16 1 12.4607 -0.4669 3.1598 17 6 12.6040 -0.4218 5.2891 18 7 13.9147 -0.5294 5.2955 19 14 11.6690 -0.3013 6.9017 20 1 11.3055 -1.6641 7.3661 21 1 12.5239 0.3576 7.9216 22 1 10.4341 0.4984 6.6994 23 6 3.5805 -1.1972 0.0000 24 6 2.1981 -1.1972 -0.0058 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5137 27 1 -0.3633 0.8900 0.5139 28 1 1.6582 2.1325 0.0004 29 1 4.1205 2.1324 0.0104 30 1 6.1439 -0.8890 -0.5025 31 1 6.1439 0.8909 -0.4990 32 1 4.7895 1.3927 2.1360 33 1 6.2348 1.3008 3.1704 34 1 6.3125 2.1459 1.6055 35 1 7.9681 -0.0875 3.4708 36 1 10.2043 -1.2004 2.1527 37 1 10.3501 0.5730 2.1046 38 1 10.1277 0.6573 4.5732 39 1 9.9819 -1.1161 4.6204 40 1 14.3958 -0.5466 6.1375 41 1 4.1205 -2.1325 -0.0002 42 1 1.6581 -2.1325 -0.0109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273078592.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = -64.999816 kcal Electronic energy + Delta-G solvation = -20194.141935 eV Core-core repulsion = 17136.849563 eV Total energy + Delta-G solvation = -3057.292372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13857 -40.15215 -36.79438 -36.15730 -34.81321 -33.22769 -31.84899 -31.74924 -29.16898 -27.08105 -26.29092 -24.01602 -23.46533 -22.59690 -21.61975 -20.72708 -19.00563 -18.18883 -16.87699 -16.79152 -16.62088 -16.26879 -16.21855 -15.86779 -15.35435 -15.06960 -14.66001 -14.54039 -14.39021 -14.19730 -13.82387 -13.42045 -13.34804 -13.19252 -13.04387 -12.88611 -12.75689 -12.25022 -12.17540 -12.06932 -11.98753 -11.84354 -11.76469 -11.70153 -11.52185 -10.79553 -10.73407 -10.04617 -9.76455 -9.32929 -8.30696 -6.38207 0.44341 0.54879 1.38734 1.41492 1.52786 1.65805 2.27261 2.36389 2.87906 3.04210 3.64164 3.86620 3.92089 4.07141 4.09588 4.21010 4.23218 4.33816 4.40963 4.44506 4.50649 4.65657 4.73858 4.77240 4.85261 4.87568 4.90364 4.94789 5.02811 5.14839 5.18152 5.24550 5.29875 5.35287 5.39492 5.43154 5.57005 5.64370 5.76053 5.78799 6.17959 6.21369 6.61038 6.70569 7.26136 7.29485 8.86095 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036761 B = 0.002788 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.496994 B =10040.515169 C =10374.279166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.127 4.127 4 C -0.117 4.117 5 C -0.091 4.091 6 C -0.056 4.056 7 C -0.092 4.092 8 H 0.115 0.885 9 C -0.143 4.143 10 C 0.508 3.492 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.144 3.856 14 C -0.012 4.012 15 C -0.540 4.540 16 H 0.027 0.973 17 C 0.002 3.998 18 N -0.951 5.951 19 Si 0.960 3.040 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.236 1.236 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.138 0.862 29 H 0.130 0.870 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.413 0.587 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.268 0.732 41 H 0.125 0.875 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.343 2.559 -6.300 32.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.145 4.145 4 C -0.135 4.135 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.113 4.113 8 H 0.133 0.867 9 C -0.200 4.200 10 C 0.296 3.704 11 O -0.472 6.472 12 N -0.367 5.367 13 C 0.020 3.980 14 C -0.050 4.050 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.195 4.195 18 N -0.591 5.591 19 Si 0.782 3.218 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.159 1.159 23 C -0.142 4.142 24 C -0.145 4.145 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.250 0.750 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.143 0.857 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -30.751 2.499 -6.928 31.621 hybrid contribution 0.721 -0.141 0.743 1.044 sum -30.031 2.358 -6.185 30.752 Atomic orbital electron populations 1.20823 0.89690 1.03542 1.02890 1.20261 0.97359 0.93114 0.99281 1.21283 0.94005 0.98414 1.00762 1.21230 0.94573 0.97729 0.99966 1.19794 0.94550 0.93869 1.00884 1.20292 0.91057 1.03255 0.94812 1.21256 0.88710 1.02567 0.98800 0.86694 1.21864 1.03209 0.94336 1.00584 1.21366 0.91298 0.74790 0.82957 1.90668 1.71480 1.51812 1.33244 1.46100 1.07667 1.73661 1.09281 1.21018 0.79002 0.99648 0.98367 1.19649 0.94413 0.98063 0.92879 1.21261 0.92065 1.51150 0.93362 0.95433 1.26109 0.95738 0.93700 1.03911 1.70078 1.08982 1.51699 1.28293 0.85519 0.79461 0.79523 0.77249 1.18989 1.21246 1.15882 1.21235 0.94740 0.97829 1.00396 1.21259 0.93936 0.98479 1.00860 0.90631 0.90881 0.90728 0.84457 0.85222 0.91611 0.91309 0.89693 0.90964 0.92576 0.75030 0.93992 0.93951 0.94431 0.94640 0.92322 0.85655 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 2 C -0.10 -1.44 5.88 -19.87 -0.12 -1.55 16 3 C -0.13 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.12 -1.95 7.96 22.27 0.18 -1.77 16 5 C -0.09 -1.71 4.71 -19.86 -0.09 -1.81 16 6 C -0.06 -1.25 4.19 29.85 0.13 -1.12 16 7 C -0.09 -1.98 2.71 -11.54 -0.03 -2.01 16 8 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 9 C -0.14 -2.45 8.66 71.98 0.62 -1.83 16 10 C 0.51 15.96 7.15 87.66 0.63 16.59 16 11 O -0.59 -24.09 15.92 -3.04 -0.05 -24.13 16 12 N -0.72 -22.49 5.45 -463.05 -2.52 -25.01 16 13 C 0.14 5.93 5.61 86.38 0.48 6.42 16 14 C -0.01 -0.55 4.16 29.85 0.12 -0.43 16 15 C -0.54 -31.04 9.66 25.60 0.25 -30.80 16 16 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 17 C 0.00 0.14 5.47 84.65 0.46 0.61 16 18 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 19 Si 0.96 42.29 27.47 68.60 1.88 44.18 16 20 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.24 -9.18 6.54 99.48 0.65 -8.53 16 23 C -0.12 -2.20 9.70 22.27 0.22 -1.99 16 24 C -0.13 -1.97 9.70 22.27 0.22 -1.75 16 25 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.56 8.09 -2.39 -0.02 0.54 16 27 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 28 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 29 H 0.13 1.89 8.04 -2.91 -0.02 1.86 16 30 H 0.07 1.64 7.90 -2.39 -0.02 1.62 16 31 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 32 H 0.08 1.24 6.27 -2.39 -0.01 1.22 16 33 H 0.07 1.11 7.56 -2.39 -0.02 1.09 16 34 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.41 10.10 7.89 -92.71 -0.73 9.37 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.04 1.57 7.20 -2.39 -0.02 1.55 16 39 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 41 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -72.45 346.70 3.81 -68.65 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.20 Total: 18.95 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 3.99 Total: -23.41 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -2.22 Total: -84.23 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Total: -72.45 3.81 -68.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273078592.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.646 kcal (2) G-P(sol) polarization free energy of solvation -72.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds