Wall clock time and date at job start Mon Mar 30 2020 01:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38282 * 119.88548 * 2 1 4 4 C 1.38386 * 120.07519 * 180.40132 * 3 2 1 5 5 C 1.38033 * 119.63611 * 359.86545 * 4 3 2 6 6 C 1.37940 * 120.54047 * 359.39829 * 5 4 3 7 7 C 1.38164 * 119.88502 * 180.02562 * 2 1 3 8 8 O 1.36143 * 120.35752 * 182.51970 * 6 5 4 9 9 C 1.43138 * 115.60980 * 70.31147 * 8 6 5 10 10 C 1.51431 * 110.94444 * 273.25020 * 9 8 6 11 11 C 1.52145 * 113.45481 * 65.44881 * 10 9 8 12 12 C 1.51652 * 120.00704 * 179.22062 * 5 4 3 13 13 H 1.09004 * 109.60148 * 351.51975 * 12 5 4 14 14 N 1.46901 * 109.59906 * 231.20316 * 12 5 4 15 15 C 1.46902 * 110.99931 * 84.99945 * 14 12 5 16 16 C 1.53001 * 109.47217 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09009 * 109.46939 * 90.00101 * 1 2 3 26 26 H 1.08995 * 109.47416 * 210.00153 * 1 2 3 27 27 H 1.08995 * 109.47470 * 330.01058 * 1 2 3 28 28 H 1.08003 * 119.96304 * 0.37923 * 3 2 1 29 29 H 1.07999 * 120.18228 * 179.89497 * 4 3 2 30 30 H 1.08008 * 120.16287 * 0.08089 * 7 2 1 31 31 H 1.08998 * 109.17889 * 33.62664 * 9 8 6 32 32 H 1.09004 * 109.18475 * 152.87239 * 9 8 6 33 33 H 1.08998 * 108.68811 * 186.47618 * 10 9 8 34 34 H 1.08997 * 108.68291 * 304.55465 * 10 9 8 35 35 H 1.09002 * 109.21238 * 172.12449 * 11 10 9 36 36 H 1.09006 * 109.21250 * 52.80352 * 11 10 9 37 37 H 1.00900 * 111.00210 * 321.05053 * 14 12 5 38 38 H 1.09002 * 109.46978 * 60.00184 * 15 14 12 39 39 H 1.08998 * 109.47251 * 299.99702 * 15 14 12 40 40 H 1.09007 * 109.46922 * 59.99765 * 16 15 14 41 41 H 1.09003 * 109.46836 * 300.00520 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1989 0.0000 4 6 3.5799 1.2035 -0.0084 5 6 4.2664 0.0061 -0.0139 6 6 3.5845 -1.1929 0.0013 7 6 2.1954 -1.1979 -0.0005 8 8 4.2652 -2.3711 0.0475 9 6 4.9230 -2.6575 1.2860 10 6 6.3068 -2.0435 1.3186 11 6 6.2949 -0.5222 1.3010 12 6 5.7826 0.0012 -0.0410 13 1 6.1487 1.0148 -0.2047 14 7 6.2534 -0.8735 -1.1232 15 6 6.2968 -0.1519 -2.4021 16 6 6.7913 -1.0932 -3.5023 17 6 6.8364 -0.3528 -4.8140 18 1 6.5423 0.6854 -4.8586 19 6 7.2533 -1.0009 -5.9575 20 7 7.6119 -2.2651 -5.9032 21 14 7.3085 -0.0833 -7.5836 22 1 7.7886 -0.9970 -8.6514 23 1 5.9477 0.4042 -7.9234 24 1 8.2340 1.0723 -7.4686 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5136 28 1 1.6536 2.1328 0.0062 29 1 4.1197 2.1389 -0.0101 30 1 1.6562 -2.1337 -0.0023 31 1 4.3319 -2.2524 2.1074 32 1 5.0075 -3.7377 1.4053 33 1 6.8162 -2.3783 2.2222 34 1 6.8659 -2.3966 0.4522 35 1 7.3072 -0.1536 1.4668 36 1 5.6467 -0.1592 2.0986 37 1 5.6806 -1.7011 -1.1944 38 1 6.9762 0.6963 -2.3178 39 1 5.2979 0.2059 -2.6515 40 1 6.1123 -1.9418 -3.5867 41 1 7.7903 -1.4508 -3.2526 42 1 7.9047 -2.7211 -6.7077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273188979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:29 Heat of formation + Delta-G solvation = -26.976484 kcal Electronic energy + Delta-G solvation = -21694.154426 eV Core-core repulsion = 18638.510869 eV Total energy + Delta-G solvation = -3055.643557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.74560 -37.76613 -36.39194 -33.81572 -32.85126 -32.14183 -30.35758 -29.21658 -27.48628 -26.33053 -24.19150 -23.58323 -22.35555 -20.82001 -20.39974 -19.78607 -17.35653 -16.63820 -16.24052 -15.83945 -15.30340 -14.68867 -14.41364 -14.29856 -14.05361 -13.89059 -13.71185 -13.51092 -13.17875 -12.52184 -12.39632 -12.32125 -12.14192 -11.90269 -11.71376 -11.31332 -11.11157 -10.92786 -10.83849 -10.63015 -10.48974 -10.41591 -9.92722 -9.83787 -9.28784 -9.09278 -8.71718 -8.35499 -8.27338 -7.70195 -5.92736 -3.94839 1.25463 1.35528 3.37644 3.41470 3.44136 3.44321 3.94139 4.49520 4.68711 4.77863 4.86346 4.93670 5.00503 5.07362 5.15160 5.26484 5.30723 5.37793 5.42901 5.48381 5.54854 5.59273 5.69937 5.77139 5.89973 5.99630 6.05960 6.08817 6.19977 6.35775 6.43366 6.50947 6.53135 6.58575 6.60860 6.78724 7.09170 7.57083 7.59756 7.84177 7.92743 8.11325 8.20486 8.52420 9.12126 9.68139 11.18769 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.004910 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.513119 B = 5701.729245 C = 6517.131895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.080 4.080 3 C -0.129 4.129 4 C -0.094 4.094 5 C -0.140 4.140 6 C 0.108 3.892 7 C -0.134 4.134 8 O -0.324 6.324 9 C 0.069 3.931 10 C -0.156 4.156 11 C -0.102 4.102 12 C 0.125 3.875 13 H 0.082 0.918 14 N -0.679 5.679 15 C 0.065 3.935 16 C 0.027 3.973 17 C -0.519 4.519 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.287 1.287 23 H -0.278 1.278 24 H -0.277 1.277 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.121 0.879 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.352 0.648 38 H 0.055 0.945 39 H 0.014 0.986 40 H 0.013 0.987 41 H 0.024 0.976 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.678 3.351 18.039 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 C -0.148 4.148 4 C -0.113 4.113 5 C -0.142 4.142 6 C 0.064 3.936 7 C -0.152 4.152 8 O -0.241 6.241 9 C -0.005 4.005 10 C -0.194 4.194 11 C -0.140 4.140 12 C 0.014 3.986 13 H 0.101 0.899 14 N -0.314 5.314 15 C -0.063 4.063 16 C -0.010 4.010 17 C -0.558 4.558 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.203 1.203 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.139 0.861 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.176 0.824 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.907 3.130 17.916 20.710 hybrid contribution -0.883 0.701 -1.111 1.583 sum -10.791 3.831 16.805 20.335 Atomic orbital electron populations 1.20773 0.91067 1.02533 1.02467 1.19731 0.95994 0.92607 0.99694 1.21041 0.94158 0.97415 1.02141 1.20957 0.93977 0.97223 0.99156 1.21249 0.98711 0.92931 1.01345 1.18421 0.90135 0.85144 0.99910 1.21141 0.92846 0.98245 1.03017 1.86276 1.66922 1.35321 1.35550 1.22539 0.92931 1.00638 0.84428 1.21634 0.97521 0.96241 1.03988 1.21325 1.01315 0.95623 0.95694 1.20776 0.86436 0.98102 0.93263 0.89936 1.60947 1.56571 1.08770 1.05108 1.22160 0.97984 0.97751 0.88401 1.19035 0.96915 0.94125 0.90953 1.21143 1.44200 0.97291 0.93202 0.92923 1.24994 0.95454 0.94878 0.98993 1.69971 1.44851 1.09778 1.28682 0.86665 0.78341 0.79606 0.83403 1.21280 1.20345 1.20264 0.91044 0.91634 0.91599 0.86054 0.85690 0.85489 0.93172 0.88603 0.91361 0.88588 0.91027 0.92717 0.82404 0.92691 0.96797 0.96873 0.95771 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 10.01 36.01 0.36 -0.64 16 2 C -0.08 -0.98 5.88 -104.63 -0.61 -1.59 16 3 C -0.13 -1.58 9.70 -39.51 -0.38 -1.96 16 4 C -0.09 -1.27 9.70 -39.60 -0.38 -1.65 16 5 C -0.14 -2.12 4.58 -104.34 -0.48 -2.59 16 6 C 0.11 1.65 5.29 -39.44 -0.21 1.45 16 7 C -0.13 -1.84 9.65 -39.36 -0.38 -2.22 16 8 O -0.32 -5.05 8.01 -20.20 -0.16 -5.21 16 9 C 0.07 0.83 6.48 36.36 0.24 1.07 16 10 C -0.16 -1.92 5.28 -27.96 -0.15 -2.07 16 11 C -0.10 -1.30 5.55 -27.23 -0.15 -1.45 16 12 C 0.13 1.95 2.69 -68.46 -0.18 1.76 16 13 H 0.08 1.26 7.60 -51.93 -0.39 0.87 16 14 N -0.68 -13.04 4.94 -107.51 -0.53 -13.57 16 15 C 0.07 1.47 5.42 -3.82 -0.02 1.45 16 16 C 0.03 0.75 5.23 -27.89 -0.15 0.60 16 17 C -0.52 -15.34 9.11 -34.44 -0.31 -15.65 16 18 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.72 13.29 55.43 0.74 -26.98 16 21 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 27 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 28 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 29 H 0.13 1.46 7.99 -52.49 -0.42 1.04 16 30 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.05 0.54 7.90 -51.93 -0.41 0.13 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.43 6.79 -51.93 -0.35 1.08 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 37 H 0.35 7.07 5.28 -39.29 -0.21 6.86 16 38 H 0.05 1.22 8.06 -51.93 -0.42 0.80 16 39 H 0.01 0.32 8.01 -51.93 -0.42 -0.10 16 40 H 0.01 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -32.13 333.82 -9.65 -41.78 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.79 Total: 3.57 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -2.91 Total: -21.87 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.21 Total: -40.55 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.16 Total: -5.21 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.13 -9.65 -41.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273188979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds