Wall clock time and date at job start Mon Mar 30 2020 01:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38282 * 119.88548 * 2 1 4 4 C 1.38386 * 120.07519 * 180.40132 * 3 2 1 5 5 C 1.38033 * 119.63611 * 359.86545 * 4 3 2 6 6 C 1.37940 * 120.54047 * 359.39829 * 5 4 3 7 7 C 1.38164 * 119.88502 * 180.02562 * 2 1 3 8 8 O 1.36143 * 120.35752 * 182.51970 * 6 5 4 9 9 C 1.43138 * 115.60980 * 70.31147 * 8 6 5 10 10 C 1.51431 * 110.94444 * 273.25020 * 9 8 6 11 11 C 1.52145 * 113.45481 * 65.44881 * 10 9 8 12 12 C 1.51652 * 120.00704 * 179.22062 * 5 4 3 13 13 H 1.09004 * 109.60148 * 351.51975 * 12 5 4 14 14 N 1.46901 * 109.59906 * 231.20316 * 12 5 4 15 15 C 1.46902 * 110.99931 * 84.99945 * 14 12 5 16 16 C 1.53001 * 109.47217 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47168 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09009 * 109.46939 * 90.00101 * 1 2 3 26 26 H 1.08995 * 109.47416 * 210.00153 * 1 2 3 27 27 H 1.08995 * 109.47470 * 330.01058 * 1 2 3 28 28 H 1.08003 * 119.96304 * 0.37923 * 3 2 1 29 29 H 1.07999 * 120.18228 * 179.89497 * 4 3 2 30 30 H 1.08008 * 120.16287 * 0.08089 * 7 2 1 31 31 H 1.08998 * 109.17889 * 33.62664 * 9 8 6 32 32 H 1.09004 * 109.18475 * 152.87239 * 9 8 6 33 33 H 1.08998 * 108.68811 * 186.47618 * 10 9 8 34 34 H 1.08997 * 108.68291 * 304.55465 * 10 9 8 35 35 H 1.09002 * 109.21238 * 172.12449 * 11 10 9 36 36 H 1.09006 * 109.21250 * 52.80352 * 11 10 9 37 37 H 1.00900 * 111.00210 * 321.05053 * 14 12 5 38 38 H 1.09002 * 109.46978 * 60.00184 * 15 14 12 39 39 H 1.08998 * 109.47251 * 299.99702 * 15 14 12 40 40 H 1.09007 * 109.46922 * 59.99765 * 16 15 14 41 41 H 1.09003 * 109.46836 * 300.00520 * 16 15 14 42 42 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1989 0.0000 4 6 3.5799 1.2035 -0.0084 5 6 4.2664 0.0061 -0.0139 6 6 3.5845 -1.1929 0.0013 7 6 2.1954 -1.1979 -0.0005 8 8 4.2652 -2.3711 0.0475 9 6 4.9230 -2.6575 1.2860 10 6 6.3068 -2.0435 1.3186 11 6 6.2949 -0.5222 1.3010 12 6 5.7826 0.0012 -0.0410 13 1 6.1487 1.0148 -0.2047 14 7 6.2534 -0.8735 -1.1232 15 6 6.2968 -0.1519 -2.4021 16 6 6.7913 -1.0932 -3.5023 17 6 6.8364 -0.3528 -4.8140 18 1 6.5423 0.6854 -4.8586 19 6 7.2533 -1.0009 -5.9575 20 7 7.6119 -2.2651 -5.9032 21 14 7.3085 -0.0833 -7.5836 22 1 7.7886 -0.9970 -8.6514 23 1 5.9477 0.4042 -7.9234 24 1 8.2340 1.0723 -7.4686 25 1 -0.3633 0.0000 -1.0278 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5136 28 1 1.6536 2.1328 0.0062 29 1 4.1197 2.1389 -0.0101 30 1 1.6562 -2.1337 -0.0023 31 1 4.3319 -2.2524 2.1074 32 1 5.0075 -3.7377 1.4053 33 1 6.8162 -2.3783 2.2222 34 1 6.8659 -2.3966 0.4522 35 1 7.3072 -0.1536 1.4668 36 1 5.6467 -0.1592 2.0986 37 1 5.6806 -1.7011 -1.1944 38 1 6.9762 0.6963 -2.3178 39 1 5.2979 0.2059 -2.6515 40 1 6.1123 -1.9418 -3.5867 41 1 7.7903 -1.4508 -3.2526 42 1 7.9047 -2.7211 -6.7077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273188979.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:28 Heat of formation + Delta-G solvation = -45.666575 kcal Electronic energy + Delta-G solvation = -21694.964889 eV Core-core repulsion = 18638.510869 eV Total energy + Delta-G solvation = -3056.454020 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.82036 -38.76199 -37.76169 -35.64506 -34.16534 -33.58714 -31.57519 -30.64366 -28.90580 -27.27401 -26.02412 -24.81760 -23.43745 -22.45879 -21.71745 -20.93499 -18.61566 -18.28999 -17.71921 -17.05517 -16.53656 -16.34184 -15.80044 -15.48750 -15.33292 -15.13796 -14.88243 -14.51902 -14.40251 -14.16721 -13.76359 -13.48130 -13.24709 -13.06293 -12.94170 -12.87688 -12.74058 -12.45917 -12.25321 -12.14580 -11.83881 -11.65361 -11.50725 -11.38386 -11.20240 -10.89713 -10.57570 -9.74076 -9.40840 -9.22065 -8.20821 -6.33156 0.24264 0.33810 1.38395 1.42646 1.50590 2.39757 2.46417 2.89619 3.11892 3.43313 3.68029 3.87245 3.98143 4.00301 4.09059 4.18028 4.28330 4.38286 4.46597 4.47349 4.56106 4.60833 4.64664 4.80036 4.82896 4.88148 4.92515 4.99167 5.04719 5.09377 5.17348 5.24592 5.37584 5.39702 5.48182 5.51019 5.58749 5.66100 5.78159 5.84894 6.14961 6.30171 6.53676 6.58770 6.83187 7.35877 8.91443 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016879 B = 0.004910 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.513119 B = 5701.729245 C = 6517.131895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.132 4.132 4 C -0.102 4.102 5 C -0.161 4.161 6 C 0.088 3.912 7 C -0.151 4.151 8 O -0.350 6.350 9 C 0.065 3.935 10 C -0.153 4.153 11 C -0.097 4.097 12 C 0.122 3.878 13 H 0.083 0.917 14 N -0.681 5.681 15 C 0.086 3.914 16 C 0.037 3.963 17 C -0.546 4.546 18 H 0.059 0.941 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.268 1.268 24 H -0.264 1.264 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.150 0.850 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.347 0.653 38 H 0.059 0.941 39 H 0.005 0.995 40 H -0.019 1.019 41 H -0.005 1.005 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.927 4.983 18.619 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.150 4.150 4 C -0.121 4.121 5 C -0.163 4.163 6 C 0.045 3.955 7 C -0.169 4.169 8 O -0.267 6.267 9 C -0.009 4.009 10 C -0.191 4.191 11 C -0.135 4.135 12 C 0.012 3.988 13 H 0.101 0.899 14 N -0.316 5.316 15 C -0.043 4.043 16 C -0.001 4.001 17 C -0.584 4.584 18 H 0.077 0.923 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.793 3.207 22 H -0.206 1.206 23 H -0.193 1.193 24 H -0.189 1.189 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.104 0.896 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.170 0.830 38 H 0.078 0.922 39 H 0.023 0.977 40 H -0.001 1.001 41 H 0.014 0.986 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.161 4.772 18.527 22.149 hybrid contribution -0.529 0.152 -1.228 1.345 sum -11.690 4.924 17.299 21.451 Atomic orbital electron populations 1.20839 0.88644 1.04078 1.03095 1.20150 0.97790 0.92030 0.97940 1.21400 0.93811 0.98647 1.01132 1.21230 0.94888 0.97198 0.98761 1.21214 0.98157 0.93679 1.03287 1.18696 0.90952 0.85141 1.00719 1.21376 0.92464 0.99437 1.03620 1.86234 1.67376 1.35694 1.37377 1.22739 0.92637 1.01766 0.83765 1.21614 0.97633 0.95957 1.03901 1.21311 1.01841 0.95910 0.94432 1.20875 0.87444 0.97391 0.93098 0.89906 1.60902 1.57335 1.08982 1.04350 1.21753 0.97102 0.96640 0.88768 1.18862 0.94586 0.93965 0.92679 1.21553 1.44723 0.97831 0.94327 0.92275 1.26010 0.94559 0.95767 1.03367 1.70118 1.45360 1.11597 1.30076 0.85443 0.78945 0.78401 0.77893 1.20551 1.19264 1.18912 0.90696 0.90609 0.89642 0.83264 0.84261 0.84733 0.91686 0.86991 0.88567 0.91654 0.90489 0.90900 0.83050 0.92242 0.97655 1.00063 0.98636 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.08 -1.78 5.88 -19.87 -0.12 -1.90 16 3 C -0.13 -2.93 9.70 22.32 0.22 -2.72 16 4 C -0.10 -2.62 9.70 22.26 0.22 -2.40 16 5 C -0.16 -4.82 4.58 -19.68 -0.09 -4.91 16 6 C 0.09 2.72 5.29 22.36 0.12 2.84 16 7 C -0.15 -4.03 9.65 22.41 0.22 -3.82 16 8 O -0.35 -11.12 8.01 -95.18 -0.76 -11.88 16 9 C 0.06 1.52 6.48 71.47 0.46 1.99 16 10 C -0.15 -3.69 5.28 29.80 0.16 -3.53 16 11 C -0.10 -2.39 5.55 30.27 0.17 -2.22 16 12 C 0.12 3.79 2.69 44.43 0.12 3.91 16 13 H 0.08 2.51 7.60 -2.39 -0.02 2.49 16 14 N -0.68 -27.05 4.94 -494.06 -2.44 -29.49 16 15 C 0.09 4.03 5.42 86.30 0.47 4.50 16 16 C 0.04 2.11 5.23 29.85 0.16 2.26 16 17 C -0.55 -32.89 9.11 25.60 0.23 -32.65 16 18 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.00 0.06 5.46 84.66 0.46 0.52 16 20 N -0.93 -59.07 13.29 21.45 0.28 -58.79 16 21 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 22 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.07 1.01 8.08 -2.39 -0.02 0.99 16 27 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 3.03 7.99 -2.91 -0.02 3.01 16 30 H 0.13 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.06 1.32 7.90 -2.39 -0.02 1.30 16 32 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 2.00 6.79 -2.39 -0.02 1.98 16 35 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.54 7.90 -2.38 -0.02 1.53 16 37 H 0.35 14.59 5.28 -89.69 -0.47 14.12 16 38 H 0.06 2.69 8.06 -2.39 -0.02 2.67 16 39 H 0.01 0.25 8.01 -2.39 -0.02 0.23 16 40 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 41 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 42 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.96 333.82 3.13 -67.83 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.52 Total: 23.67 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 3.50 Total: -39.10 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -2.16 Total: -88.28 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.76 Total: -11.88 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -70.96 3.13 -67.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273188979.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.166 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds