Wall clock time and date at job start Mon Mar 30 2020 01:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 337.78781 * 7 2 1 9 9 N 1.36937 * 119.99840 * 157.77450 * 7 2 1 10 10 C 1.46499 * 120.00204 * 321.42610 * 9 7 2 11 11 C 1.53006 * 109.47000 * 269.99959 * 10 9 7 12 12 C 1.52999 * 109.46800 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46825 * 180.02562 * 12 11 10 14 14 C 1.42907 * 113.99920 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.46776 * 179.97438 * 14 13 12 16 16 C 1.38236 * 119.99788 * 269.72147 * 15 14 13 17 17 C 1.38238 * 119.99693 * 179.77179 * 16 15 14 18 18 C 1.38238 * 119.99976 * 0.50650 * 17 16 15 19 19 C 1.38233 * 119.99989 * 359.74532 * 18 17 16 20 20 C 1.38229 * 119.99898 * 0.02562 * 19 18 17 21 21 C 1.46505 * 119.99883 * 141.42662 * 9 7 2 22 22 C 1.53006 * 117.49670 * 3.19117 * 21 9 7 23 23 C 1.52998 * 117.49913 * 294.53331 * 21 9 7 24 24 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47161 * 29.99961 * 10 9 7 26 26 H 1.09000 * 109.47313 * 150.00403 * 10 9 7 27 27 H 1.08998 * 109.47165 * 299.99999 * 11 10 9 28 28 H 1.08994 * 109.47147 * 60.00189 * 11 10 9 29 29 H 1.08998 * 109.47166 * 299.99882 * 12 11 10 30 30 H 1.09000 * 109.47508 * 60.00447 * 12 11 10 31 31 H 1.08998 * 109.46529 * 299.99646 * 14 13 12 32 32 H 1.09000 * 109.47099 * 59.99762 * 14 13 12 33 33 H 1.07996 * 120.00381 * 0.02562 * 16 15 14 34 34 H 1.08005 * 120.00090 * 180.23330 * 17 16 15 35 35 H 1.08004 * 119.99938 * 179.72658 * 18 17 16 36 36 H 1.07998 * 119.99779 * 179.97438 * 19 18 17 37 37 H 1.08007 * 120.00215 * 179.97438 * 20 19 18 38 38 H 1.09001 * 115.55232 * 148.85853 * 21 9 7 39 39 H 1.08993 * 117.49982 * 0.02562 * 22 21 9 40 40 H 1.09000 * 117.49376 * 145.01943 * 22 21 9 41 41 H 1.09001 * 117.50045 * 214.98064 * 23 21 9 42 42 H 1.09006 * 117.49626 * 359.97234 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0102 -1.2022 0.0005 8 1 1.5303 -2.1026 0.3545 9 7 3.3033 -1.2464 -0.4480 10 6 3.7040 -0.4466 -1.6082 11 6 3.5030 -1.2647 -2.8855 12 6 3.9220 -0.4296 -4.0971 13 8 3.7337 -1.1934 -5.2901 14 6 4.0977 -0.5019 -6.4865 15 6 3.8602 -1.3964 -7.6758 16 6 4.8691 -2.2253 -8.1296 17 6 4.6497 -3.0494 -9.2176 18 6 3.4247 -3.0369 -9.8582 19 6 2.4176 -2.2042 -9.4076 20 6 2.6355 -1.3836 -8.3167 21 6 4.2861 -2.0936 0.2323 22 6 3.7893 -2.9613 1.3905 23 6 4.6552 -1.7308 1.6721 24 1 -0.4850 0.8401 0.0004 25 1 3.0947 0.4560 -1.6552 26 1 4.7545 -0.1715 -1.5146 27 1 4.1122 -2.1673 -2.8385 28 1 2.4525 -1.5398 -2.9792 29 1 3.3131 0.4732 -4.1442 30 1 4.9726 -0.1549 -4.0032 31 1 3.4931 0.3999 -6.5832 32 1 5.1522 -0.2293 -6.4422 33 1 5.8274 -2.2321 -7.6316 34 1 5.4367 -3.6998 -9.5699 35 1 3.2548 -3.6775 -10.7109 36 1 1.4608 -2.1941 -9.9083 37 1 1.8487 -0.7327 -7.9648 38 1 5.0732 -2.5024 -0.4013 39 1 2.7314 -2.9022 1.6459 40 1 4.2500 -3.9408 1.5190 41 1 5.6850 -1.9012 1.9859 42 1 4.1671 -0.8615 2.1130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273198618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:03 Heat of formation + Delta-G solvation = 25.525553 kcal Electronic energy + Delta-G solvation = -20469.761465 eV Core-core repulsion = 17416.394567 eV Total energy + Delta-G solvation = -3053.366898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.45170 -37.75833 -37.12083 -34.15458 -32.45377 -31.64766 -31.02563 -29.86069 -26.26669 -24.89949 -23.56348 -22.70408 -21.66114 -21.44415 -20.91733 -19.60407 -17.04080 -16.73363 -16.14334 -15.92060 -15.54874 -15.44003 -15.21384 -14.75608 -14.01111 -13.73878 -13.55596 -13.23375 -12.90491 -12.68019 -12.54075 -12.09377 -12.03873 -12.01221 -11.24178 -11.08660 -10.96836 -10.84678 -10.75903 -10.55681 -10.32203 -9.94492 -9.72859 -9.46262 -9.40137 -9.38487 -9.04126 -8.94794 -8.52106 -6.73123 -6.03176 -3.45627 1.15099 1.28094 3.26252 3.43547 3.49399 3.50511 4.09921 4.48468 4.69878 4.71880 4.81827 4.87192 4.95192 5.02239 5.16339 5.27875 5.30326 5.41114 5.45212 5.54079 5.63508 5.80761 5.84250 5.89517 5.91531 5.96875 6.01554 6.09603 6.29844 6.31043 6.36260 6.36752 6.43878 6.49786 6.52099 6.81815 6.85450 6.93248 7.02652 7.12859 7.41572 8.03627 8.38812 8.96705 9.67631 10.08153 11.11752 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.003567 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.107895 B = 7846.798438 C = 8418.188774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.040 3.960 3 Si 0.873 3.127 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.266 1.266 7 C -0.270 4.270 8 H 0.083 0.917 9 N -0.573 5.573 10 C 0.145 3.855 11 C -0.131 4.131 12 C 0.063 3.937 13 O -0.380 6.380 14 C 0.099 3.901 15 C -0.085 4.085 16 C -0.100 4.100 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.099 4.099 21 C 0.120 3.880 22 C -0.188 4.188 23 C -0.224 4.224 24 H 0.264 0.736 25 H 0.055 0.945 26 H 0.041 0.959 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.090 -2.290 -16.014 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.161 4.161 3 Si 0.703 3.297 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.191 1.191 7 C -0.398 4.398 8 H 0.100 0.900 9 N -0.291 5.291 10 C 0.019 3.981 11 C -0.171 4.171 12 C -0.014 4.014 13 O -0.299 6.299 14 C 0.023 3.977 15 C -0.085 4.085 16 C -0.118 4.118 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.142 4.142 20 C -0.117 4.117 21 C 0.012 3.988 22 C -0.226 4.226 23 C -0.265 4.265 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.109 0.891 39 H 0.121 0.879 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.828 -2.366 -16.007 18.932 hybrid contribution 0.434 1.259 0.094 1.335 sum 10.262 -1.107 -15.913 18.967 Atomic orbital electron populations 1.69866 1.05983 1.26785 1.50975 1.25487 0.95060 0.97722 0.97862 0.86978 0.80987 0.84741 0.77000 1.21350 1.22833 1.19058 1.18742 0.85817 0.94458 1.40775 0.89963 1.43641 1.06927 1.50705 1.27862 1.21039 0.97450 0.93836 0.85736 1.22138 1.03376 0.99228 0.92396 1.22633 0.99022 0.95008 0.84765 1.88004 1.87134 1.41421 1.13380 1.21280 0.99254 0.93490 0.83692 1.19682 0.94415 0.98392 0.96000 1.21080 0.99072 0.95332 0.96351 1.21136 0.97465 0.99338 0.96402 1.21178 0.93621 0.98941 0.99948 1.21154 0.99219 0.96722 0.97104 1.21128 0.96313 0.98883 0.95345 1.21157 0.94146 0.97002 0.86525 1.23062 1.01002 0.93443 1.05090 1.23386 0.98331 0.99719 1.05077 0.92630 0.92708 0.94016 0.92004 0.90367 0.93524 0.93858 0.92613 0.92747 0.85968 0.86020 0.86139 0.85938 0.85800 0.89093 0.87894 0.90473 0.90838 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.07 13.97 55.49 0.78 -26.29 16 2 C 0.04 1.13 5.30 -17.43 -0.09 1.04 16 3 Si 0.87 21.93 25.08 -169.99 -4.26 17.67 16 4 H -0.29 -6.89 6.69 56.52 0.38 -6.52 16 5 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.27 -7.43 8.95 -15.06 -0.13 -7.56 16 8 H 0.08 2.45 6.86 -52.48 -0.36 2.09 16 9 N -0.57 -13.58 2.39 -165.65 -0.40 -13.97 16 10 C 0.15 3.09 4.55 -4.04 -0.02 3.08 16 11 C -0.13 -2.55 5.91 -26.73 -0.16 -2.70 16 12 C 0.06 1.03 5.94 37.16 0.22 1.25 16 13 O -0.38 -6.28 10.33 -35.23 -0.36 -6.64 16 14 C 0.10 1.28 6.06 36.00 0.22 1.50 16 15 C -0.08 -1.06 5.51 -104.63 -0.58 -1.64 16 16 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 17 C -0.13 -1.25 10.05 -39.58 -0.40 -1.64 16 18 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 19 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 20 C -0.10 -1.17 9.70 -39.59 -0.38 -1.55 16 21 C 0.12 2.46 6.56 -67.93 -0.45 2.01 16 22 C -0.19 -3.64 9.80 -26.69 -0.26 -3.91 16 23 C -0.22 -4.33 10.36 -26.69 -0.28 -4.61 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.06 1.27 3.40 -51.93 -0.18 1.10 16 26 H 0.04 0.79 8.07 -51.93 -0.42 0.37 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 32 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 35 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.10 2.25 6.44 -51.93 -0.33 1.92 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 LS Contribution 345.84 15.07 5.21 5.21 Total: -1.00 -30.89 345.84 -9.31 -40.20 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.79 Total: 3.30 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -3.49 Total: -19.47 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.38 Total: -40.26 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.36 Total: -6.64 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.26 Total: 17.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.89 -9.31 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273198618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.725 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds