Wall clock time and date at job start Mon Mar 30 2020 01:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00262 * 2 1 4 4 H 1.48494 * 109.47472 * 275.68090 * 3 2 1 5 5 H 1.48510 * 109.47018 * 35.68258 * 3 2 1 6 6 H 1.48501 * 109.46998 * 155.67568 * 3 2 1 7 7 C 1.38811 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00205 * 337.78781 * 7 2 1 9 9 N 1.36937 * 119.99840 * 157.77450 * 7 2 1 10 10 C 1.46499 * 120.00204 * 321.42610 * 9 7 2 11 11 C 1.53006 * 109.47000 * 269.99959 * 10 9 7 12 12 C 1.52999 * 109.46800 * 180.02562 * 11 10 9 13 13 O 1.42904 * 109.46825 * 180.02562 * 12 11 10 14 14 C 1.42907 * 113.99920 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.46776 * 179.97438 * 14 13 12 16 16 C 1.38236 * 119.99788 * 269.72147 * 15 14 13 17 17 C 1.38238 * 119.99693 * 179.77179 * 16 15 14 18 18 C 1.38238 * 119.99976 * 0.50650 * 17 16 15 19 19 C 1.38233 * 119.99989 * 359.74532 * 18 17 16 20 20 C 1.38229 * 119.99898 * 0.02562 * 19 18 17 21 21 C 1.46505 * 119.99883 * 141.42662 * 9 7 2 22 22 C 1.53006 * 117.49670 * 3.19117 * 21 9 7 23 23 C 1.52998 * 117.49913 * 294.53331 * 21 9 7 24 24 H 0.96999 * 119.99752 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47161 * 29.99961 * 10 9 7 26 26 H 1.09000 * 109.47313 * 150.00403 * 10 9 7 27 27 H 1.08998 * 109.47165 * 299.99999 * 11 10 9 28 28 H 1.08994 * 109.47147 * 60.00189 * 11 10 9 29 29 H 1.08998 * 109.47166 * 299.99882 * 12 11 10 30 30 H 1.09000 * 109.47508 * 60.00447 * 12 11 10 31 31 H 1.08998 * 109.46529 * 299.99646 * 14 13 12 32 32 H 1.09000 * 109.47099 * 59.99762 * 14 13 12 33 33 H 1.07996 * 120.00381 * 0.02562 * 16 15 14 34 34 H 1.08005 * 120.00090 * 180.23330 * 17 16 15 35 35 H 1.08004 * 119.99938 * 179.72658 * 18 17 16 36 36 H 1.07998 * 119.99779 * 179.97438 * 19 18 17 37 37 H 1.08007 * 120.00215 * 179.97438 * 20 19 18 38 38 H 1.09001 * 115.55232 * 148.85853 * 21 9 7 39 39 H 1.08993 * 117.49982 * 0.02562 * 22 21 9 40 40 H 1.09000 * 117.49376 * 145.01943 * 22 21 9 41 41 H 1.09001 * 117.50045 * 214.98064 * 23 21 9 42 42 H 1.09006 * 117.49626 * 359.97234 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3778 2.1157 -1.3931 5 1 1.5129 2.6150 0.8167 6 1 3.6026 1.4084 0.5767 7 6 2.0102 -1.2022 0.0005 8 1 1.5303 -2.1026 0.3545 9 7 3.3033 -1.2464 -0.4480 10 6 3.7040 -0.4466 -1.6082 11 6 3.5030 -1.2647 -2.8855 12 6 3.9220 -0.4296 -4.0971 13 8 3.7337 -1.1934 -5.2901 14 6 4.0977 -0.5019 -6.4865 15 6 3.8602 -1.3964 -7.6758 16 6 4.8691 -2.2253 -8.1296 17 6 4.6497 -3.0494 -9.2176 18 6 3.4247 -3.0369 -9.8582 19 6 2.4176 -2.2042 -9.4076 20 6 2.6355 -1.3836 -8.3167 21 6 4.2861 -2.0936 0.2323 22 6 3.7893 -2.9613 1.3905 23 6 4.6552 -1.7308 1.6721 24 1 -0.4850 0.8401 0.0004 25 1 3.0947 0.4560 -1.6552 26 1 4.7545 -0.1715 -1.5146 27 1 4.1122 -2.1673 -2.8385 28 1 2.4525 -1.5398 -2.9792 29 1 3.3131 0.4732 -4.1442 30 1 4.9726 -0.1549 -4.0032 31 1 3.4931 0.3999 -6.5832 32 1 5.1522 -0.2293 -6.4422 33 1 5.8274 -2.2321 -7.6316 34 1 5.4367 -3.6998 -9.5699 35 1 3.2548 -3.6775 -10.7109 36 1 1.4608 -2.1941 -9.9083 37 1 1.8487 -0.7327 -7.9648 38 1 5.0732 -2.5024 -0.4013 39 1 2.7314 -2.9022 1.6459 40 1 4.2500 -3.9408 1.5190 41 1 5.6850 -1.9012 1.9859 42 1 4.1671 -0.8615 2.1130 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273198618.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:02 Heat of formation + Delta-G solvation = 8.662968 kcal Electronic energy + Delta-G solvation = -20470.492682 eV Core-core repulsion = 17416.394567 eV Total energy + Delta-G solvation = -3054.098114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.30469 -39.20405 -38.52836 -35.77666 -34.16316 -32.94756 -31.80633 -31.47591 -27.49497 -26.50428 -25.21927 -23.49251 -23.17176 -22.64978 -22.12489 -21.41245 -18.55760 -17.81533 -17.52302 -17.41242 -16.99248 -16.93269 -16.28523 -15.89137 -15.46350 -15.06281 -14.83486 -14.40683 -14.25582 -14.18651 -13.92251 -13.63292 -13.51029 -13.21203 -12.69949 -12.59780 -12.47237 -12.14683 -12.05515 -11.91624 -11.84132 -11.73692 -11.51115 -11.26387 -10.96783 -10.63824 -10.57171 -9.83978 -9.77584 -8.64572 -8.22067 -5.61215 0.32549 0.48275 1.26241 1.38635 1.50409 2.39236 2.53608 2.94991 3.10671 3.28868 3.35896 3.88091 3.89594 4.03255 4.13654 4.24281 4.28536 4.30674 4.32101 4.38053 4.41087 4.44828 4.49737 4.55794 4.63982 4.72680 4.73911 4.75530 4.94155 5.02708 5.06048 5.14074 5.22745 5.31118 5.41619 5.53407 5.53990 5.58947 5.66259 5.94186 6.08370 6.19229 6.24509 6.98554 7.61932 8.02470 8.97319 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.021383 B = 0.003567 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.107895 B = 7846.798438 C = 8418.188774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.017 4.017 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.309 1.309 6 H -0.255 1.255 7 C -0.255 4.255 8 H 0.043 0.957 9 N -0.588 5.588 10 C 0.141 3.859 11 C -0.120 4.120 12 C 0.069 3.931 13 O -0.404 6.404 14 C 0.096 3.904 15 C -0.109 4.109 16 C -0.112 4.112 17 C -0.129 4.129 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.120 4.120 21 C 0.103 3.897 22 C -0.189 4.189 23 C -0.210 4.210 24 H 0.263 0.737 25 H 0.035 0.965 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.141 0.859 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.357 -2.478 -17.449 22.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.214 4.214 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.238 1.238 6 H -0.179 1.179 7 C -0.384 4.384 8 H 0.060 0.940 9 N -0.308 5.308 10 C 0.016 3.984 11 C -0.160 4.160 12 C -0.008 4.008 13 O -0.324 6.324 14 C 0.021 3.979 15 C -0.109 4.109 16 C -0.130 4.130 17 C -0.147 4.147 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.138 4.138 21 C -0.004 4.004 22 C -0.227 4.227 23 C -0.250 4.250 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.159 0.841 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.140 -2.563 -17.455 21.998 hybrid contribution -0.578 1.156 0.484 1.380 sum 12.563 -1.406 -16.971 21.161 Atomic orbital electron populations 1.69998 1.07735 1.27437 1.53921 1.26086 0.95610 1.01140 0.98552 0.85938 0.79694 0.80249 0.77599 1.19627 1.23806 1.17915 1.18566 0.87620 0.93036 1.39225 0.93962 1.43768 1.06209 1.51570 1.29257 1.21128 0.98803 0.92911 0.85530 1.21905 1.00907 0.99797 0.93373 1.22483 1.00612 0.93855 0.83814 1.87954 1.87705 1.42388 1.14359 1.21461 1.00482 0.93553 0.82448 1.19814 0.95232 0.99469 0.96354 1.21324 0.99316 0.95380 0.97006 1.21503 0.98329 0.99089 0.95780 1.21568 0.93206 0.98634 1.00429 1.21456 1.00434 0.96393 0.96717 1.21310 0.96392 0.99763 0.96356 1.21523 0.94436 0.97025 0.87416 1.23043 0.99403 0.95479 1.04778 1.23361 0.99962 0.98265 1.03421 0.92822 0.94719 0.90576 0.91234 0.94552 0.93911 0.90751 0.92208 0.90731 0.84841 0.83500 0.83447 0.84109 0.86032 0.85645 0.91580 0.86929 0.86856 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.97 21.65 0.30 -59.52 16 2 C -0.02 -1.01 5.30 84.86 0.45 -0.56 16 3 Si 0.94 45.97 25.08 68.60 1.72 47.69 16 4 H -0.27 -12.39 6.69 99.48 0.67 -11.72 16 5 H -0.31 -15.48 7.11 99.48 0.71 -14.78 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.25 -14.50 8.95 84.03 0.75 -13.75 16 8 H 0.04 2.70 6.86 -2.91 -0.02 2.68 16 9 N -0.59 -27.56 2.39 -678.00 -1.62 -29.18 16 10 C 0.14 5.78 4.55 86.38 0.39 6.17 16 11 C -0.12 -4.55 5.91 30.60 0.18 -4.37 16 12 C 0.07 2.15 5.94 71.98 0.43 2.58 16 13 O -0.40 -12.97 10.33 -148.98 -1.54 -14.50 16 14 C 0.10 2.37 6.06 71.23 0.43 2.81 16 15 C -0.11 -2.63 5.51 -19.87 -0.11 -2.74 16 16 C -0.11 -2.35 9.70 22.27 0.22 -2.13 16 17 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 18 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 19 C -0.13 -2.56 10.05 22.27 0.22 -2.33 16 20 C -0.12 -2.81 9.70 22.27 0.22 -2.59 16 21 C 0.10 3.98 6.56 44.99 0.30 4.28 16 22 C -0.19 -7.10 9.80 30.62 0.30 -6.80 16 23 C -0.21 -7.56 10.36 30.62 0.32 -7.24 16 24 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.03 1.57 3.40 -2.39 -0.01 1.56 16 26 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 27 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.38 8.09 -2.39 -0.02 1.36 16 32 H 0.07 1.50 8.08 -2.39 -0.02 1.48 16 33 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 35 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.13 4.00 8.14 -2.39 -0.02 3.98 16 39 H 0.07 2.98 6.44 -2.39 -0.02 2.97 16 40 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -69.80 345.84 4.34 -65.46 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.93 Total: 20.60 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 4.54 Total: -30.55 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.32 Total: -88.70 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.54 Total: -14.50 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.72 Total: 47.69 kcal Total: -69.80 4.34 -65.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273198618.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.128 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds