Wall clock time and date at job start Mon Mar 30 2020 01:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 C 1.52998 * 109.47282 * 299.99654 * 6 5 4 8 8 C 1.53003 * 109.47218 * 59.99579 * 6 5 4 9 9 C 1.52999 * 109.47331 * 179.97438 * 6 5 4 10 10 N 1.46500 * 109.47528 * 179.97438 * 9 6 5 11 11 C 1.46496 * 120.00048 * 270.00534 * 10 9 6 12 12 C 1.34781 * 119.99823 * 89.99675 * 10 9 6 13 13 O 1.21687 * 119.99953 * 0.02562 * 12 10 9 14 14 C 1.46375 * 119.99830 * 180.02562 * 12 10 9 15 15 H 1.08004 * 120.00151 * 0.02562 * 14 12 10 16 16 C 1.40043 * 119.99860 * 180.02562 * 14 12 10 17 17 N 1.30674 * 120.00194 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 120.00092 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47123 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47130 * 120.00137 * 18 16 14 21 21 H 1.48503 * 109.47213 * 240.00030 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 5 4 24 24 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 25 25 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 26 26 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 29 29 H 1.08994 * 109.47122 * 59.99428 * 7 6 5 30 30 H 1.08990 * 109.47488 * 180.02562 * 7 6 5 31 31 H 1.09001 * 109.46885 * 299.99961 * 7 6 5 32 32 H 1.08995 * 109.47325 * 59.99840 * 8 6 5 33 33 H 1.09003 * 109.47092 * 180.02562 * 8 6 5 34 34 H 1.09001 * 109.46873 * 299.99885 * 8 6 5 35 35 H 1.09001 * 109.47089 * 300.00304 * 9 6 5 36 36 H 1.09001 * 109.47054 * 59.99906 * 9 6 5 37 37 H 1.09001 * 109.47632 * 89.99911 * 11 10 9 38 38 H 1.09002 * 109.47059 * 209.99729 * 11 10 9 39 39 H 1.09001 * 109.47406 * 329.99172 * 11 10 9 40 40 H 0.97005 * 120.00065 * 180.02562 * 17 16 14 41 41 H 1.07999 * 119.99934 * 180.25938 * 22 5 4 42 42 H 1.08001 * 120.00294 * 179.76453 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 6 6.2840 0.7236 -1.2599 8 6 6.2934 0.7188 1.2385 9 6 6.2887 -1.4425 -0.0142 10 7 7.7537 -1.4426 -0.0204 11 6 8.4808 -1.4408 -1.2922 12 6 8.4324 -1.4442 1.1440 13 8 7.8284 -1.4460 2.2004 14 6 9.8962 -1.4437 1.1378 15 1 10.4323 -1.4416 0.2003 16 6 10.6014 -1.4458 2.3477 17 7 9.9529 -1.4488 3.4821 18 14 12.4694 -1.4445 2.3399 19 1 12.9586 -1.4417 0.9378 20 1 12.9665 -0.2332 3.0406 21 1 12.9682 -2.6582 3.0352 22 6 3.5805 -1.1972 0.0010 23 6 2.1982 -1.1972 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 5.9206 1.7511 -1.2566 30 1 7.3739 0.7232 -1.2643 31 1 5.9173 0.2114 -2.1495 32 1 5.9335 0.2034 2.1289 33 1 7.3835 0.7192 1.2342 34 1 5.9301 1.7465 1.2418 35 1 5.9287 -1.9577 0.8763 36 1 5.9220 -1.9550 -0.9036 37 1 8.6613 -0.4127 -1.6062 38 1 9.4338 -1.9548 -1.1665 39 1 7.8886 -1.9536 -2.0501 40 1 10.4414 -1.4499 4.3202 41 1 4.1205 -2.1325 0.0013 42 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274694303.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:47 Heat of formation + Delta-G solvation = -20.269111 kcal Electronic energy + Delta-G solvation = -21762.211093 eV Core-core repulsion = 18706.858390 eV Total energy + Delta-G solvation = -3055.352703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.81731 -37.98610 -35.65386 -33.35706 -32.41674 -31.30560 -30.84262 -27.54578 -26.75136 -26.48156 -25.71708 -24.30008 -22.11221 -21.64419 -19.60729 -18.27231 -16.44037 -16.32231 -15.55448 -15.17165 -14.79638 -14.40023 -14.20372 -13.96360 -13.79164 -13.24161 -13.22429 -12.95507 -12.60888 -12.30232 -12.19057 -12.00591 -11.69555 -11.50891 -11.35131 -11.15060 -11.12913 -11.01088 -10.94126 -10.63730 -10.35335 -10.29056 -10.13857 -10.08928 -10.01026 -8.83768 -8.71105 -8.22661 -7.51859 -7.13528 -6.17121 -4.62021 1.56241 1.61153 3.12745 3.21512 3.25158 3.96007 4.10126 4.56044 4.61816 4.93193 4.95063 5.16334 5.25036 5.27807 5.50452 5.52976 5.54326 5.67007 5.72226 5.81841 5.83551 5.85876 6.01347 6.06181 6.18000 6.26556 6.27707 6.31680 6.46714 6.47698 6.59207 6.60223 6.63509 6.71814 6.74900 6.89291 7.02313 7.21175 7.28288 7.46418 7.67276 8.17779 8.39229 9.04823 9.47080 10.60549 10.80212 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.035549 B = 0.004188 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.461126 B = 6684.062424 C = 6857.076439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.104 4.104 3 C -0.122 4.122 4 C -0.113 4.113 5 C -0.055 4.055 6 C -0.042 4.042 7 C -0.135 4.135 8 C -0.120 4.120 9 C 0.138 3.862 10 N -0.645 5.645 11 C 0.100 3.900 12 C 0.558 3.442 13 O -0.571 6.571 14 C -0.545 4.545 15 H 0.071 0.929 16 C 0.088 3.912 17 N -0.766 5.766 18 Si 0.903 3.097 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.118 4.118 23 C -0.119 4.119 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.126 0.874 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.888 3.300 -9.237 15.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.140 4.140 4 C -0.131 4.131 5 C -0.056 4.056 6 C -0.044 4.044 7 C -0.192 4.192 8 C -0.177 4.177 9 C 0.013 3.987 10 N -0.383 5.383 11 C -0.044 4.044 12 C 0.364 3.636 13 O -0.453 6.453 14 C -0.581 4.581 15 H 0.089 0.911 16 C -0.132 4.132 17 N -0.395 5.395 18 Si 0.728 3.272 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.136 4.136 23 C -0.137 4.137 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.144 0.856 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.200 3.282 -8.443 15.195 hybrid contribution 0.955 0.065 -0.099 0.963 sum -11.244 3.347 -8.543 14.512 Atomic orbital electron populations 1.20735 0.91715 1.02383 1.01825 1.19823 0.95663 0.93374 1.01572 1.20933 0.94143 0.97169 1.01712 1.20969 0.93782 0.97870 1.00471 1.19983 0.95529 0.92891 0.97198 1.20010 0.89266 0.98374 0.96716 1.21942 1.02173 0.98940 0.96123 1.21763 1.02591 0.97208 0.96148 1.21154 0.83188 0.93603 1.00733 1.47949 1.03556 1.80092 1.06683 1.21491 0.97331 0.99535 0.86046 1.18166 0.88213 0.76275 0.80968 1.90606 1.70162 1.54620 1.29883 1.21057 0.89905 1.54030 0.93154 0.91098 1.25711 0.99618 0.92677 0.95147 1.70031 1.36192 1.35491 0.97797 0.86391 0.83592 0.78179 0.79046 1.18814 1.20229 1.20248 1.21219 0.93917 0.98303 1.00134 1.20982 0.94216 0.97215 1.01312 0.91651 0.91847 0.91920 0.86652 0.86361 0.93519 0.91149 0.93476 0.92103 0.90995 0.94838 0.90788 0.93019 0.94874 0.91205 0.94253 0.92274 0.85614 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.10 -1.30 5.88 -104.62 -0.62 -1.92 16 3 C -0.12 -1.56 9.70 -39.58 -0.38 -1.95 16 4 C -0.11 -1.63 8.71 -39.58 -0.34 -1.98 16 5 C -0.06 -0.88 4.76 -104.63 -0.50 -1.38 16 6 C -0.04 -0.74 0.67 -155.66 -0.10 -0.84 16 7 C -0.13 -2.10 7.69 37.16 0.29 -1.82 16 8 C -0.12 -2.45 6.95 37.16 0.26 -2.20 16 9 C 0.14 2.67 3.28 -4.04 -0.01 2.65 16 10 N -0.64 -14.19 2.40 -183.25 -0.44 -14.63 16 11 C 0.10 1.82 9.18 59.84 0.55 2.37 16 12 C 0.56 15.28 6.02 -12.99 -0.08 15.20 16 13 O -0.57 -17.56 12.79 5.20 0.07 -17.50 16 14 C -0.54 -14.98 8.74 -35.63 -0.31 -15.29 16 15 H 0.07 1.80 6.00 -52.48 -0.31 1.48 16 16 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 17 N -0.77 -22.59 11.83 55.55 0.66 -21.93 16 18 Si 0.90 19.95 29.56 -169.99 -5.02 14.92 16 19 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 22 C -0.12 -1.77 8.98 -39.58 -0.36 -2.13 16 23 C -0.12 -1.58 9.70 -39.58 -0.38 -1.96 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 26 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.12 1.60 7.10 -52.49 -0.37 1.22 16 29 H 0.05 0.66 7.39 -51.93 -0.38 0.28 16 30 H 0.07 1.18 5.33 -51.93 -0.28 0.90 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.39 7.73 -51.93 -0.40 0.99 16 33 H 0.07 1.72 6.15 -51.93 -0.32 1.40 16 34 H 0.03 0.59 7.39 -51.93 -0.38 0.21 16 35 H 0.07 1.61 6.78 -51.93 -0.35 1.26 16 36 H 0.05 0.87 7.27 -51.93 -0.38 0.49 16 37 H 0.03 0.57 6.26 -51.93 -0.33 0.24 16 38 H 0.07 1.32 6.09 -51.93 -0.32 1.01 16 39 H 0.04 0.60 7.89 -51.93 -0.41 0.19 16 40 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 41 H 0.13 1.85 5.90 -52.49 -0.31 1.54 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 327.82 15.07 4.94 4.94 Total: -1.00 -32.20 327.82 -7.74 -39.94 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -6.21 Total: 3.82 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: -1.73 Total: -9.56 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.22 Total: -36.56 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: 0.07 Total: -17.50 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.20 -7.74 -39.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274694303.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.671 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds