Wall clock time and date at job start Mon Mar 30 2020 01:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00307 * 2 1 4 4 H 1.48495 * 109.47516 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46822 * 300.00012 * 3 2 1 6 6 H 1.48505 * 109.47302 * 59.99751 * 3 2 1 7 7 C 1.37880 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47142 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46868 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99780 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47167 * 179.97438 * 12 11 10 14 14 C 1.38274 * 119.94301 * 90.00503 * 13 12 11 15 15 C 1.38141 * 120.05552 * 180.27916 * 14 13 12 16 16 C 1.38738 * 119.94395 * 359.44290 * 15 14 13 17 17 O 1.35897 * 120.05494 * 180.25974 * 16 15 14 18 18 C 1.42901 * 117.00045 * 0.27113 * 17 16 15 19 19 C 1.53001 * 109.47019 * 180.02562 * 18 17 16 20 20 C 1.52994 * 117.50138 * 243.74864 * 19 18 17 21 21 C 1.53003 * 117.49945 * 175.08623 * 19 18 17 22 22 C 1.38729 * 119.88657 * 0.52992 * 16 15 14 23 23 C 1.38149 * 119.94477 * 359.75178 * 22 16 15 24 24 H 0.97000 * 119.99948 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47198 * 59.99861 * 9 7 2 26 26 H 1.09003 * 109.47400 * 299.99868 * 9 7 2 27 27 H 1.08994 * 109.47383 * 60.00169 * 10 9 7 28 28 H 1.09000 * 109.46626 * 299.99563 * 10 9 7 29 29 H 1.00897 * 111.00302 * 56.04801 * 11 10 9 30 30 H 1.08996 * 109.46916 * 60.00166 * 12 11 10 31 31 H 1.09002 * 109.47120 * 299.99992 * 12 11 10 32 32 H 1.08002 * 119.96836 * 359.97438 * 14 13 12 33 33 H 1.07998 * 120.02987 * 179.70379 * 15 14 13 34 34 H 1.08999 * 109.46998 * 299.99941 * 18 17 16 35 35 H 1.08996 * 109.46963 * 60.00612 * 18 17 16 36 36 H 1.09009 * 115.54772 * 29.42060 * 19 18 17 37 37 H 1.08999 * 117.50142 * 0.02562 * 20 19 18 38 38 H 1.09005 * 117.50029 * 145.02443 * 20 19 18 39 39 H 1.09002 * 117.49850 * 214.98006 * 21 19 18 40 40 H 1.09001 * 117.49774 * 0.02562 * 21 19 18 41 41 H 1.07998 * 120.02610 * 179.76708 * 22 16 15 42 42 H 1.07996 * 119.96812 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 2.4352 -6.0759 -0.0007 13 6 1.6472 -7.3604 -0.0007 14 6 1.2859 -7.9485 -1.1989 15 6 0.5586 -9.1229 -1.2016 16 6 0.2005 -9.7185 -0.0008 17 8 -0.5105 -10.8766 -0.0009 18 6 -0.8506 -11.4290 -1.2741 19 6 -1.6446 -12.7214 -1.0737 20 6 -1.0156 -14.0222 -1.5768 21 6 -2.2035 -13.4079 -2.3216 22 6 0.5647 -9.1268 1.2000 23 6 1.2871 -7.9492 1.1973 24 1 -0.4850 0.8401 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8746 -4.9841 -0.7817 30 1 3.0632 -6.0354 0.8893 31 1 3.0632 -6.0345 -0.8907 32 1 1.5684 -7.4866 -2.1334 33 1 0.2725 -9.5793 -2.1376 34 1 -1.4561 -10.7136 -1.8305 35 1 0.0608 -11.6449 -1.8316 36 1 -2.2411 -12.7702 -0.1626 37 1 -0.0359 -13.9574 -2.0502 38 1 -1.1986 -14.9270 -0.9970 39 1 -3.1674 -13.9088 -2.2314 40 1 -2.0052 -12.9391 -3.2854 41 1 0.2839 -9.5865 2.1360 42 1 1.5704 -7.4880 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276594586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:57 Heat of formation + Delta-G solvation = -1.741595 kcal Electronic energy + Delta-G solvation = -19577.613414 eV Core-core repulsion = 16523.064124 eV Total energy + Delta-G solvation = -3054.549290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29249 -38.39410 -37.10742 -35.57086 -33.01488 -31.19093 -30.93601 -28.85980 -27.69990 -25.05392 -23.26167 -22.94115 -22.84593 -21.11625 -20.83310 -20.45139 -18.34448 -16.73137 -16.30580 -16.07739 -15.58673 -15.43812 -14.83598 -14.54129 -14.44044 -14.16493 -13.98769 -13.44636 -13.18124 -12.85063 -12.69939 -12.23200 -12.07888 -12.00481 -11.71843 -11.36015 -11.20857 -11.03248 -10.95801 -10.90962 -10.77880 -10.50861 -10.36744 -9.98577 -9.39303 -9.13196 -8.98912 -8.34613 -8.15207 -7.76384 -5.98555 -4.01157 1.35755 1.41229 2.84661 3.31937 3.36524 3.39194 3.43284 3.74401 4.27668 4.39498 4.45745 4.53321 4.71832 4.76457 4.86870 4.90162 4.99333 5.13174 5.14949 5.17073 5.34970 5.37323 5.40729 5.41330 5.57510 5.62770 5.74240 5.75308 5.89436 6.06051 6.25281 6.30539 6.37650 6.40670 6.72865 6.76602 6.99127 7.32294 7.49076 7.74592 7.83930 7.97055 8.10191 8.44826 9.06474 9.62544 11.12879 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042075 B = 0.002270 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.323059 B =12333.602223 C =12589.193091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.687 5.687 12 C 0.099 3.901 13 C -0.108 4.108 14 C -0.076 4.076 15 C -0.209 4.209 16 C 0.122 3.878 17 O -0.315 6.315 18 C 0.092 3.908 19 C -0.157 4.157 20 C -0.177 4.177 21 C -0.170 4.170 22 C -0.152 4.152 23 C -0.058 4.058 24 H 0.260 0.740 25 H 0.013 0.987 26 H 0.026 0.974 27 H 0.059 0.941 28 H 0.015 0.985 29 H 0.337 0.663 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.128 0.872 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.880 -26.986 -3.545 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.317 5.317 12 C -0.030 4.030 13 C -0.109 4.109 14 C -0.094 4.094 15 C -0.228 4.228 16 C 0.077 3.923 17 O -0.229 6.229 18 C 0.016 3.984 19 C -0.175 4.175 20 C -0.214 4.214 21 C -0.207 4.207 22 C -0.171 4.171 23 C -0.077 4.077 24 H 0.070 0.930 25 H 0.032 0.968 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.154 0.846 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.146 0.854 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.168 -26.978 -2.701 27.138 hybrid contribution 0.704 1.034 -1.209 1.740 sum -0.465 -25.944 -3.911 26.241 Atomic orbital electron populations 1.69987 1.06030 1.26468 1.50734 1.25018 0.94856 0.99254 0.95348 0.86525 0.80058 0.83766 0.77565 1.19774 1.21055 1.20977 1.21219 0.93026 0.90999 1.50725 0.92680 1.19078 0.94039 0.90412 0.97762 1.22187 0.97013 0.88407 0.98682 1.60658 1.19540 1.01653 1.49888 1.20836 0.93529 0.87875 1.00794 1.19846 1.01141 0.97038 0.92890 1.20861 0.96332 0.94344 0.97884 1.21136 1.05611 0.99338 0.96722 1.18954 0.92975 0.86022 0.94313 1.86021 1.69155 1.36425 1.31289 1.22261 0.98200 0.93586 0.84317 1.22117 1.03348 0.92091 0.99925 1.23117 0.97770 0.96761 1.03723 1.23010 0.98626 1.03408 0.95699 1.20416 1.03215 0.97390 0.96073 1.20888 0.95285 0.93251 0.98240 0.93049 0.96830 0.95595 0.92257 0.96655 0.84605 0.90590 0.95110 0.86019 0.85890 0.91539 0.91970 0.86528 0.88531 0.88399 0.88117 0.88457 0.85365 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.39 5.62 -3.82 -0.02 1.37 16 11 N -0.69 -12.57 6.49 -115.06 -0.75 -13.31 16 12 C 0.10 1.47 5.81 -4.98 -0.03 1.44 16 13 C -0.11 -1.48 5.39 -104.60 -0.56 -2.05 16 14 C -0.08 -0.94 9.69 -39.60 -0.38 -1.33 16 15 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 16 C 0.12 1.52 6.69 -39.22 -0.26 1.26 16 17 O -0.31 -3.67 10.14 -19.42 -0.20 -3.87 16 18 C 0.09 0.79 5.02 37.16 0.19 0.98 16 19 C -0.16 -1.15 6.05 -90.62 -0.55 -1.70 16 20 C -0.18 -1.06 10.18 -26.70 -0.27 -1.33 16 21 C -0.17 -0.96 10.26 -26.69 -0.27 -1.23 16 22 C -0.15 -1.90 9.99 -39.43 -0.39 -2.30 16 23 C -0.06 -0.76 9.69 -39.61 -0.38 -1.14 16 24 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.34 6.06 8.72 -39.29 -0.34 5.71 16 30 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.03 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.16 6.30 -52.49 -0.33 0.83 16 34 H 0.07 0.54 7.65 -51.93 -0.40 0.14 16 35 H 0.06 0.48 7.41 -51.93 -0.38 0.10 16 36 H 0.12 0.89 8.14 -51.92 -0.42 0.47 16 37 H 0.10 0.55 8.03 -51.93 -0.42 0.13 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -31.39 353.65 -10.66 -42.05 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.90 Total: 1.52 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.86 Total: -22.06 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: -0.01 Total: -39.79 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.39 -10.66 -42.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276594586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.311 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds