Wall clock time and date at job start Mon Mar 30 2020 01:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00307 * 2 1 4 4 H 1.48495 * 109.47516 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46822 * 300.00012 * 3 2 1 6 6 H 1.48505 * 109.47302 * 59.99751 * 3 2 1 7 7 C 1.37880 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00507 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99701 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47142 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46868 * 180.02562 * 10 9 7 12 12 C 1.46904 * 110.99780 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47167 * 179.97438 * 12 11 10 14 14 C 1.38274 * 119.94301 * 90.00503 * 13 12 11 15 15 C 1.38141 * 120.05552 * 180.27916 * 14 13 12 16 16 C 1.38738 * 119.94395 * 359.44290 * 15 14 13 17 17 O 1.35897 * 120.05494 * 180.25974 * 16 15 14 18 18 C 1.42901 * 117.00045 * 0.27113 * 17 16 15 19 19 C 1.53001 * 109.47019 * 180.02562 * 18 17 16 20 20 C 1.52994 * 117.50138 * 243.74864 * 19 18 17 21 21 C 1.53003 * 117.49945 * 175.08623 * 19 18 17 22 22 C 1.38729 * 119.88657 * 0.52992 * 16 15 14 23 23 C 1.38149 * 119.94477 * 359.75178 * 22 16 15 24 24 H 0.97000 * 119.99948 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47198 * 59.99861 * 9 7 2 26 26 H 1.09003 * 109.47400 * 299.99868 * 9 7 2 27 27 H 1.08994 * 109.47383 * 60.00169 * 10 9 7 28 28 H 1.09000 * 109.46626 * 299.99563 * 10 9 7 29 29 H 1.00897 * 111.00302 * 56.04801 * 11 10 9 30 30 H 1.08996 * 109.46916 * 60.00166 * 12 11 10 31 31 H 1.09002 * 109.47120 * 299.99992 * 12 11 10 32 32 H 1.08002 * 119.96836 * 359.97438 * 14 13 12 33 33 H 1.07998 * 120.02987 * 179.70379 * 15 14 13 34 34 H 1.08999 * 109.46998 * 299.99941 * 18 17 16 35 35 H 1.08996 * 109.46963 * 60.00612 * 18 17 16 36 36 H 1.09009 * 115.54772 * 29.42060 * 19 18 17 37 37 H 1.08999 * 117.50142 * 0.02562 * 20 19 18 38 38 H 1.09005 * 117.50029 * 145.02443 * 20 19 18 39 39 H 1.09002 * 117.49850 * 214.98006 * 21 19 18 40 40 H 1.09001 * 117.49774 * 0.02562 * 21 19 18 41 41 H 1.07998 * 120.02610 * 179.76708 * 22 16 15 42 42 H 1.07996 * 119.96812 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5108 -4.9342 -0.0001 12 6 2.4352 -6.0759 -0.0007 13 6 1.6472 -7.3604 -0.0007 14 6 1.2859 -7.9485 -1.1989 15 6 0.5586 -9.1229 -1.2016 16 6 0.2005 -9.7185 -0.0008 17 8 -0.5105 -10.8766 -0.0009 18 6 -0.8506 -11.4290 -1.2741 19 6 -1.6446 -12.7214 -1.0737 20 6 -1.0156 -14.0222 -1.5768 21 6 -2.2035 -13.4079 -2.3216 22 6 0.5647 -9.1268 1.2000 23 6 1.2871 -7.9492 1.1973 24 1 -0.4850 0.8401 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6044 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8746 -4.9841 -0.7817 30 1 3.0632 -6.0354 0.8893 31 1 3.0632 -6.0345 -0.8907 32 1 1.5684 -7.4866 -2.1334 33 1 0.2725 -9.5793 -2.1376 34 1 -1.4561 -10.7136 -1.8305 35 1 0.0608 -11.6449 -1.8316 36 1 -2.2411 -12.7702 -0.1626 37 1 -0.0359 -13.9574 -2.0502 38 1 -1.1986 -14.9270 -0.9970 39 1 -3.1674 -13.9088 -2.2314 40 1 -2.0052 -12.9391 -3.2854 41 1 0.2839 -9.5865 2.1360 42 1 1.5704 -7.4880 2.1318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276594586.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:56 Heat of formation + Delta-G solvation = -19.492437 kcal Electronic energy + Delta-G solvation = -19578.383148 eV Core-core repulsion = 16523.064124 eV Total energy + Delta-G solvation = -3055.319024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17901 -39.23955 -37.86359 -36.99610 -35.02108 -32.55372 -31.99302 -30.35339 -28.58179 -26.65953 -24.82047 -23.84684 -23.29120 -22.47036 -22.01381 -21.45258 -19.20473 -18.50786 -17.55407 -16.94429 -16.78163 -16.39208 -16.33131 -15.79480 -15.48461 -15.43468 -14.96576 -14.58527 -14.31803 -14.21556 -13.90642 -13.65392 -13.51080 -13.00745 -12.85495 -12.54141 -12.44068 -12.36726 -12.21483 -12.15798 -11.93870 -11.70156 -11.40497 -11.39013 -11.24141 -10.91799 -10.57057 -9.94284 -9.34104 -9.03021 -8.20099 -6.31768 0.40591 0.41888 1.40766 1.41483 1.54858 2.10858 2.40788 2.73895 2.85980 3.13216 3.56028 3.71106 3.85796 3.89543 3.91786 3.97543 4.06373 4.20215 4.24396 4.41541 4.45180 4.52629 4.54592 4.60392 4.67971 4.75072 4.76197 4.82619 4.98669 5.07414 5.10865 5.17344 5.21469 5.29922 5.37091 5.45160 5.67611 5.71769 5.78261 5.82581 6.13743 6.27472 6.45580 6.52332 6.86042 7.37569 8.92255 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042075 B = 0.002270 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.323059 B =12333.602223 C =12589.193091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.002 4.002 3 Si 0.969 3.031 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.030 3.970 10 C 0.083 3.917 11 N -0.694 5.694 12 C 0.104 3.896 13 C -0.125 4.125 14 C -0.079 4.079 15 C -0.210 4.210 16 C 0.117 3.883 17 O -0.327 6.327 18 C 0.087 3.913 19 C -0.175 4.175 20 C -0.176 4.176 21 C -0.160 4.160 22 C -0.163 4.163 23 C -0.066 4.066 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.007 1.007 27 H 0.061 0.939 28 H 0.022 0.978 29 H 0.337 0.663 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.135 0.865 33 H 0.146 0.854 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.139 0.861 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.022 -27.711 -4.383 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.794 3.206 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.007 4.007 10 C -0.045 4.045 11 N -0.325 5.325 12 C -0.024 4.024 13 C -0.125 4.125 14 C -0.097 4.097 15 C -0.228 4.228 16 C 0.072 3.928 17 O -0.242 6.242 18 C 0.012 3.988 19 C -0.193 4.193 20 C -0.212 4.212 21 C -0.197 4.197 22 C -0.182 4.182 23 C -0.084 4.084 24 H 0.072 0.928 25 H 0.009 0.991 26 H 0.012 0.988 27 H 0.079 0.921 28 H 0.040 0.960 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.156 0.844 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.258 -27.731 -3.542 27.957 hybrid contribution 0.350 1.137 -0.957 1.527 sum 0.092 -26.594 -4.499 26.972 Atomic orbital electron populations 1.70123 1.07870 1.27740 1.51527 1.26018 0.95803 1.03512 0.94679 0.85339 0.79047 0.78502 0.77763 1.18454 1.20329 1.20409 1.21654 0.93610 0.92177 1.50720 0.91963 1.18935 0.94358 0.92405 0.95003 1.21804 0.95580 0.88129 0.99011 1.60566 1.20209 1.01537 1.50180 1.20827 0.93157 0.86982 1.01479 1.19797 1.02200 0.96854 0.93677 1.21059 0.96088 0.94563 0.98036 1.21373 1.04958 0.98987 0.97491 1.19133 0.92790 0.86328 0.94587 1.86016 1.68895 1.36068 1.33187 1.22474 0.98900 0.94106 0.83312 1.22109 1.04241 0.92238 1.00699 1.23208 0.98221 0.96228 1.03590 1.23115 0.98945 1.02408 0.95203 1.20597 1.03277 0.97413 0.96864 1.21009 0.95443 0.93569 0.98408 0.92757 0.99126 0.98848 0.92090 0.96006 0.84535 0.90210 0.93984 0.84684 0.83661 0.91114 0.90942 0.87358 0.88114 0.87761 0.87181 0.87614 0.84355 0.84595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.69 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 7 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.66 5.23 29.85 0.16 1.81 16 10 C 0.08 3.55 5.62 86.30 0.49 4.03 16 11 N -0.69 -25.25 6.49 -517.93 -3.36 -28.62 16 12 C 0.10 2.98 5.81 85.55 0.50 3.48 16 13 C -0.12 -3.30 5.39 -19.85 -0.11 -3.40 16 14 C -0.08 -1.86 9.69 22.26 0.22 -1.65 16 15 C -0.21 -4.58 9.04 22.37 0.20 -4.38 16 16 C 0.12 2.80 6.69 22.51 0.15 2.95 16 17 O -0.33 -7.35 10.14 -92.39 -0.94 -8.29 16 18 C 0.09 1.38 5.02 71.98 0.36 1.74 16 19 C -0.17 -2.36 6.05 -10.79 -0.07 -2.43 16 20 C -0.18 -1.82 10.18 30.62 0.31 -1.51 16 21 C -0.16 -1.49 10.26 30.62 0.31 -1.18 16 22 C -0.16 -3.99 9.99 22.37 0.22 -3.76 16 23 C -0.07 -1.68 9.69 22.25 0.22 -1.47 16 24 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 26 H -0.01 -0.42 8.14 -2.39 -0.02 -0.43 16 27 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.34 12.15 8.72 -89.70 -0.78 11.36 16 30 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 31 H 0.04 1.12 8.09 -2.39 -0.02 1.10 16 32 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 33 H 0.15 2.43 6.30 -2.91 -0.02 2.41 16 34 H 0.07 1.04 7.65 -2.39 -0.02 1.03 16 35 H 0.07 0.99 7.41 -2.39 -0.02 0.97 16 36 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 38 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 42 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -67.04 353.65 1.88 -65.17 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.21 Total: 19.07 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 3.66 Total: -36.58 kcal Atomic # 7 Polarization: -82.94 SS G_CDS: -3.08 Total: -86.02 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.94 Total: -8.29 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.04 1.88 -65.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276594586.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.674 kcal (2) G-P(sol) polarization free energy of solvation -67.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds