Wall clock time and date at job start Mon Mar 30 2020 01:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00021 * 2 1 4 4 C 1.38216 * 120.00155 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99854 * 359.97438 * 4 3 2 6 6 C 1.38206 * 119.99794 * 359.95771 * 5 4 3 7 7 C 1.50698 * 119.99854 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47457 * 90.00279 * 7 6 5 9 9 O 1.42895 * 109.45764 * 65.02434 * 8 7 6 10 10 C 1.53038 * 109.46304 * 185.00147 * 8 7 6 11 11 C 1.53184 * 109.31212 * 181.38372 * 10 8 7 12 12 N 1.46924 * 108.77811 * 305.36202 * 11 10 8 13 13 C 1.36935 * 120.63405 * 233.58661 * 12 11 10 14 14 H 1.08008 * 120.00104 * 152.32397 * 13 12 11 15 15 C 1.38804 * 120.00129 * 332.05170 * 13 12 11 16 16 N 1.31620 * 120.00038 * 343.04108 * 15 13 12 17 17 Si 1.86801 * 120.00150 * 163.03852 * 15 13 12 18 18 H 1.48491 * 109.47171 * 60.00079 * 17 15 13 19 19 H 1.48503 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 299.99706 * 17 15 13 21 21 C 1.46933 * 118.73836 * 53.86167 * 12 11 10 22 22 C 1.53043 * 109.45625 * 305.06685 * 8 7 6 23 23 C 1.38215 * 119.99939 * 180.22166 * 2 1 3 24 24 H 1.08995 * 109.47376 * 89.99659 * 1 2 3 25 25 H 1.09004 * 109.47039 * 209.99941 * 1 2 3 26 26 H 1.09002 * 109.46550 * 329.99399 * 1 2 3 27 27 H 1.08005 * 120.00324 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.00268 * 179.97438 * 4 3 2 29 29 H 1.07993 * 119.99651 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47469 * 330.00015 * 7 6 5 31 31 H 1.09004 * 109.47563 * 210.00033 * 7 6 5 32 32 H 0.96700 * 114.00473 * 299.97273 * 9 8 7 33 33 H 1.09000 * 109.49650 * 61.42707 * 10 8 7 34 34 H 1.09002 * 109.49456 * 301.33688 * 10 8 7 35 35 H 1.09008 * 109.58707 * 185.57914 * 11 10 8 36 36 H 1.08999 * 109.70908 * 65.21995 * 11 10 8 37 37 H 0.96999 * 120.00551 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.58493 * 65.92431 * 21 12 11 39 39 H 1.09001 * 109.58928 * 186.35394 * 21 12 11 40 40 H 1.09003 * 109.49961 * 298.56774 * 22 8 7 41 41 H 1.09004 * 109.49407 * 58.66396 * 22 8 7 42 42 H 1.07999 * 120.00136 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2718 -0.0001 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0015 8 6 4.5901 -2.9427 1.4442 9 8 3.3439 -3.2258 2.0836 10 6 5.4616 -4.2006 1.4462 11 6 5.6869 -4.6585 2.8905 12 7 6.2434 -3.5378 3.6606 13 6 7.4034 -3.6882 4.3725 14 1 8.0392 -2.8345 4.5555 15 6 7.7594 -4.9367 4.8637 16 7 6.8585 -5.8926 4.9466 17 14 9.5171 -5.2602 5.4070 18 1 9.8754 -4.3271 6.5052 19 1 9.6371 -6.6602 5.8874 20 1 10.4364 -5.0507 4.2597 21 6 5.5281 -2.2543 3.6574 22 6 5.3075 -1.8218 2.1999 23 6 2.1981 -1.1970 -0.0046 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 1.6583 2.1327 0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.3517 0.0000 -0.0014 30 1 5.2863 -2.3722 -0.5131 31 1 3.7448 -3.2622 -0.5114 32 1 2.7395 -2.4717 2.1187 33 1 6.4219 -3.9786 0.9808 34 1 4.9604 -4.9913 0.8878 35 1 6.3867 -5.4942 2.9040 36 1 4.7389 -4.9687 3.3299 37 1 7.1071 -6.7650 5.2902 38 1 4.5662 -2.3708 4.1564 39 1 6.1231 -1.5031 4.1769 40 1 6.2694 -1.6221 1.7274 41 1 4.6966 -0.9193 2.1780 42 1 1.6581 -2.1323 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280539700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:50 Heat of formation + Delta-G solvation = -18.276005 kcal Electronic energy + Delta-G solvation = -21899.851859 eV Core-core repulsion = 18844.585583 eV Total energy + Delta-G solvation = -3055.266276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.97273 -38.21271 -35.14166 -33.42732 -32.16201 -31.79643 -30.32074 -29.41329 -27.17229 -26.77050 -24.21047 -22.56270 -21.83575 -21.40766 -20.08318 -19.11488 -16.79911 -16.45080 -15.80944 -15.46183 -15.01390 -14.77723 -14.37190 -13.86635 -13.76245 -13.39700 -13.19778 -13.07934 -12.99367 -12.70434 -12.42514 -12.20800 -11.90161 -11.47777 -11.31853 -11.12030 -11.07659 -10.95135 -10.86907 -10.65210 -10.42033 -10.21616 -9.90175 -9.78863 -9.36253 -9.22626 -8.76269 -8.46369 -8.36333 -6.55374 -5.69990 -3.12142 1.33694 1.36796 3.42432 3.47990 3.49191 3.72274 4.55760 4.68046 4.74560 4.80116 4.89377 5.11082 5.23078 5.32365 5.38893 5.44359 5.47328 5.48276 5.57619 5.64946 5.66918 5.69846 5.86586 5.98189 6.10112 6.13358 6.21617 6.40829 6.44143 6.46285 6.54608 6.64054 6.68844 6.71563 6.80503 6.87874 7.01524 7.12974 7.50808 7.83203 7.86919 8.18267 8.54025 9.30747 9.94813 10.53295 11.38043 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036307 B = 0.004243 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.016782 B = 6597.078335 C = 6847.542695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.116 4.116 5 C -0.118 4.118 6 C -0.069 4.069 7 C -0.112 4.112 8 C 0.150 3.850 9 O -0.548 6.548 10 C -0.127 4.127 11 C 0.177 3.823 12 N -0.591 5.591 13 C -0.253 4.253 14 H 0.063 0.937 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.901 3.099 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.151 3.849 22 C -0.158 4.158 23 C -0.123 4.123 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.360 0.640 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.027 0.973 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.841 11.657 -12.209 19.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.136 4.136 6 C -0.069 4.069 7 C -0.150 4.150 8 C 0.109 3.891 9 O -0.352 6.352 10 C -0.166 4.166 11 C 0.052 3.948 12 N -0.314 5.314 13 C -0.383 4.383 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.731 3.269 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.024 3.976 22 C -0.197 4.197 23 C -0.141 4.141 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.206 0.794 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.102 0.898 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.039 0.961 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.531 10.879 -12.059 18.831 hybrid contribution 0.700 0.460 0.174 0.855 sum -8.831 11.339 -11.885 18.650 Atomic orbital electron populations 1.20787 0.91392 1.02793 1.02099 1.19892 0.95918 0.93175 0.99639 1.20971 0.94274 0.97324 1.02261 1.21111 0.94271 0.97928 1.00049 1.21094 0.99998 0.91934 1.00527 1.19930 0.93654 0.95246 0.98079 1.21492 1.00238 0.93778 0.99502 1.21061 0.84206 0.95931 0.87872 1.86628 1.27557 1.39831 1.81229 1.22193 0.97091 0.94869 1.02419 1.20669 0.97881 0.91002 0.85280 1.44051 1.25466 1.07497 1.54388 1.19157 0.96496 0.94795 1.27805 0.91886 1.25039 0.97752 0.97932 0.98963 1.70040 1.31613 1.03965 1.49003 0.86395 0.85082 0.76980 0.78454 1.20968 1.21668 1.21112 1.20871 0.95378 0.89248 0.92083 1.22805 1.00014 0.96929 0.99985 1.21007 0.93601 0.97643 1.01878 0.91420 0.91406 0.91704 0.86512 0.86287 0.86083 0.90366 0.90597 0.79362 0.91666 0.92772 0.89820 0.95531 0.93668 0.96067 0.93318 0.91837 0.92674 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.09 -0.92 5.88 -104.62 -0.62 -1.54 16 3 C -0.13 -1.36 9.70 -39.58 -0.38 -1.75 16 4 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 5 C -0.12 -1.43 7.81 -39.58 -0.31 -1.74 16 6 C -0.07 -0.88 4.02 -104.63 -0.42 -1.30 16 7 C -0.11 -1.56 4.67 -27.88 -0.13 -1.69 16 8 C 0.15 2.58 0.73 -90.58 -0.07 2.51 16 9 O -0.55 -9.90 11.67 -35.23 -0.41 -10.31 16 10 C -0.13 -2.52 5.11 -26.62 -0.14 -2.65 16 11 C 0.18 4.45 5.06 -3.72 -0.02 4.43 16 12 N -0.59 -15.40 2.99 -172.05 -0.51 -15.91 16 13 C -0.25 -7.14 9.58 -15.06 -0.14 -7.29 16 14 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 16 N -0.90 -26.93 11.18 55.49 0.62 -26.31 16 17 Si 0.90 22.07 29.59 -169.99 -5.03 17.04 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.15 3.34 6.30 -3.48 -0.02 3.32 16 22 C -0.16 -2.81 4.38 -26.38 -0.12 -2.93 16 23 C -0.12 -1.45 8.08 -39.58 -0.32 -1.77 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 27 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.12 1.41 8.03 -52.49 -0.42 0.99 16 30 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 31 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 32 H 0.36 5.48 7.27 45.56 0.33 5.82 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 2.32 6.04 -51.92 -0.31 2.01 16 36 H 0.03 0.73 7.82 -51.93 -0.41 0.32 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.02 0.49 7.81 -51.93 -0.41 0.09 16 39 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.05 0.88 6.04 -51.93 -0.31 0.57 16 42 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -31.11 329.30 -9.31 -40.42 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.13 Total: 4.77 kcal Atomic # 6 Polarization: -11.85 SS G_CDS: -2.81 Total: -14.66 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.11 Total: -42.22 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.41 Total: -10.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.11 -9.31 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280539700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.141 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds