Wall clock time and date at job start Mon Mar 30 2020 01:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38251 * 120.00021 * 2 1 4 4 C 1.38216 * 120.00155 * 180.02562 * 3 2 1 5 5 C 1.38263 * 119.99854 * 359.97438 * 4 3 2 6 6 C 1.38206 * 119.99794 * 359.95771 * 5 4 3 7 7 C 1.50698 * 119.99854 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.47457 * 90.00279 * 7 6 5 9 9 O 1.42895 * 109.45764 * 65.02434 * 8 7 6 10 10 C 1.53038 * 109.46304 * 185.00147 * 8 7 6 11 11 C 1.53184 * 109.31212 * 181.38372 * 10 8 7 12 12 N 1.46924 * 108.77811 * 305.36202 * 11 10 8 13 13 C 1.36935 * 120.63405 * 233.58661 * 12 11 10 14 14 H 1.08008 * 120.00104 * 152.32397 * 13 12 11 15 15 C 1.38804 * 120.00129 * 332.05170 * 13 12 11 16 16 N 1.31620 * 120.00038 * 343.04108 * 15 13 12 17 17 Si 1.86801 * 120.00150 * 163.03852 * 15 13 12 18 18 H 1.48491 * 109.47171 * 60.00079 * 17 15 13 19 19 H 1.48503 * 109.47142 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47267 * 299.99706 * 17 15 13 21 21 C 1.46933 * 118.73836 * 53.86167 * 12 11 10 22 22 C 1.53043 * 109.45625 * 305.06685 * 8 7 6 23 23 C 1.38215 * 119.99939 * 180.22166 * 2 1 3 24 24 H 1.08995 * 109.47376 * 89.99659 * 1 2 3 25 25 H 1.09004 * 109.47039 * 209.99941 * 1 2 3 26 26 H 1.09002 * 109.46550 * 329.99399 * 1 2 3 27 27 H 1.08005 * 120.00324 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.00268 * 179.97438 * 4 3 2 29 29 H 1.07993 * 119.99651 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47469 * 330.00015 * 7 6 5 31 31 H 1.09004 * 109.47563 * 210.00033 * 7 6 5 32 32 H 0.96700 * 114.00473 * 299.97273 * 9 8 7 33 33 H 1.09000 * 109.49650 * 61.42707 * 10 8 7 34 34 H 1.09002 * 109.49456 * 301.33688 * 10 8 7 35 35 H 1.09008 * 109.58707 * 185.57914 * 11 10 8 36 36 H 1.08999 * 109.70908 * 65.21995 * 11 10 8 37 37 H 0.96999 * 120.00551 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.58493 * 65.92431 * 21 12 11 39 39 H 1.09001 * 109.58928 * 186.35394 * 21 12 11 40 40 H 1.09003 * 109.49961 * 298.56774 * 22 8 7 41 41 H 1.09004 * 109.49407 * 58.66396 * 22 8 7 42 42 H 1.07999 * 120.00136 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2718 -0.0001 -0.0005 6 6 3.5807 -1.1969 0.0009 7 6 4.3342 -2.5020 0.0015 8 6 4.5901 -2.9427 1.4442 9 8 3.3439 -3.2258 2.0836 10 6 5.4616 -4.2006 1.4462 11 6 5.6869 -4.6585 2.8905 12 7 6.2434 -3.5378 3.6606 13 6 7.4034 -3.6882 4.3725 14 1 8.0392 -2.8345 4.5555 15 6 7.7594 -4.9367 4.8637 16 7 6.8585 -5.8926 4.9466 17 14 9.5171 -5.2602 5.4070 18 1 9.8754 -4.3271 6.5052 19 1 9.6371 -6.6602 5.8874 20 1 10.4364 -5.0507 4.2597 21 6 5.5281 -2.2543 3.6574 22 6 5.3075 -1.8218 2.1999 23 6 2.1981 -1.1970 -0.0046 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3632 0.8900 0.5140 27 1 1.6583 2.1327 0.0004 28 1 4.1205 2.1326 -0.0010 29 1 5.3517 0.0000 -0.0014 30 1 5.2863 -2.3722 -0.5131 31 1 3.7448 -3.2622 -0.5114 32 1 2.7395 -2.4717 2.1187 33 1 6.4219 -3.9786 0.9808 34 1 4.9604 -4.9913 0.8878 35 1 6.3867 -5.4942 2.9040 36 1 4.7389 -4.9687 3.3299 37 1 7.1071 -6.7650 5.2902 38 1 4.5662 -2.3708 4.1564 39 1 6.1231 -1.5031 4.1769 40 1 6.2694 -1.6221 1.7274 41 1 4.6966 -0.9193 2.1780 42 1 1.6581 -2.1323 -0.0087 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280539700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:49 Heat of formation + Delta-G solvation = -36.523917 kcal Electronic energy + Delta-G solvation = -21900.643148 eV Core-core repulsion = 18844.585583 eV Total energy + Delta-G solvation = -3056.057564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07442 -39.48578 -36.91537 -34.48369 -33.86395 -32.87058 -31.94932 -31.08010 -28.50522 -27.63230 -26.01459 -24.05664 -23.17917 -22.69793 -21.14198 -20.76903 -18.78419 -17.34308 -17.17293 -16.88431 -16.36107 -16.00255 -15.91017 -15.35791 -14.99109 -14.90885 -14.76540 -14.42621 -14.00041 -13.86253 -13.55526 -13.26552 -13.09557 -13.03811 -12.86794 -12.64010 -12.53431 -12.48665 -12.23055 -12.11535 -11.92658 -11.79545 -11.70267 -11.60824 -10.99755 -10.72490 -10.50592 -9.63383 -9.36101 -8.65607 -7.85500 -5.31971 0.48182 0.53123 1.46437 1.49268 1.56347 2.52005 2.87019 3.26494 3.40579 3.70417 3.75126 3.95222 4.05120 4.09181 4.11741 4.23830 4.35899 4.49561 4.51967 4.56165 4.71396 4.74366 4.84852 4.87136 4.90193 4.90553 4.96759 5.02619 5.09018 5.19423 5.22896 5.28501 5.35813 5.39283 5.48401 5.63369 5.64457 5.74652 5.77944 5.82809 6.19169 6.39578 6.90611 7.15790 7.87774 8.41540 9.20454 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.036307 B = 0.004243 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.016782 B = 6597.078335 C = 6847.542695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.099 4.099 8 C 0.154 3.846 9 O -0.566 6.566 10 C -0.120 4.120 11 C 0.187 3.813 12 N -0.608 5.608 13 C -0.268 4.268 14 H 0.067 0.933 15 C -0.052 4.052 16 N -0.937 5.937 17 Si 0.970 3.030 18 H -0.275 1.275 19 H -0.294 1.294 20 H -0.276 1.276 21 C 0.146 3.854 22 C -0.141 4.141 23 C -0.132 4.132 24 H 0.077 0.923 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.139 0.861 28 H 0.138 0.862 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.373 0.627 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.050 0.950 36 H -0.009 1.009 37 H 0.249 0.751 38 H 0.007 0.993 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.054 13.686 -13.547 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.138 4.138 5 C -0.149 4.149 6 C -0.082 4.082 7 C -0.136 4.136 8 C 0.114 3.886 9 O -0.373 6.373 10 C -0.159 4.159 11 C 0.061 3.939 12 N -0.332 5.332 13 C -0.398 4.398 14 H 0.085 0.915 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.798 3.202 18 H -0.201 1.201 19 H -0.220 1.220 20 H -0.202 1.202 21 C 0.020 3.980 22 C -0.180 4.180 23 C -0.150 4.150 24 H 0.096 0.904 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.157 0.843 28 H 0.156 0.844 29 H 0.142 0.858 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.221 0.779 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.009 0.991 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.067 0.933 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.758 12.947 -13.414 21.042 hybrid contribution 0.674 -0.111 0.622 0.924 sum -9.084 12.836 -12.792 20.271 Atomic orbital electron populations 1.20831 0.89744 1.03467 1.02961 1.20206 0.97265 0.92913 0.98792 1.21308 0.94371 0.98200 1.01211 1.21390 0.94723 0.98327 0.99348 1.21224 1.00323 0.92241 1.01064 1.19834 0.93998 0.94709 0.99692 1.21266 1.01064 0.94738 0.96570 1.20939 0.83476 0.94082 0.90143 1.86597 1.28035 1.40965 1.81668 1.22039 0.98424 0.96812 0.98586 1.20391 0.94930 0.90281 0.88256 1.44313 1.25500 1.08767 1.54583 1.19537 0.97466 0.95115 1.27662 0.91534 1.25857 1.01662 0.97710 0.99494 1.70219 1.33598 1.04155 1.50293 0.85307 0.80165 0.76495 0.78275 1.20077 1.22010 1.20159 1.21017 0.94130 0.87699 0.95150 1.22616 1.00754 0.97952 0.96650 1.21124 0.93431 0.98359 1.02109 0.90389 0.91288 0.90534 0.84344 0.84386 0.85823 0.89568 0.90116 0.77899 0.91030 0.91537 0.93157 0.99108 0.94150 0.97518 0.93296 0.91492 0.90349 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 10.01 71.24 0.71 -0.84 16 2 C -0.09 -1.72 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 4 C -0.12 -2.27 10.05 22.27 0.22 -2.04 16 5 C -0.13 -2.84 7.81 22.27 0.17 -2.67 16 6 C -0.08 -1.91 4.02 -19.87 -0.08 -1.99 16 7 C -0.10 -2.54 4.67 29.85 0.14 -2.40 16 8 C 0.15 5.13 0.73 -10.76 -0.01 5.12 16 9 O -0.57 -20.17 11.67 -148.98 -1.74 -21.91 16 10 C -0.12 -4.75 5.11 30.67 0.16 -4.59 16 11 C 0.19 9.72 5.06 86.36 0.44 10.15 16 12 N -0.61 -32.33 2.99 -698.26 -2.09 -34.41 16 13 C -0.27 -15.34 9.58 84.03 0.81 -14.54 16 14 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 15 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 16 N -0.94 -57.81 11.18 21.65 0.24 -57.56 16 17 Si 0.97 45.95 29.59 68.60 2.03 47.97 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.15 6.47 6.30 86.51 0.55 7.01 16 22 C -0.14 -4.83 4.38 30.82 0.14 -4.69 16 23 C -0.13 -2.84 8.08 22.27 0.18 -2.66 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 26 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 27 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 28 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.12 2.57 8.03 -2.91 -0.02 2.55 16 30 H 0.09 2.08 8.09 -2.39 -0.02 2.06 16 31 H 0.08 2.00 8.08 -2.39 -0.02 1.99 16 32 H 0.37 10.96 7.27 -74.06 -0.54 10.42 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.05 2.91 6.04 -2.38 -0.01 2.90 16 36 H -0.01 -0.53 7.82 -2.39 -0.02 -0.55 16 37 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.01 0.32 7.81 -2.39 -0.02 0.30 16 39 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 41 H 0.08 2.35 6.04 -2.38 -0.01 2.33 16 42 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -68.20 329.30 2.84 -65.36 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.45 Total: 21.27 kcal Atomic # 6 Polarization: -24.65 SS G_CDS: 3.94 Total: -20.72 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -1.84 Total: -91.98 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -1.74 Total: -21.91 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -68.20 2.84 -65.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280539700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.836 kcal (2) G-P(sol) polarization free energy of solvation -68.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds