Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99976 * 2 1 4 4 C 1.38215 * 120.00519 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99477 * 0.13871 * 4 3 2 6 6 C 1.38219 * 120.00372 * 359.95021 * 5 4 3 7 7 C 1.50698 * 119.99860 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.46845 * 144.72347 * 7 6 5 9 9 C 1.53006 * 109.46841 * 264.71931 * 7 6 5 10 10 N 1.46493 * 109.47356 * 24.72047 * 7 6 5 11 11 C 1.34778 * 119.99860 * 181.12825 * 10 7 6 12 12 O 1.21275 * 120.00222 * 359.97438 * 11 10 7 13 13 C 1.50708 * 120.00052 * 180.02562 * 11 10 7 14 14 C 1.52992 * 109.47046 * 179.97438 * 13 11 10 15 15 C 1.50709 * 109.47064 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99499 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00023 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99948 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47211 * 120.00289 * 19 17 15 22 22 H 1.48497 * 109.47256 * 240.00616 * 19 17 15 23 23 C 1.38217 * 120.00496 * 180.08866 * 2 1 3 24 24 H 1.08998 * 109.46989 * 269.90302 * 1 2 3 25 25 H 1.08997 * 109.47300 * 29.90858 * 1 2 3 26 26 H 1.09003 * 109.46519 * 149.90949 * 1 2 3 27 27 H 1.08007 * 119.99842 * 0.07017 * 3 2 1 28 28 H 1.07993 * 120.00463 * 180.11398 * 4 3 2 29 29 H 1.08001 * 120.00032 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47396 * 59.99731 * 8 7 6 31 31 H 1.09008 * 109.47249 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47073 * 299.99765 * 8 7 6 33 33 H 1.08997 * 109.47319 * 60.00388 * 9 7 6 34 34 H 1.09008 * 109.46743 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.47246 * 300.00175 * 9 7 6 36 36 H 0.96994 * 120.00203 * 1.12416 * 10 7 6 37 37 H 1.09003 * 109.46620 * 299.99635 * 13 11 10 38 38 H 1.08998 * 109.47253 * 59.99479 * 13 11 10 39 39 H 1.08995 * 109.47620 * 299.99769 * 14 13 11 40 40 H 1.09006 * 109.47100 * 60.00144 * 14 13 11 41 41 H 0.96999 * 120.00308 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.99598 * 0.28598 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 -0.0018 6 6 3.5807 -1.1969 -0.0037 7 6 4.3343 -2.5019 -0.0057 8 6 3.5695 -3.5337 0.8258 9 6 4.4744 -3.0077 -1.4429 10 7 5.6649 -2.2983 0.5722 11 6 6.5295 -3.3291 0.6528 12 8 6.2058 -4.4252 0.2473 13 6 7.8982 -3.1199 1.2479 14 6 8.6733 -4.4387 1.2205 15 6 10.0422 -4.2293 1.8150 16 1 10.3303 -3.2532 2.1765 17 6 10.9263 -5.2839 1.8982 18 7 10.5753 -6.4726 1.4584 19 14 12.6228 -5.0245 2.6357 20 1 12.7696 -3.6070 3.0533 21 1 12.7891 -5.9080 3.8177 22 1 13.6582 -5.3524 1.6231 23 6 2.1982 -1.1969 -0.0019 24 1 -0.3633 -0.0017 1.0276 25 1 -0.3634 0.8908 -0.5124 26 1 -0.3632 -0.8892 -0.5153 27 1 1.6582 2.1327 0.0011 28 1 4.1204 2.1327 0.0024 29 1 5.3517 0.0002 -0.0018 30 1 2.5794 -3.6852 0.3958 31 1 4.1143 -4.4778 0.8240 32 1 3.4696 -3.1733 1.8497 33 1 5.0192 -2.2727 -2.0353 34 1 5.0191 -3.9519 -1.4443 35 1 3.4843 -3.1592 -1.8729 36 1 5.9238 -1.4218 0.8969 37 1 8.4359 -2.3699 0.6675 38 1 7.7982 -2.7789 2.2783 39 1 8.1355 -5.1883 1.8009 40 1 8.7733 -4.7800 0.1901 41 1 11.1974 -7.2145 1.5167 42 1 1.6582 -2.1322 -0.0080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291540811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = -31.284506 kcal Electronic energy + Delta-G solvation = -20901.862533 eV Core-core repulsion = 17846.032166 eV Total energy + Delta-G solvation = -3055.830367 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.45119 -38.91731 -36.00072 -33.43541 -32.76758 -32.17123 -30.77446 -29.57541 -27.48017 -26.86821 -25.66532 -23.71130 -21.76599 -21.67103 -19.80941 -19.23150 -17.41903 -16.52296 -15.89424 -15.64378 -14.98224 -14.84822 -14.64617 -14.39469 -14.08685 -13.76046 -13.47415 -13.30499 -13.19020 -12.58374 -12.49920 -12.22729 -12.09447 -12.05613 -11.88847 -11.60553 -11.22226 -11.12864 -11.08186 -10.91301 -10.73991 -10.56513 -9.92931 -9.61107 -9.10125 -9.07204 -8.89485 -8.82945 -8.61162 -8.30706 -5.94843 -3.98917 1.14616 1.19927 3.28940 3.33412 3.40176 3.43277 3.48396 3.62810 4.41193 4.48787 4.60556 4.68618 4.92601 5.02172 5.13682 5.22204 5.25035 5.32631 5.40260 5.41288 5.54389 5.55760 5.73137 5.81894 5.88188 5.90249 5.95860 6.03561 6.24329 6.25178 6.27613 6.29346 6.38753 6.47563 6.50650 6.80877 6.89150 6.92977 7.76577 7.88891 7.95707 8.09062 8.40943 8.83932 9.10118 9.64598 11.16130 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037727 B = 0.003242 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.987265 B = 8633.259443 C = 9096.028309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.111 4.111 5 C -0.124 4.124 6 C -0.072 4.072 7 C 0.214 3.786 8 C -0.161 4.161 9 C -0.158 4.158 10 N -0.738 5.738 11 C 0.513 3.487 12 O -0.529 6.529 13 C -0.131 4.131 14 C 0.038 3.962 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.111 4.111 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.414 15.586 -3.360 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.129 4.129 5 C -0.142 4.142 6 C -0.073 4.073 7 C 0.128 3.872 8 C -0.219 4.219 9 C -0.216 4.216 10 N -0.394 5.394 11 C 0.302 3.698 12 O -0.404 6.404 13 C -0.171 4.171 14 C 0.000 4.000 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.129 4.129 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.142 0.858 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.573 14.584 -3.676 24.684 hybrid contribution 1.110 0.649 0.567 1.406 sum -18.463 15.234 -3.109 24.137 Atomic orbital electron populations 1.20791 0.91201 1.02741 1.02350 1.19903 0.96033 0.93074 0.99523 1.21024 0.94292 0.97427 1.01704 1.21108 0.94277 0.97887 0.99661 1.20986 1.00067 0.91959 1.01212 1.19955 0.93904 0.94311 0.99118 1.19020 0.82532 0.91393 0.94251 1.22272 0.99767 1.00672 0.99219 1.22219 1.02199 1.03432 0.93751 1.46493 1.14363 1.13388 1.65123 1.21478 0.87086 0.83612 0.77609 1.90595 1.77882 1.24761 1.47208 1.21879 0.90735 1.04227 1.00281 1.18888 0.93289 0.89511 0.98274 1.21270 0.98972 0.95667 1.40509 0.92612 1.25021 0.98544 0.95235 0.95615 1.70004 1.35707 1.00549 1.46588 0.86546 0.84444 0.78152 0.78884 1.19768 1.21036 1.21031 1.20911 0.93224 0.97839 1.00954 0.91158 0.91605 0.91498 0.86255 0.85947 0.85843 0.92087 0.89665 0.92625 0.92738 0.89355 0.92282 0.76896 0.90375 0.90363 0.95814 0.95814 0.93033 0.85645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.00 0.36 -0.40 16 2 C -0.09 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.13 -1.12 9.70 -39.58 -0.38 -1.50 16 4 C -0.11 -1.03 10.05 -39.58 -0.40 -1.43 16 5 C -0.12 -1.31 9.02 -39.58 -0.36 -1.66 16 6 C -0.07 -0.83 4.81 -104.62 -0.50 -1.33 16 7 C 0.21 2.86 0.89 -132.97 -0.12 2.74 16 8 C -0.16 -2.19 7.86 37.16 0.29 -1.90 16 9 C -0.16 -2.20 8.37 37.16 0.31 -1.89 16 10 N -0.74 -10.73 4.88 -48.68 -0.24 -10.97 16 11 C 0.51 9.75 7.25 -10.98 -0.08 9.67 16 12 O -0.53 -11.88 12.19 5.56 0.07 -11.81 16 13 C -0.13 -2.67 5.64 -27.88 -0.16 -2.83 16 14 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 15 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.11 -1.15 8.80 -39.58 -0.35 -1.50 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.36 8.08 -51.93 -0.42 -0.05 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.01 16 27 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 28 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 29 H 0.12 1.19 6.42 -52.49 -0.34 0.86 16 30 H 0.06 0.68 6.52 -51.93 -0.34 0.34 16 31 H 0.08 1.41 6.25 -51.92 -0.32 1.09 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.49 6.09 -51.92 -0.32 1.17 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 4.79 6.40 -40.82 -0.26 4.53 16 37 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.13 1.16 6.34 -52.49 -0.33 0.83 16 LS Contribution 339.71 15.07 5.12 5.12 Total: -1.00 -33.13 339.71 -8.38 -41.51 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.51 Total: 2.42 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.53 Total: -16.24 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.50 Total: -37.76 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.13 -8.38 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291540811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.224 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds