Wall clock time and date at job start Mon Mar 30 2020 01:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38258 * 119.99976 * 2 1 4 4 C 1.38215 * 120.00519 * 179.97438 * 3 2 1 5 5 C 1.38255 * 119.99477 * 0.13871 * 4 3 2 6 6 C 1.38219 * 120.00372 * 359.95021 * 5 4 3 7 7 C 1.50698 * 119.99860 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.46845 * 144.72347 * 7 6 5 9 9 C 1.53006 * 109.46841 * 264.71931 * 7 6 5 10 10 N 1.46493 * 109.47356 * 24.72047 * 7 6 5 11 11 C 1.34778 * 119.99860 * 181.12825 * 10 7 6 12 12 O 1.21275 * 120.00222 * 359.97438 * 11 10 7 13 13 C 1.50708 * 120.00052 * 180.02562 * 11 10 7 14 14 C 1.52992 * 109.47046 * 179.97438 * 13 11 10 15 15 C 1.50709 * 109.47064 * 179.97438 * 14 13 11 16 16 H 1.07996 * 119.99499 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00023 * 179.97438 * 15 14 13 18 18 N 1.31508 * 120.00223 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99948 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47211 * 120.00289 * 19 17 15 22 22 H 1.48497 * 109.47256 * 240.00616 * 19 17 15 23 23 C 1.38217 * 120.00496 * 180.08866 * 2 1 3 24 24 H 1.08998 * 109.46989 * 269.90302 * 1 2 3 25 25 H 1.08997 * 109.47300 * 29.90858 * 1 2 3 26 26 H 1.09003 * 109.46519 * 149.90949 * 1 2 3 27 27 H 1.08007 * 119.99842 * 0.07017 * 3 2 1 28 28 H 1.07993 * 120.00463 * 180.11398 * 4 3 2 29 29 H 1.08001 * 120.00032 * 179.97438 * 5 4 3 30 30 H 1.09002 * 109.47396 * 59.99731 * 8 7 6 31 31 H 1.09008 * 109.47249 * 179.97438 * 8 7 6 32 32 H 1.09004 * 109.47073 * 299.99765 * 8 7 6 33 33 H 1.08997 * 109.47319 * 60.00388 * 9 7 6 34 34 H 1.09008 * 109.46743 * 180.02562 * 9 7 6 35 35 H 1.09002 * 109.47246 * 300.00175 * 9 7 6 36 36 H 0.96994 * 120.00203 * 1.12416 * 10 7 6 37 37 H 1.09003 * 109.46620 * 299.99635 * 13 11 10 38 38 H 1.08998 * 109.47253 * 59.99479 * 13 11 10 39 39 H 1.08995 * 109.47620 * 299.99769 * 14 13 11 40 40 H 1.09006 * 109.47100 * 60.00144 * 14 13 11 41 41 H 0.96999 * 120.00308 * 179.97438 * 18 17 15 42 42 H 1.07998 * 119.99598 * 0.28598 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 -0.0018 6 6 3.5807 -1.1969 -0.0037 7 6 4.3343 -2.5019 -0.0057 8 6 3.5695 -3.5337 0.8258 9 6 4.4744 -3.0077 -1.4429 10 7 5.6649 -2.2983 0.5722 11 6 6.5295 -3.3291 0.6528 12 8 6.2058 -4.4252 0.2473 13 6 7.8982 -3.1199 1.2479 14 6 8.6733 -4.4387 1.2205 15 6 10.0422 -4.2293 1.8150 16 1 10.3303 -3.2532 2.1765 17 6 10.9263 -5.2839 1.8982 18 7 10.5753 -6.4726 1.4584 19 14 12.6228 -5.0245 2.6357 20 1 12.7696 -3.6070 3.0533 21 1 12.7891 -5.9080 3.8177 22 1 13.6582 -5.3524 1.6231 23 6 2.1982 -1.1969 -0.0019 24 1 -0.3633 -0.0017 1.0276 25 1 -0.3634 0.8908 -0.5124 26 1 -0.3632 -0.8892 -0.5153 27 1 1.6582 2.1327 0.0011 28 1 4.1204 2.1327 0.0024 29 1 5.3517 0.0002 -0.0018 30 1 2.5794 -3.6852 0.3958 31 1 4.1143 -4.4778 0.8240 32 1 3.4696 -3.1733 1.8497 33 1 5.0192 -2.2727 -2.0353 34 1 5.0191 -3.9519 -1.4443 35 1 3.4843 -3.1592 -1.8729 36 1 5.9238 -1.4218 0.8969 37 1 8.4359 -2.3699 0.6675 38 1 7.7982 -2.7789 2.2783 39 1 8.1355 -5.1883 1.8009 40 1 8.7733 -4.7800 0.1901 41 1 11.1974 -7.2145 1.5167 42 1 1.6582 -2.1322 -0.0080 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291540811.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:12 Heat of formation + Delta-G solvation = -51.004251 kcal Electronic energy + Delta-G solvation = -20902.717645 eV Core-core repulsion = 17846.032166 eV Total energy + Delta-G solvation = -3056.685479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.55143 -40.05513 -37.19388 -35.52718 -33.64765 -33.43095 -32.50822 -30.55748 -28.45100 -27.86527 -27.43712 -24.84528 -23.47017 -22.40510 -21.21855 -20.43165 -18.93538 -18.08410 -17.07366 -16.85783 -16.45567 -16.40628 -15.83492 -15.52297 -14.97864 -14.85839 -14.65194 -14.46374 -14.22666 -14.11558 -13.98003 -13.29930 -13.14711 -13.11902 -12.92746 -12.84104 -12.74424 -12.65992 -12.43523 -12.28254 -11.94418 -11.88783 -11.65443 -11.59396 -11.26013 -10.57678 -10.46765 -10.15752 -9.67099 -9.49418 -8.17955 -6.31691 0.39766 0.48187 1.41832 1.43188 1.56450 1.76543 2.23104 2.44524 2.83597 3.15097 3.48043 3.87272 3.99666 4.03615 4.14665 4.16660 4.26437 4.49237 4.51358 4.53195 4.56362 4.65595 4.68342 4.82172 4.84551 4.86811 4.87908 4.98836 5.09778 5.14955 5.22961 5.29000 5.32076 5.48618 5.51716 5.57117 5.65105 5.70537 5.75311 5.86623 6.11129 6.18702 6.65205 6.87163 7.37691 7.40368 8.94842 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.037727 B = 0.003242 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.987265 B = 8633.259443 C = 9096.028309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.114 4.114 5 C -0.137 4.137 6 C -0.085 4.085 7 C 0.214 3.786 8 C -0.157 4.157 9 C -0.154 4.154 10 N -0.717 5.717 11 C 0.515 3.485 12 O -0.571 6.571 13 C -0.122 4.122 14 C 0.045 3.955 15 C -0.542 4.542 16 H 0.074 0.926 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.973 3.027 20 H -0.253 1.253 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.121 4.121 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.101 0.899 38 H 0.100 0.900 39 H -0.017 1.017 40 H -0.017 1.017 41 H 0.263 0.737 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.029 18.825 -2.741 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.155 4.155 6 C -0.086 4.086 7 C 0.128 3.872 8 C -0.215 4.215 9 C -0.212 4.212 10 N -0.372 5.372 11 C 0.303 3.697 12 O -0.450 6.450 13 C -0.161 4.161 14 C 0.007 3.993 15 C -0.580 4.580 16 H 0.092 0.908 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.139 4.139 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.161 0.839 28 H 0.162 0.838 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.249 0.751 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.001 0.999 40 H 0.002 0.998 41 H 0.071 0.929 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.213 17.888 -3.049 27.163 hybrid contribution 1.195 -0.318 0.341 1.283 sum -19.018 17.569 -2.708 26.033 Atomic orbital electron populations 1.20842 0.89428 1.03674 1.03080 1.20222 0.97429 0.92733 0.98600 1.21385 0.94380 0.98341 1.00460 1.21390 0.94735 0.98200 0.98842 1.21118 1.00461 0.92198 1.01706 1.19751 0.94313 0.93240 1.01276 1.19070 0.81707 0.92846 0.93533 1.22216 1.00595 0.98961 0.99762 1.22152 1.02845 1.01636 0.94576 1.46245 1.14324 1.12874 1.63766 1.21193 0.87239 0.83837 0.77418 1.90602 1.78579 1.26663 1.49162 1.21653 0.91175 1.01002 1.02300 1.18660 0.93859 0.91878 0.94890 1.21749 0.99518 0.96498 1.40232 0.90779 1.26125 1.03582 0.94770 0.95979 1.70178 1.37626 1.01801 1.48128 0.85283 0.78190 0.79028 0.77807 1.17677 1.20623 1.20593 1.21050 0.92815 0.98828 1.01210 0.90426 0.90263 0.91071 0.83930 0.83845 0.85447 0.89652 0.93221 0.92352 0.92509 0.92853 0.90302 0.75146 0.88054 0.88191 0.99872 0.99830 0.92874 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.46 16 2 C -0.09 -1.40 5.88 -19.87 -0.12 -1.52 16 3 C -0.13 -1.85 9.70 22.27 0.22 -1.63 16 4 C -0.11 -1.77 10.05 22.27 0.22 -1.55 16 5 C -0.14 -2.59 9.02 22.27 0.20 -2.39 16 6 C -0.09 -1.82 4.81 -19.87 -0.10 -1.92 16 7 C 0.21 5.64 0.89 2.86 0.00 5.65 16 8 C -0.16 -4.30 7.86 71.98 0.57 -3.74 16 9 C -0.15 -4.34 8.37 71.98 0.60 -3.73 16 10 N -0.72 -20.61 4.88 -426.33 -2.08 -22.69 16 11 C 0.51 20.08 7.25 87.66 0.64 20.72 16 12 O -0.57 -27.28 12.19 -3.01 -0.04 -27.31 16 13 C -0.12 -4.97 5.64 29.85 0.17 -4.80 16 14 C 0.04 2.52 4.26 29.85 0.13 2.64 16 15 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 16 H 0.07 3.90 7.74 -2.91 -0.02 3.88 16 17 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 18 N -0.94 -59.94 13.29 21.44 0.28 -59.65 16 19 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 20 H -0.25 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 C -0.12 -2.26 8.80 22.27 0.20 -2.06 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 26 H 0.07 0.68 8.09 -2.39 -0.02 0.66 16 27 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 29 H 0.13 2.20 6.42 -2.91 -0.02 2.18 16 30 H 0.08 1.85 6.52 -2.39 -0.02 1.84 16 31 H 0.05 1.73 6.25 -2.38 -0.01 1.72 16 32 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.90 6.09 -2.38 -0.01 1.88 16 35 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.41 9.32 6.40 -92.71 -0.59 8.73 16 37 H 0.10 3.66 8.14 -2.39 -0.02 3.64 16 38 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 39 H -0.02 -1.09 8.10 -2.39 -0.02 -1.11 16 40 H -0.02 -1.06 8.10 -2.38 -0.02 -1.08 16 41 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.13 2.19 6.34 -2.91 -0.02 2.17 16 Total: -1.00 -75.21 339.71 4.74 -70.47 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.41 Total: 18.14 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: 4.13 Total: -25.71 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.79 Total: -82.34 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.04 Total: -27.31 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -75.21 4.74 -70.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291540811.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.462 kcal (2) G-P(sol) polarization free energy of solvation -75.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds