Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38287 * 119.92988 * 2 1 4 4 C 1.38118 * 120.06943 * 180.02562 * 3 2 1 5 5 C 1.38865 * 119.92980 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.07161 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99497 * 359.65416 * 6 5 4 8 8 O 1.21288 * 120.00312 * 6.02581 * 7 6 5 9 9 C 1.50709 * 119.99776 * 186.02597 * 7 6 5 10 10 C 1.53001 * 109.47006 * 184.94925 * 9 7 6 11 11 C 1.50696 * 109.47086 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00241 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00077 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99812 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47275 * 89.99919 * 15 13 11 17 17 H 1.48504 * 109.46875 * 210.00001 * 15 13 11 18 18 H 1.48498 * 109.47045 * 329.99955 * 15 13 11 19 19 C 1.46491 * 120.00287 * 179.65279 * 6 5 4 20 20 C 1.52999 * 109.47411 * 300.24017 * 19 6 5 21 21 C 1.52999 * 109.47072 * 60.24220 * 19 6 5 22 22 C 1.38875 * 119.85966 * 0.24986 * 5 4 3 23 23 C 1.38115 * 119.92858 * 359.51674 * 22 5 4 24 24 H 1.08994 * 109.47106 * 90.00387 * 1 2 3 25 25 H 1.08998 * 109.46914 * 210.00082 * 1 2 3 26 26 H 1.09001 * 109.46657 * 329.99672 * 1 2 3 27 27 H 1.08000 * 119.96381 * 359.97374 * 3 2 1 28 28 H 1.07996 * 120.02851 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46704 * 304.94762 * 9 7 6 30 30 H 1.08999 * 109.47076 * 64.94792 * 9 7 6 31 31 H 1.09000 * 109.46764 * 299.99642 * 10 9 7 32 32 H 1.08999 * 109.47312 * 60.00011 * 10 9 7 33 33 H 0.97001 * 119.99870 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47196 * 180.24142 * 19 6 5 35 35 H 1.09000 * 109.47014 * 64.95802 * 20 19 6 36 36 H 1.08997 * 109.47300 * 184.96047 * 20 19 6 37 37 H 1.09004 * 109.47213 * 304.95873 * 20 19 6 38 38 H 1.08998 * 109.47301 * 66.06558 * 21 19 6 39 39 H 1.08999 * 109.47353 * 186.06781 * 21 19 6 40 40 H 1.09002 * 109.46972 * 306.06129 * 21 19 6 41 41 H 1.08006 * 120.03153 * 179.75425 * 22 5 4 42 42 H 1.07997 * 119.95868 * 180.23168 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6732 0.0000 -0.0016 7 6 6.3470 1.1672 -0.0097 8 8 5.7457 2.2154 0.0942 9 6 7.8477 1.1699 -0.1479 10 6 8.3704 2.6007 -0.0048 11 6 9.8710 2.6036 -0.1436 12 1 10.3991 1.6774 -0.3162 13 6 10.5699 3.7883 -0.0492 14 7 11.8794 3.7907 -0.1698 15 14 9.6565 5.3901 0.2501 16 1 9.5421 5.6292 1.7112 17 1 10.4027 6.5101 -0.3779 18 1 8.2988 5.3044 -0.3453 19 6 6.4057 -1.2686 0.0061 20 6 6.0325 -2.0655 1.2578 21 6 6.0397 -2.0764 -1.2407 22 6 3.5781 -1.2018 -0.0052 23 6 2.1969 -1.1984 0.0002 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6552 2.1327 -0.0004 28 1 4.1163 2.1381 -0.0010 29 1 8.2853 0.5438 0.6296 30 1 8.1231 0.7788 -1.1273 31 1 7.9328 3.2269 -0.7823 32 1 8.0951 2.9919 0.9746 33 1 12.3710 4.6243 -0.1038 34 1 7.4773 -1.0694 0.0083 35 1 4.9788 -2.3405 1.2127 36 1 6.6417 -2.9679 1.3090 37 1 6.2113 -1.4557 2.1434 38 1 6.4022 -1.5585 -2.1286 39 1 6.4995 -3.0629 -1.1824 40 1 4.9565 -2.1834 -1.2992 41 1 4.1164 -2.1381 -0.0093 42 1 1.6553 -2.1327 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291589092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = 5.098186 kcal Electronic energy + Delta-G solvation = -21427.540827 eV Core-core repulsion = 18373.288132 eV Total energy + Delta-G solvation = -3054.252695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99785 -38.49155 -36.87345 -33.77559 -32.70384 -31.76592 -31.11059 -30.39112 -27.37555 -27.26738 -25.51070 -22.92771 -22.06425 -21.91649 -20.69175 -19.05246 -17.42111 -16.71892 -16.33282 -15.87446 -15.55978 -14.60206 -14.43156 -14.14291 -13.88112 -13.87871 -13.59795 -13.30860 -13.13287 -12.95025 -12.69336 -12.46348 -12.37774 -12.22829 -11.89413 -11.61259 -11.46737 -11.45253 -11.38471 -11.02152 -10.32814 -10.20152 -10.05160 -9.95929 -9.78562 -9.23721 -8.88208 -8.79863 -8.54762 -7.65122 -6.06754 -4.06122 1.38095 1.53027 2.88637 2.91805 3.35227 3.42220 3.52226 3.92092 4.47426 4.58077 4.70668 4.87535 4.92633 4.94004 5.10994 5.16626 5.28041 5.28657 5.39547 5.41331 5.49138 5.51038 5.60297 5.66510 5.70375 5.82158 5.86238 5.94318 5.98732 6.07942 6.08662 6.15436 6.40817 6.47953 6.60554 6.71316 6.75289 7.26564 7.31968 7.35831 7.49350 7.74193 8.37789 8.48973 8.95324 9.55892 11.05950 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.004487 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.660824 B = 6238.804151 C = 7221.623672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.126 4.126 3 C -0.098 4.098 4 C -0.172 4.172 5 C 0.162 3.838 6 N -0.555 5.555 7 C 0.512 3.488 8 O -0.511 6.511 9 C -0.121 4.121 10 C 0.001 3.999 11 C -0.526 4.526 12 H 0.073 0.927 13 C 0.070 3.930 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.261 1.261 19 C 0.120 3.880 20 C -0.178 4.178 21 C -0.181 4.181 22 C -0.178 4.178 23 C -0.102 4.102 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.119 0.881 28 H 0.184 0.816 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.264 0.736 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.649 -13.789 0.208 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.191 4.191 5 C 0.067 3.933 6 N -0.277 5.277 7 C 0.305 3.695 8 O -0.388 6.388 9 C -0.160 4.160 10 C -0.037 4.037 11 C -0.564 4.564 12 H 0.091 0.909 13 C -0.131 4.131 14 N -0.541 5.541 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.185 1.185 19 C 0.018 3.982 20 C -0.236 4.236 21 C -0.238 4.238 22 C -0.198 4.198 23 C -0.121 4.121 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.137 0.863 28 H 0.200 0.800 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.159 0.841 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -18.683 -13.096 0.263 22.817 hybrid contribution -0.307 0.684 0.168 0.768 sum -18.990 -12.412 0.430 22.691 Atomic orbital electron populations 1.20700 0.91718 1.02222 1.01773 1.19859 0.95770 0.93432 1.03630 1.21051 0.94019 0.97196 0.99372 1.22896 0.94474 1.00614 1.01101 1.18043 0.82432 0.94438 0.98359 1.45977 1.04001 1.07667 1.70081 1.21837 0.91826 0.81812 0.74069 1.90272 1.68796 1.31991 1.47695 1.21770 0.87158 1.03681 1.03432 1.19400 0.96624 0.90025 0.97634 1.21064 0.89563 0.95600 1.50177 0.90893 1.24960 0.94690 0.99131 0.94358 1.69905 1.06329 1.27399 1.50443 0.86808 0.80743 0.83193 0.78902 1.20213 1.21373 1.18500 1.21412 0.97961 0.82881 0.95990 1.22466 1.03153 1.00487 0.97445 1.22476 1.03534 1.00294 0.97524 1.21335 0.94481 0.97091 1.06849 1.20733 0.93348 0.97269 1.00711 0.91758 0.92067 0.91949 0.86270 0.79977 0.89357 0.89005 0.95551 0.96262 0.92653 0.87257 0.90875 0.90940 0.91776 0.91745 0.90948 0.90670 0.84060 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.13 -1.49 5.88 -104.59 -0.62 -2.11 16 3 C -0.10 -1.33 9.69 -39.61 -0.38 -1.72 16 4 C -0.17 -2.77 9.05 -39.39 -0.36 -3.13 16 5 C 0.16 2.43 6.11 -83.69 -0.51 1.92 16 6 N -0.55 -8.31 2.62 -106.39 -0.28 -8.59 16 7 C 0.51 9.42 7.60 -10.98 -0.08 9.34 16 8 O -0.51 -10.87 12.39 5.55 0.07 -10.80 16 9 C -0.12 -2.30 4.09 -27.88 -0.11 -2.41 16 10 C 0.00 0.03 3.34 -27.88 -0.09 -0.07 16 11 C -0.53 -14.78 9.66 -34.44 -0.33 -15.11 16 12 H 0.07 2.13 7.99 -52.49 -0.42 1.72 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 14 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 15 Si 0.88 22.30 27.47 -169.99 -4.67 17.63 16 16 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 17 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.26 -6.58 6.54 56.52 0.37 -6.22 16 19 C 0.12 1.38 3.06 -67.94 -0.21 1.17 16 20 C -0.18 -1.73 8.99 37.16 0.33 -1.39 16 21 C -0.18 -1.73 8.99 37.16 0.33 -1.40 16 22 C -0.18 -2.15 6.83 -39.39 -0.27 -2.42 16 23 C -0.10 -1.15 9.69 -39.61 -0.38 -1.53 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 26 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.18 3.40 4.51 -56.33 -0.25 3.14 16 29 H 0.09 1.53 7.24 -51.93 -0.38 1.15 16 30 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.03 0.67 7.10 -51.93 -0.37 0.30 16 32 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.11 1.24 5.73 -51.93 -0.30 0.95 16 35 H 0.07 0.68 4.76 -51.93 -0.25 0.43 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.72 4.67 -51.93 -0.24 0.48 16 41 H 0.14 1.41 3.33 -52.48 -0.17 1.23 16 42 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -32.46 328.01 -7.74 -40.20 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.16 Total: 1.00 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: -2.42 Total: -17.49 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.49 Total: -35.49 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.67 Total: 17.63 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.46 -7.74 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291589092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.298 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds