Wall clock time and date at job start Mon Mar 30 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38287 * 119.92988 * 2 1 4 4 C 1.38118 * 120.06943 * 180.02562 * 3 2 1 5 5 C 1.38865 * 119.92980 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.07161 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99497 * 359.65416 * 6 5 4 8 8 O 1.21288 * 120.00312 * 6.02581 * 7 6 5 9 9 C 1.50709 * 119.99776 * 186.02597 * 7 6 5 10 10 C 1.53001 * 109.47006 * 184.94925 * 9 7 6 11 11 C 1.50696 * 109.47086 * 180.02562 * 10 9 7 12 12 H 1.08002 * 119.99871 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00241 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00077 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99812 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47275 * 89.99919 * 15 13 11 17 17 H 1.48504 * 109.46875 * 210.00001 * 15 13 11 18 18 H 1.48498 * 109.47045 * 329.99955 * 15 13 11 19 19 C 1.46491 * 120.00287 * 179.65279 * 6 5 4 20 20 C 1.52999 * 109.47411 * 300.24017 * 19 6 5 21 21 C 1.52999 * 109.47072 * 60.24220 * 19 6 5 22 22 C 1.38875 * 119.85966 * 0.24986 * 5 4 3 23 23 C 1.38115 * 119.92858 * 359.51674 * 22 5 4 24 24 H 1.08994 * 109.47106 * 90.00387 * 1 2 3 25 25 H 1.08998 * 109.46914 * 210.00082 * 1 2 3 26 26 H 1.09001 * 109.46657 * 329.99672 * 1 2 3 27 27 H 1.08000 * 119.96381 * 359.97374 * 3 2 1 28 28 H 1.07996 * 120.02851 * 179.97438 * 4 3 2 29 29 H 1.08998 * 109.46704 * 304.94762 * 9 7 6 30 30 H 1.08999 * 109.47076 * 64.94792 * 9 7 6 31 31 H 1.09000 * 109.46764 * 299.99642 * 10 9 7 32 32 H 1.08999 * 109.47312 * 60.00011 * 10 9 7 33 33 H 0.97001 * 119.99870 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47196 * 180.24142 * 19 6 5 35 35 H 1.09000 * 109.47014 * 64.95802 * 20 19 6 36 36 H 1.08997 * 109.47300 * 184.96047 * 20 19 6 37 37 H 1.09004 * 109.47213 * 304.95873 * 20 19 6 38 38 H 1.08998 * 109.47301 * 66.06558 * 21 19 6 39 39 H 1.08999 * 109.47353 * 186.06781 * 21 19 6 40 40 H 1.09002 * 109.46972 * 306.06129 * 21 19 6 41 41 H 1.08006 * 120.03153 * 179.75425 * 22 5 4 42 42 H 1.07997 * 119.95868 * 180.23168 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 0.0000 -0.0005 6 7 5.6732 0.0000 -0.0016 7 6 6.3470 1.1672 -0.0097 8 8 5.7457 2.2154 0.0942 9 6 7.8477 1.1699 -0.1479 10 6 8.3704 2.6007 -0.0048 11 6 9.8710 2.6036 -0.1436 12 1 10.3991 1.6774 -0.3162 13 6 10.5699 3.7883 -0.0492 14 7 11.8794 3.7907 -0.1698 15 14 9.6565 5.3901 0.2501 16 1 9.5421 5.6292 1.7112 17 1 10.4027 6.5101 -0.3779 18 1 8.2988 5.3044 -0.3453 19 6 6.4057 -1.2686 0.0061 20 6 6.0325 -2.0655 1.2578 21 6 6.0397 -2.0764 -1.2407 22 6 3.5781 -1.2018 -0.0052 23 6 2.1969 -1.1984 0.0002 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6552 2.1327 -0.0004 28 1 4.1163 2.1381 -0.0010 29 1 8.2853 0.5438 0.6296 30 1 8.1231 0.7788 -1.1273 31 1 7.9328 3.2269 -0.7823 32 1 8.0951 2.9919 0.9746 33 1 12.3710 4.6243 -0.1038 34 1 7.4773 -1.0694 0.0083 35 1 4.9788 -2.3405 1.2127 36 1 6.6417 -2.9679 1.3090 37 1 6.2113 -1.4557 2.1434 38 1 6.4022 -1.5585 -2.1286 39 1 6.4995 -3.0629 -1.1824 40 1 4.9565 -2.1834 -1.2992 41 1 4.1164 -2.1381 -0.0093 42 1 1.6553 -2.1327 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291589092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:12 Heat of formation + Delta-G solvation = -13.313376 kcal Electronic energy + Delta-G solvation = -21428.339212 eV Core-core repulsion = 18373.288132 eV Total energy + Delta-G solvation = -3055.051080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.17610 -39.65431 -37.96365 -35.70323 -33.91503 -33.29183 -32.40649 -31.41910 -28.73050 -28.12248 -26.87186 -24.06564 -23.48361 -22.93802 -22.05910 -20.39165 -19.17513 -18.14523 -17.63199 -16.96280 -16.76282 -16.30239 -15.62273 -15.50808 -15.09491 -15.03584 -14.72623 -14.50605 -14.42725 -14.14173 -14.00486 -13.57577 -13.52348 -13.12383 -12.97402 -12.95424 -12.73523 -12.46478 -12.44668 -12.28314 -12.06503 -12.00187 -11.81164 -11.45268 -11.12706 -10.98734 -10.80069 -10.24808 -9.80946 -8.71520 -8.33566 -6.36615 0.32843 0.51357 1.31206 1.33622 1.48109 1.55324 1.77067 2.32840 2.90424 3.02147 3.44620 3.74085 4.00500 4.07626 4.09150 4.18784 4.22883 4.25777 4.37947 4.44815 4.47848 4.55209 4.71972 4.76026 4.85573 4.88470 4.88997 4.92829 5.04708 5.14760 5.18889 5.26822 5.30898 5.32816 5.36986 5.40372 5.49901 5.57827 5.69648 5.78081 6.20240 6.21957 6.34707 6.69353 7.05908 7.28784 8.81967 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.023471 B = 0.004487 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.660824 B = 6238.804151 C = 7221.623672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.112 4.112 4 C -0.203 4.203 5 C 0.137 3.863 6 N -0.546 5.546 7 C 0.508 3.492 8 O -0.551 6.551 9 C -0.112 4.112 10 C 0.006 3.994 11 C -0.528 4.528 12 H 0.052 0.948 13 C 0.016 3.984 14 N -0.942 5.942 15 Si 0.936 3.064 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.263 1.263 19 C 0.108 3.892 20 C -0.172 4.172 21 C -0.175 4.175 22 C -0.167 4.167 23 C -0.100 4.100 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.126 0.874 28 H 0.152 0.848 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.011 0.989 32 H 0.009 0.991 33 H 0.268 0.732 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.101 0.899 40 H 0.077 0.923 41 H 0.168 0.832 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.980 -16.252 0.366 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.124 4.124 3 C -0.130 4.130 4 C -0.223 4.223 5 C 0.042 3.958 6 N -0.268 5.268 7 C 0.300 3.700 8 O -0.430 6.430 9 C -0.151 4.151 10 C -0.032 4.032 11 C -0.566 4.566 12 H 0.071 0.929 13 C -0.182 4.182 14 N -0.582 5.582 15 Si 0.760 3.240 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.187 1.187 19 C 0.007 3.993 20 C -0.229 4.229 21 C -0.232 4.232 22 C -0.186 4.186 23 C -0.118 4.118 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.030 0.970 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.184 0.816 42 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -21.030 -15.606 0.421 26.192 hybrid contribution 0.358 1.340 0.104 1.391 sum -20.672 -14.266 0.525 25.123 Atomic orbital electron populations 1.20762 0.89241 1.03436 1.02831 1.20266 0.97609 0.92839 1.01670 1.21197 0.93198 0.98723 0.99905 1.22703 0.95761 1.00182 1.03605 1.18223 0.82222 0.95185 1.00148 1.45931 1.04427 1.07676 1.68773 1.21589 0.91434 0.82548 0.74398 1.90305 1.69315 1.33642 1.49778 1.21568 0.88221 1.00514 1.04825 1.19231 0.94236 0.93319 0.96402 1.21369 0.91412 0.94804 1.49041 0.92931 1.25760 0.95406 1.02551 0.94462 1.70011 1.07733 1.28487 1.51969 0.85870 0.79361 0.79581 0.79170 1.19334 1.20292 1.18690 1.21780 0.97612 0.81842 0.98078 1.22445 1.04136 1.00861 0.95509 1.22454 1.03847 1.01161 0.95761 1.21633 0.95058 0.96783 1.05174 1.21214 0.93120 0.98524 0.98977 0.90639 0.90088 0.91597 0.85620 0.83138 0.87638 0.87774 0.97045 0.97224 0.92320 0.87463 0.90148 0.88140 0.93470 0.92983 0.88003 0.90403 0.81561 0.82706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.01 71.24 0.71 -0.79 16 2 C -0.12 -2.61 5.88 -19.84 -0.12 -2.73 16 3 C -0.11 -3.02 9.69 22.25 0.22 -2.81 16 4 C -0.20 -6.77 9.05 22.39 0.20 -6.57 16 5 C 0.14 4.02 6.11 38.15 0.23 4.25 16 6 N -0.55 -16.24 2.62 -608.90 -1.60 -17.83 16 7 C 0.51 19.22 7.60 87.66 0.67 19.88 16 8 O -0.55 -24.69 12.39 -3.05 -0.04 -24.73 16 9 C -0.11 -4.31 4.09 29.85 0.12 -4.19 16 10 C 0.01 0.30 3.34 29.85 0.10 0.40 16 11 C -0.53 -30.35 9.66 25.60 0.25 -30.10 16 12 H 0.05 3.16 7.99 -2.91 -0.02 3.13 16 13 C 0.02 0.96 5.47 84.65 0.46 1.42 16 14 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 15 Si 0.94 46.81 27.47 68.60 1.88 48.69 16 16 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 18 H -0.26 -13.11 6.54 99.48 0.65 -12.46 16 19 C 0.11 2.28 3.06 44.99 0.14 2.42 16 20 C -0.17 -2.87 8.99 71.98 0.65 -2.22 16 21 C -0.17 -2.87 8.99 71.98 0.65 -2.22 16 22 C -0.17 -3.60 6.83 22.39 0.15 -3.45 16 23 C -0.10 -1.89 9.69 22.25 0.22 -1.68 16 24 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 26 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 27 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 28 H 0.15 6.07 4.51 -63.70 -0.29 5.78 16 29 H 0.11 3.65 7.24 -2.39 -0.02 3.63 16 30 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.01 0.59 7.10 -2.39 -0.02 0.57 16 32 H 0.01 0.48 7.57 -2.39 -0.02 0.47 16 33 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 34 H 0.11 2.28 5.73 -2.39 -0.01 2.27 16 35 H 0.08 1.21 4.76 -2.39 -0.01 1.20 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.23 4.67 -2.39 -0.01 1.22 16 41 H 0.17 2.65 3.33 -2.91 -0.01 2.64 16 42 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -72.92 328.01 5.88 -67.04 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.68 Total: 13.66 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 4.65 Total: -28.37 kcal Atomic # 7 Polarization: -75.00 SS G_CDS: -1.30 Total: -76.29 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 1.88 Total: 48.69 kcal Total: -72.92 5.88 -67.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291589092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.725 kcal (2) G-P(sol) polarization free energy of solvation -72.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds